Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163361 Rosa chinensis HOM05D000807 ORTHO05D035020 1.2e-92 343.2 178 100.0
RcHm_v2.0_Chr6g0280181 Rosa chinensis HOM05D000807 ORTHO05D000662 2.9e-86 322.0 169 98.2
FAN27G0176 Fragaria x ananassa HOM05D000807 ORTHO05D000662 1.1e-69 266.9 171 84.2
FAN24G0071 Fragaria x ananassa HOM05D000807 ORTHO05D000662 4.6e-68 261.5 171 83.6
FAN24G2736 Fragaria x ananassa HOM05D000807 ORTHO05D000662 4.6e-68 261.5 171 83.6
FvH4_2g16390 Fragaria vesca HOM05D000807 ORTHO05D000662 1.1e-66 256.9 171 82.5
Prupe.8G176900 Prunus persica HOM05D000807 ORTHO05D000662 3.4e-39 165.6 172 58.7
MD10G1138300 Malus domestica HOM05D000807 ORTHO05D000662 4.8e-33 145.2 169 52.7
MD00G1083700 Malus domestica HOM05D000807 ORTHO05D000662 1.8e-32 143.3 169 52.7
CANSAT25G1601 Cannabis sativa HOM05D000807 ORTHO05D000662 6.9e-32 141.4 173 45.7
Haze_02047 Corylus avellana HOM05D000807 ORTHO05D000662 2.6e-23 112.8 123 51.2
Dinv41887 Davidia involucrata HOM05D000482 ORTHO05D000662 7.7e-23 111.3 173 40.5
Manes.04G064900 Manihot esculenta HOM05D000807 ORTHO05D000662 1.1e-21 107.5 167 40.7
TWI79G0130 Tripterygium wilfordii HOM05D000807 ORTHO05D000662 3.6e-20 102.4 169 40.8
Thecc.02G046700 Theobroma cacao HOM05D000807 ORTHO05D000662 1.0e-19 100.9 169 47.3
CiPaw.06G117800 Carya illinoinensis HOM05D000807 ORTHO05D000662 1.4e-19 100.5 139 44.6
Gohir.A04G125300 Gossypium hirsutum HOM05D000807 ORTHO05D000662 1.8e-19 100.1 158 46.2
PGR142G3699 Punica granatum HOM05D000807 ORTHO05D000662 2.3e-19 99.8 168 39.3
Gorai.012G158400 Gossypium raimondii HOM05D000807 ORTHO05D000662 6.7e-19 98.2 158 46.2
Gohir.D04G170100 Gossypium hirsutum HOM05D000807 ORTHO05D000662 8.8e-19 97.8 158 46.2
Actinidia32017 Actinidia chinensis HOM05D000807 ORTHO05D000662 2.0e-18 96.7 171 42.1
COL.COLO4_17944 Corchorus olitorius HOM05D000807 ORTHO05D000662 5.7e-18 95.1 168 42.9
Duzib052G1112 Durio zibethinus HOM05D000807 ORTHO05D000662 5.7e-18 95.1 168 41.7
CSS0031924 Camellia sinensis var. sinensis HOM05D000807 ORTHO05D000662 2.8e-17 92.8 171 38.0
Sabra09G0111200 Salix brachista HOM05D000807 ORTHO05D000662 4.8e-17 92.0 172 37.8
Sabra04G0123500 Salix brachista HOM05D000807 ORTHO05D000662 6.3e-17 91.7 168 36.9
Lj5A173G70 Lonicera japonica HOM05D000807 ORTHO05D000662 1.1e-16 90.9 188 40.4
Potri.009G143400 Populus trichocarpa HOM05D000807 ORTHO05D000662 1.4e-16 90.5 110 48.2
RhsimUnG0142600 Rhododendron simsii HOM05D000807 ORTHO05D000662 1.4e-16 90.5 171 43.3
QL11p054234 Quercus lobata HOM05D000807 ORTHO05D000662 4.1e-16 89.0 122 45.9
QL11p054527 Quercus lobata HOM05D000807 ORTHO05D000662 5.3e-16 88.6 122 45.9
Rhsim05G0048500 Rhododendron simsii HOM05D000807 ORTHO05D000662 9.1e-16 87.8 179 40.2
GSVIVG01023938001 Vitis vinifera HOM05D000807 ORTHO05D000662 1.2e-15 87.4 170 40.6
Sc14g0002400 Simmondsia chinensis HOM05D000807 ORTHO05D000662 2.0e-15 86.7 171 40.4
Cpa.g.sc20.189 Carica papaya HOM05D000807 ORTHO05D000662 4.5e-15 85.5 160 41.2
Ciclev10028059m.g Citrus clementina HOM05D000807 ORTHO05D000662 1.0e-14 84.3 181 32.0
Nn6g31738 Nelumbo nucifera HOM05D000807 ORTHO05D000662 2.9e-14 82.8 122 41.8
ClCG02G003550 Citrullus lanatus HOM05D000807 ORTHO05D000662 1.1e-13 80.9 170 36.5
Aqoxy6G01731 Aquilegia oxysepala HOM05D000807 ORTHO05D000662 1.4e-13 80.5 158 34.8
Potri.004G183600 Populus trichocarpa HOM05D000807 ORTHO05D000662 1.9e-13 80.1 174 35.6
vmacro17290 Vaccinium macrocarpon HOM05D000807 ORTHO05D000662 4.2e-13 79.0 172 36.0
Prupe.7G013600 Prunus persica HOM05D000807 ORTHO05D000662 5.5e-13 78.6 49 77.6
Sed0014546 Sechium edule HOM05D000807 ORTHO05D000662 7.2e-13 78.2 170 35.3
Prupe.3G126900 Prunus persica HOM05D000807 ORTHO05D000662 1.2e-12 77.4 47 78.7
Prupe.7G009500 Prunus persica HOM05D000807 ORTHO05D000662 1.2e-12 77.4 47 78.7
Prupe.7G029900 Prunus persica HOM05D000807 ORTHO05D000662 1.2e-12 77.4 47 78.7
TAR628G0575 Trochodendron aralioides HOM05D000807 ORTHO05D000662 1.2e-12 77.4 162 35.8
CsaV3_7G001750 Cucumis sativus L. HOM05D000807 ORTHO05D000662 3.6e-12 75.9 171 35.1
Prupe.1G206700 Prunus persica HOM05D000807 ORTHO05D000662 3.6e-12 75.9 47 76.6
THA.LOC104824738 Tarenaya hassleriana HOM05D000807 ORTHO05D000662 3.6e-12 75.9 167 34.7
MELO3C013263.2 Cucumis melo HOM05D000807 ORTHO05D000662 6.1e-12 75.1 171 35.7
DCAR_006291 Daucus carota HOM05D000807 ORTHO05D000662 1.4e-11 73.9 178 32.6
Solyc01g112090.3 Solanum lycopersicum HOM05D000807 ORTHO05D000662 2.3e-11 73.2 153 34.6
Eucgr.I01509 Eucalyptus grandis HOM05D000807 ORTHO05D000662 5.2e-11 72.0 181 34.8
Sopen01g054140 Solanum pennellii HOM05D000807 ORTHO05D000662 5.2e-11 72.0 139 36.0
MSTRG.19949 Avicennia marina HOM05D000807 ORTHO05D000662 6.7e-11 71.6 186 37.1
AUR62027138 Chenopodium quinoa HOM05D000807 ORTHO05D000662 6.7e-11 71.6 181 36.5
ECA233G3551 Erigeron canadensis HOM05D000807 ORTHO05D000662 6.7e-11 71.6 108 41.7
AUR62012938 Chenopodium quinoa HOM05D000807 ORTHO05D000662 8.8e-11 71.2 183 35.0
Hund06170 Selenicereus undatus HOM05D000807 ORTHO05D000662 1.5e-10 70.5 171 35.1
HanXRQChr14g0459011 Helianthus annuus HOM05D000807 ORTHO05D000662 7.4e-10 68.2 119 37.0
Lsat_1_v5_gn_8_120320 Lactuca sativa HOM05D000807 ORTHO05D000662 7.4e-10 68.2 171 34.5
PGSC0003DMG400018638 Solanum tuberosum HOM05D000807 ORTHO05D000662 9.7e-10 67.8 139 34.5
Aa31LG6G16800 Aethionema arabicum HOM05D000807 ORTHO05D000662 1.7e-09 67.0 106 40.6
PSO675G3809 Papaver somniferum HOM05D000807 ORTHO05D000662 2.2e-09 66.6 123 39.8
Sed0010203 Sechium edule HOM05D000807 ORTHO05D000662 2.2e-09 66.6 137 36.5
SalBow1G6485 Salvia bowleyana HOM05D000807 ORTHO05D000662 2.8e-09 66.2 105 40.0
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 3.7e-09 65.9 131 36.6
Cc09_g10630 Coffea canephora HOM05D000807 ORTHO05D000662 3.7e-09 65.9 137 38.7
Nitab4.5_0000783g0280 Nicotiana tabacum HOM05D000807 ORTHO05D000662 3.7e-09 65.9 186 33.9
CARHR294120 Cardamine hirsuta HOM05D000807 ORTHO05D000662 4.8e-09 65.5 89 42.7
CiPaw.05G050300 Carya illinoinensis HOM05D000807 ORTHO05D000662 4.8e-09 65.5 132 38.6
Sabra05G0085200 Salix brachista HOM05D000807 ORTHO05D000662 4.8e-09 65.5 110 39.1
Nitab4.5_0006796g0060 Nicotiana tabacum HOM05D000807 ORTHO05D000662 8.2e-09 64.7 127 37.8
LjContig00081g0002219 Lotus japonicus HOM05D000807 ORTHO05D000662 1.1e-08 64.3 75 52.0
Oeu021967.1 Olea europaea HOM05D000807 ORTHO05D000662 1.4e-08 63.9 184 32.6
BcaC01g00230 Brassica carinata HOM05D000807 ORTHO05D000662 1.8e-08 63.5 49 63.3
AT4G38380 Arabidopsis thaliana HOM05D000807 ORTHO05D000662 2.4e-08 63.2 49 63.3
Potri.005G102800 Populus trichocarpa HOM05D000807 ORTHO05D000662 2.4e-08 63.2 107 36.4
Rhsim08G0028700 Rhododendron simsii HOM05D000807 ORTHO05D000662 2.4e-08 63.2 71 52.1
Actinidia28740 Actinidia chinensis HOM05D000807 ORTHO05D000662 3.1e-08 62.8 87 41.4
BcaC01g00222 Brassica carinata HOM05D000807 ORTHO05D000662 3.1e-08 62.8 129 38.8
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 3.1e-08 62.8 129 38.8
HanXRQChr16g0526901 Helianthus annuus HOM05D000807 ORTHO05D000662 3.1e-08 62.8 87 40.2
Carub.0007s0027 Capsella rubella HOM05D000807 ORTHO05D000662 4.1e-08 62.4 40 75.0
PSO541G1893 Papaver somniferum HOM05D000807 ORTHO05D000662 4.1e-08 62.4 179 31.8
vmacro18448 Vaccinium macrocarpon HOM05D000807 ORTHO05D000662 4.1e-08 62.4 72 50.0
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 5.3e-08 62.0 131 35.9
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 5.3e-08 62.0 131 35.9
Dinv08531 Davidia involucrata HOM05D000807 ORTHO05D000662 7.0e-08 61.6 87 40.2
CSS0024309 Camellia sinensis var. sinensis HOM05D000807 ORTHO05D000662 9.1e-08 61.2 42 66.7
Sp7g37390 Schrenkiella parvula HOM05D000807 ORTHO05D000662 9.1e-08 61.2 130 36.9
AL7G10250 Arabidopsis lyrata HOM05D000807 ORTHO05D000662 1.2e-07 60.8 35 80.0
Cc07_g11600 Coffea canephora HOM05D000807 ORTHO05D000662 1.2e-07 60.8 118 36.4
Medtr5g099020 Medicago truncatula HOM05D000807 ORTHO05D000662 1.2e-07 60.8 57 61.4
Atru.chr3.951 Acer truncatum HOM05D000807 ORTHO05D000662 1.6e-07 60.5 42 69.0
DCAR_011584 Daucus carota HOM05D000807 ORTHO05D000662 1.6e-07 60.5 39 74.4
ECA246G4880 Erigeron canadensis HOM05D000807 ORTHO05D000662 1.6e-07 60.5 111 36.0
Thhalv10024830m.g Eutrema salsugineum HOM05D000807 ORTHO05D000662 1.6e-07 60.5 35 82.9
arahy.Tifrunner.gnm1.ann1.J04VDZ Arachis hypogaea HOM05D000807 ORTHO05D000662 2.0e-07 60.1 38 73.7
arahy.Tifrunner.gnm1.ann1.W8BY14 Arachis hypogaea HOM05D000807 ORTHO05D000662 2.0e-07 60.1 38 73.7
VMungo0647G1123 Vigna mungo HOM05D000807 ORTHO05D000662 2.0e-07 60.1 35 80.0
Lj2A491G63 Lonicera japonica HOM05D000807 ORTHO05D000662 2.6e-07 59.7 42 71.4
Psat2g001320 Pisum sativum HOM05D000807 ORTHO05D000662 3.5e-07 59.3 35 80.0
Zm00001eb130600 Zea mays HOM05D000807 ORTHO05D000662 3.5e-07 59.3 54 61.1
Atru.chr5.3494 Acer truncatum HOM05D000807 ORTHO05D000662 4.5e-07 58.9 46 63.0
Ah.01g023660 Amaranthus hybridus HOM05D000807 ORTHO05D000662 4.5e-07 58.9 176 35.2
Eucgr.J02520 Eucalyptus grandis HOM05D000807 ORTHO05D000662 4.5e-07 58.9 144 35.4
Eucgr.L00936 Eucalyptus grandis HOM05D000807 ORTHO05D000662 4.5e-07 58.9 144 35.4
Lalb_Chr10g0095301 Lupinus albus HOM05D000807 ORTHO05D000662 4.5e-07 58.9 37 75.7
TPR.G18629 Trifolium pratense HOM05D000807 ORTHO05D000662 4.5e-07 58.9 37 73.0
Phvul.008G291400 Phaseolus vulgaris HOM05D000807 ORTHO05D000662 5.9e-07 58.5 51 56.9
Ca_06499_v3 Cicer arietinum L. HOM05D000807 ORTHO05D000662 7.7e-07 58.2 128 39.8
Nitab4.5_0004435g0020 Nicotiana tabacum HOM05D000807 ORTHO05D000662 7.7e-07 58.2 49 59.2
SGA_v2.0_scaffold58G20320 Striga asiatica HOM05D000807 ORTHO05D000662 7.7e-07 58.2 184 33.2
arahy.Tifrunner.gnm1.ann1.S9LP7J Arachis hypogaea HOM05D000807 ORTHO05D000662 1.0e-06 57.8 111 34.2
Peaxi162Scf00580g00420 Petunia axillaris HOM05D000807 ORTHO05D000662 1.0e-06 57.8 53 52.8
arahy.Tifrunner.gnm1.ann1.GK4T5X Arachis hypogaea HOM05D000807 ORTHO05D000662 1.3e-06 57.4 35 71.4
Ciclev10027539m.g Citrus clementina HOM05D000807 ORTHO05D000662 1.3e-06 57.4 37 75.7
MBI08_g15761_MAGBIO Magnolia biondii HOM05D000807 ORTHO05D000662 1.3e-06 57.4 106 37.7
Os09g0548300 Oryza sativa ssp. japonica HOM05D000807 ORTHO05D000662 1.3e-06 57.4 70 48.6
Os02g0833100 Oryza sativa ssp. japonica HOM05D000807 ORTHO05D035020 1.7e-06 57.0 36 69.4
Peaxi162Scf00362g00261 Petunia axillaris HOM05D000807 ORTHO05D000662 1.7e-06 57.0 34 82.4
Migut.B00018 Erythranthe guttata HOM05D000807 ORTHO05D000662 2.9e-06 56.2 127 35.4
MBI02_g37284_MAGBIO Magnolia biondii HOM05D000807 ORTHO05D000662 2.9e-06 56.2 134 32.8
PGSC0003DMG400008676 Solanum tuberosum HOM05D000807 ORTHO05D000662 2.9e-06 56.2 49 55.1
ATR0661G425 Amborella trichopoda HOM05D000807 ORTHO05D000662 3.8e-06 55.8 48 60.4
Glyma.14G002000 Glycine max HOM05D000807 ORTHO05D000662 3.8e-06 55.8 105 39.0
Solyc02g061760.4 Solanum lycopersicum HOM05D000807 ORTHO05D000662 3.8e-06 55.8 49 55.1
Sopen02g012800 Solanum pennellii HOM05D000807 ORTHO05D000662 3.8e-06 55.8 49 55.1
Thecc.01G007900 Theobroma cacao HOM05D000807 ORTHO05D000662 3.8e-06 55.8 35 74.3
Nitab4.5_0009371g0020 Nicotiana tabacum HOM05D000807 ORTHO05D000662 5.0e-06 55.5 108 38.9
Glyma.02G310800 Glycine max HOM05D000807 ORTHO05D000662 6.5e-06 55.1 37 70.3
MBI08_g19963_MAGBIO Magnolia biondii HOM05D000807 ORTHO05D000662 6.5e-06 55.1 128 35.2
Zm00001eb320990 Zea mays HOM05D000807 ORTHO05D000662 8.5e-06 54.7 34 70.6


User provided reference genes

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