Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.1e-133 479.9 249 100.0
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 4.8e-116 421.4 287 81.5
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 6.1e-111 404.4 287 78.4
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.7e-108 396.4 317 72.2
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 2.8e-108 395.6 299 75.3
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 3.6e-103 378.6 287 74.6
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 6.1e-103 377.9 287 73.9
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 1.4e-102 376.7 287 72.1
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 1.8e-102 376.3 287 74.2
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 7.5e-101 370.9 287 73.5
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 1.7e-100 369.8 287 69.7
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 4.9e-100 368.2 287 70.7
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 1.6e-98 363.2 287 69.3
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 1.7e-97 359.8 286 69.2
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 2.3e-97 359.4 289 68.9
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 3.0e-97 359.0 287 68.3
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 3.9e-97 358.6 287 69.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 3.9e-97 358.6 287 69.0
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 1.9e-96 356.3 287 67.6
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 1.9e-96 356.3 287 70.0
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 1.9e-96 356.3 287 69.0
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 3.3e-96 355.5 287 69.0
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 4.3e-96 355.1 287 66.9
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.2e-95 351.3 287 67.6
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 6.2e-95 351.3 287 66.2
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 1.4e-94 350.1 287 66.6
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 6.8e-94 347.8 287 67.2
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 8.9e-94 347.4 287 67.2
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 1.5e-93 346.7 286 66.8
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 2.0e-93 346.3 287 66.6
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 3.4e-93 345.5 286 66.4
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 1.3e-92 343.6 286 67.1
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 1.3e-92 343.6 286 67.1
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 2.9e-92 342.4 287 65.9
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 3.7e-92 342.0 287 64.8
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 3.2e-91 339.0 286 63.6
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 9.2e-91 337.4 292 64.7
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 9.2e-91 337.4 292 64.7
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 1.6e-90 336.7 287 64.8
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 1.3e-89 333.6 286 63.3
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 8.6e-89 330.9 279 65.6
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 1.5e-88 330.1 287 62.7
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 1.1e-86 323.9 286 62.2
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 2.3e-86 322.8 288 63.5
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 2.3e-86 322.8 286 61.9
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 4.0e-86 322.0 286 62.6
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 1.9e-83 313.2 286 61.5
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.2e-83 312.4 286 60.5
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 7.1e-83 311.2 284 63.4
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 7.1e-83 311.2 284 63.4
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 9.2e-83 310.8 287 60.3
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 1.2e-82 310.5 286 61.5
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 2.7e-82 309.3 286 60.8
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 1.0e-81 307.4 286 60.1
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 1.3e-81 307.0 352 53.4
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 1.7e-81 306.6 286 60.8
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 3.9e-81 305.4 286 60.5
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 8.6e-81 304.3 285 61.4
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 3.3e-80 302.4 274 61.3
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 5.6e-80 301.6 287 58.5
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 7.3e-80 301.2 287 59.2
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 1.2e-79 300.4 284 60.2
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 2.1e-79 299.7 277 60.3
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 2.1e-79 299.7 286 58.4
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 4.7e-79 298.5 286 59.1
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 1.1e-78 297.4 287 58.5
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 1.1e-78 297.4 287 58.5
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 2.4e-78 296.2 287 58.5
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 3.1e-78 295.8 287 57.8
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 5.2e-78 295.0 287 58.5
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 7.6e-77 291.2 288 58.3
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 9.9e-77 290.8 286 58.0
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 1.4e-75 287.0 511 40.3
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 4.1e-75 285.4 334 53.0
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 4.6e-74 282.0 237 64.6
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 8.7e-73 277.7 289 59.2
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 1.6e-71 273.5 288 55.6
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 4.9e-68 261.9 283 53.4
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 2.4e-67 259.6 282 55.3
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 2.4e-67 259.6 282 52.1
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 1.0e-65 254.2 286 54.2
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 1.3e-65 253.8 311 51.4
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 3.3e-64 249.2 280 53.6
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.8e-63 246.1 283 51.6
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 6.4e-60 235.0 269 51.3
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 2.4e-59 233.0 242 56.2
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.3e-57 226.5 263 48.3
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 4.3e-56 222.2 307 45.3
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 2.8e-55 219.5 219 61.2
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 2.6e-53 213.0 284 43.7
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 6.0e-50 201.8 282 46.5
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 2.3e-49 199.9 281 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 4.3e-48 195.7 285 42.5
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 2.1e-47 193.4 288 39.6
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 8.2e-47 191.4 288 43.1
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 1.3e-41 174.1 279 41.2
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 3.1e-30 136.3 129 62.0
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.2e-29 134.4 193 48.7
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 3.6e-26 122.9 148 48.6
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 4.1e-22 109.4 66 84.8
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.4e-17 94.4 67 68.7
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 9.7e-16 88.2 53 84.9
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 4.8e-15 85.9 67 62.7
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 3.5e-13 79.7 48 75.0
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.9e-12 76.6 141 39.0


User provided reference genes

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