Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 6.2e-17 89.7 46 100.0
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 2.4e-13 77.8 39 97.4
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 4.1e-13 77.0 39 97.4
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 5.4e-13 76.6 39 97.4
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.2e-12 75.5 39 94.9
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 2.1e-12 74.7 39 94.9
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.1e-12 74.7 39 94.9
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.1e-12 74.7 39 94.9
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.1e-12 74.7 39 94.9
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.5e-10 68.6 39 87.2
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.5e-10 68.6 39 87.2
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 4.3e-10 67.0 39 84.6
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 4.3e-10 67.0 39 84.6
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 3.6e-09 63.9 39 79.5
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 4.7e-09 63.5 39 82.1
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 4.7e-09 63.5 39 82.1
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 8.1e-09 62.8 33 93.9
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 8.1e-09 62.8 39 76.9
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.4e-08 62.0 39 74.4
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.4e-08 61.2 39 76.9
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 2.4e-08 61.2 39 76.9
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.1e-08 60.8 39 76.9
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 3.1e-08 60.8 39 76.9
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 4.0e-08 60.5 39 76.9
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 5.2e-08 60.1 39 76.9
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 5.2e-08 60.1 39 76.9
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 6.8e-08 59.7 39 71.8
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 6.8e-08 59.7 39 79.5
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 6.8e-08 59.7 39 74.4
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.8e-08 59.7 39 71.8
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 8.9e-08 59.3 39 74.4
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.2e-07 58.9 39 69.2
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.2e-07 58.9 40 72.5
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.5e-07 58.5 39 74.4
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.5e-07 58.5 39 74.4
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.5e-07 58.5 39 71.8
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.5e-07 58.5 39 76.9
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.0e-07 58.2 38 73.7
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 2.0e-07 58.2 39 74.4
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 2.0e-07 58.2 39 74.4
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 2.0e-07 58.2 39 64.1
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.6e-07 57.8 39 71.8
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.6e-07 57.8 39 74.4
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 3.4e-07 57.4 39 71.8
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.4e-07 57.4 39 71.8
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.4e-07 57.4 39 71.8
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 3.4e-07 57.4 39 66.7
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 4.4e-07 57.0 39 69.2
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 4.4e-07 57.0 40 65.0
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 4.4e-07 57.0 39 74.4
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 4.4e-07 57.0 39 74.4
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 4.4e-07 57.0 39 66.7
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 4.4e-07 57.0 39 74.4
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 5.8e-07 56.6 39 66.7
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 5.8e-07 56.6 39 71.8
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 5.8e-07 56.6 39 71.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.8e-07 56.6 35 74.3
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 5.8e-07 56.6 35 74.3
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 7.6e-07 56.2 39 71.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 7.6e-07 56.2 39 71.8
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 7.6e-07 56.2 39 71.8
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 7.6e-07 56.2 39 71.8
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 7.6e-07 56.2 39 69.2
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.3e-06 55.5 35 71.4
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 1.7e-06 55.1 39 66.7
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.7e-06 55.1 39 64.1
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.7e-06 55.1 39 61.5
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 2.2e-06 54.7 39 64.1
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 2.2e-06 54.7 39 69.2
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 2.9e-06 54.3 39 71.8
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.9e-06 54.3 39 69.2
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 2.9e-06 54.3 39 69.2
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 2.9e-06 54.3 39 61.5
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 2.9e-06 54.3 39 71.8
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 3.8e-06 53.9 39 69.2
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 3.8e-06 53.9 39 71.8
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 3.8e-06 53.9 39 59.0
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 4.9e-06 53.5 39 64.1
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 8.4e-06 52.8 39 61.5


User provided reference genes

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