Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 3.6e-166 588.2 302 100.0
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 4.8e-134 481.5 297 85.2
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 4.1e-133 478.4 297 85.2
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 2.0e-132 476.1 297 84.8
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 1.4e-117 426.8 315 72.1
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 3.3e-111 405.6 318 69.2
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 6.7e-104 381.3 332 63.3
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 2.9e-78 296.2 314 56.7
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 5.4e-77 292.0 303 55.8
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 1.6e-76 290.4 315 55.9
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 1.3e-75 287.3 310 53.9
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 1.1e-74 284.3 312 55.4
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 3.6e-73 279.3 307 51.8
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 8.9e-72 274.6 305 53.4
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 2.6e-71 273.1 308 51.6
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 5.4e-69 265.4 322 48.8
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 6.2e-65 251.9 305 51.1
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 6.2e-65 251.9 301 48.5
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 1.4e-64 250.8 305 49.5
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 5.2e-64 248.8 320 50.0
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 6.8e-64 248.4 301 49.2
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 8.9e-64 248.1 303 50.5
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 8.9e-64 248.1 327 46.5
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 1.2e-63 247.7 297 48.5
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 7.5e-63 245.0 298 48.3
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 9.8e-63 244.6 404 42.3
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 2.9e-62 243.0 342 44.7
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 3.7e-62 242.7 307 48.2
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 1.1e-61 241.1 305 47.5
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 1.9e-61 240.4 308 49.4
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 1.9e-61 240.4 309 49.2
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 2.4e-61 240.0 311 48.6
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 4.1e-61 239.2 321 45.8
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 2.3e-59 233.4 312 46.5
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 4.3e-58 229.2 310 45.8
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 7.3e-58 228.4 305 44.9
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 4.7e-57 225.7 311 44.1
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 6.2e-57 225.3 311 44.4
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 8.1e-57 224.9 303 47.5
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 1.8e-56 223.8 305 46.6
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 5.2e-56 222.2 317 43.2
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 1.2e-55 221.1 304 45.1
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 1.2e-55 221.1 335 43.3
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 2.9e-54 216.5 319 44.5
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 8.4e-54 214.9 300 45.0
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 4.1e-53 212.6 318 45.9
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 9.2e-53 211.5 314 46.2
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 1.2e-52 211.1 320 45.0
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 4.6e-52 209.1 311 43.4
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 1.7e-51 207.2 320 43.8
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 2.3e-51 206.8 275 46.9
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 2.3e-51 206.8 337 42.7
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 2.3e-51 206.8 305 44.6
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 3.9e-51 206.1 337 42.1
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 8.6e-51 204.9 314 41.7
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 9.6e-50 201.4 331 41.1
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 3.6e-49 199.5 333 42.9
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 4.7e-49 199.1 290 43.4
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 5.2e-48 195.7 310 44.8
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 8.9e-48 194.9 308 40.9
GSVIVG01036444001 Vitis vinifera HOM05D007356 ORTHO05D009247 8.9e-48 194.9 197 54.8
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 3.4e-47 193.0 335 40.6
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 9.9e-47 191.4 305 40.3
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 4.2e-45 186.0 227 48.9
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 1.6e-44 184.1 276 45.7
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 2.7e-44 183.3 266 45.9
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 1.3e-43 181.0 326 40.5
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 4.8e-41 172.6 239 49.4
Lj2A447T55 Lonicera japonica HOM05D007356 ORTHO05D009247 4.8e-41 172.6 170 57.1
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 6.9e-40 168.7 246 49.2
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 1.2e-39 167.9 329 37.1
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 1.7e-38 164.1 327 37.3
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 9.3e-37 158.3 339 38.3
Sed0015927 Sechium edule HOM05D007356 ORTHO05D009247 2.1e-36 157.1 172 51.2
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 2.7e-36 156.8 323 37.5
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 6.6e-35 152.1 316 36.1
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 2.5e-34 150.2 287 38.0
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 2.5e-34 150.2 302 35.1
EL10Ac2g04607 Beta vulgaris HOM05D007356 ORTHO05D009247 1.8e-32 144.1 426 31.9
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 2.9e-30 136.7 294 37.4
Glyma.19G045202 Glycine max HOM05D007356 ORTHO05D009247 3.5e-28 129.8 187 46.0
PSO782G4491 Papaver somniferum HOM05D007356 ORTHO05D009247 1.0e-27 128.3 261 38.7
Aqoxy3G02147 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 2.3e-27 127.1 140 50.0
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 1.1e-26 124.8 320 31.9
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 1.9e-26 124.0 312 30.4
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 9.6e-26 121.7 269 37.2
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 7.6e-23 112.1 325 32.3
Sc11g0008210 Simmondsia chinensis HOM05D007356 ORTHO05D009247 1.9e-21 107.5 142 45.8
Sed0002469 Sechium edule HOM05D007356 ORTHO05D009247 2.5e-21 107.1 146 47.9
MELO3C023764.2 Cucumis melo HOM05D007356 ORTHO05D009247 1.0e-19 101.7 106 51.9
ATR0681G386 Amborella trichopoda HOM05D007356 ORTHO05D009247 5.7e-18 95.9 382 27.7
Lsat_1_v5_gn_3_87441 Lactuca sativa HOM05D007356 ORTHO05D009247 3.1e-16 90.1 110 47.3
Sc11g0008200 Simmondsia chinensis HOM05D007356 ORTHO05D009247 4.2e-13 79.7 78 55.1
Lj2C447T11 Lonicera japonica HOM05D007356 ORTHO05D009247 6.7e-11 72.4 78 55.1
Actinidia15867 Actinidia chinensis HOM05D007356 ORTHO05D009247 1.8e-08 64.3 70 48.6
SEGI_12886 Sequoiadendron giganteum HOM05D007356 ORTHO05D009247 4.1e-08 63.2 98 29.6


User provided reference genes

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