Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0162971 Rosa chinensis HOM05D007149 ORTHO05D008956 7.8e-49 196.8 100 100.0
FvH4_6g45250 Fragaria vesca HOM05D007149 ORTHO05D008956 2.5e-47 191.8 100 97.0
FAN09G4869 Fragaria x ananassa HOM05D007149 ORTHO05D008956 2.5e-47 191.8 100 97.0
FAN14G5255 Fragaria x ananassa HOM05D007149 ORTHO05D008956 2.5e-47 191.8 100 97.0
FAN09G3419 Fragaria x ananassa HOM05D007149 ORTHO05D008956 8.9e-45 183.3 111 87.4
FAN02G3200 Fragaria x ananassa HOM05D007149 ORTHO05D008956 3.7e-43 177.9 112 83.9
MD17G1105000 Malus domestica HOM05D007149 ORTHO05D008956 9.9e-36 153.3 88 86.4
MD07G1095900 Malus domestica HOM05D007149 ORTHO05D008956 2.2e-35 152.1 88 86.4
Manes.01G108800 Manihot esculenta HOM05D007149 ORTHO05D008956 3.8e-35 151.4 93 78.5
Nn4g23775 Nelumbo nucifera HOM05D007149 ORTHO05D008956 3.8e-35 151.4 91 79.1
Ah.10g037580 Amaranthus hybridus HOM05D007149 ORTHO05D008956 4.9e-35 151.0 92 79.3
Ca_13737_v3 Cicer arietinum L. HOM05D007149 ORTHO05D008956 4.9e-35 151.0 92 78.3
Hma1.2p1_0550F.1_g177300 Hydrangea macrophylla HOM05D007149 ORTHO05D008956 4.9e-35 151.0 92 78.3
Gohir.D07G076000 Gossypium hirsutum HOM05D007149 ORTHO05D008956 6.4e-35 150.6 92 76.1
COL.COLO4_16183 Corchorus olitorius HOM05D007149 ORTHO05D008956 8.4e-35 150.2 92 78.3
TWI74G0718 Tripterygium wilfordii HOM05D007149 ORTHO05D008956 8.4e-35 150.2 92 80.4
Cfa007939 Carpinus fangiana HOM05D007149 ORTHO05D008956 1.1e-34 149.8 91 79.1
Dinv34841 Davidia involucrata HOM05D007149 ORTHO05D008956 1.1e-34 149.8 92 77.2
CANSAT64G1005 Cannabis sativa HOM05D007149 ORTHO05D008956 1.4e-34 149.4 92 77.2
Ciclev10013207m.g Citrus clementina HOM05D007149 ORTHO05D008956 1.4e-34 149.4 92 77.2
EL10Ac2g04594 Beta vulgaris HOM05D007149 ORTHO05D008956 2.4e-34 148.7 92 77.2
Cpa.g.sc179.16 Carica papaya HOM05D007149 ORTHO05D008956 2.4e-34 148.7 90 78.9
Solyc02g063085.1 Solanum lycopersicum HOM05D007149 ORTHO05D008956 2.4e-34 148.7 92 78.3
Gohir.A07G071500 Gossypium hirsutum HOM05D007149 ORTHO05D008956 4.2e-34 147.9 92 75.0
Gorai.001G080200 Gossypium raimondii HOM05D007149 ORTHO05D008956 4.2e-34 147.9 92 75.0
Actinidia15873 Actinidia chinensis HOM05D007149 ORTHO05D008956 5.4e-34 147.5 89 77.5
Sabra17G0093700 Salix brachista HOM05D007149 ORTHO05D008956 7.1e-34 147.1 93 75.3
CDE11G0018 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 9.2e-34 146.7 93 74.2
Os03g0257900 Oryza sativa ssp. japonica HOM05D007149 ORTHO05D008956 9.2e-34 146.7 92 77.2
Thecc.04G136400 Theobroma cacao HOM05D007149 ORTHO05D008956 9.2e-34 146.7 92 75.0
Hund13727 Selenicereus undatus HOM05D007149 ORTHO05D008956 1.2e-33 146.4 90 76.7
Peaxi162Scf00501g00121 Petunia axillaris HOM05D007149 ORTHO05D008956 1.6e-33 146.0 92 77.2
Potri.017G113401 Populus trichocarpa HOM05D007149 ORTHO05D008956 1.6e-33 146.0 93 76.3
Lalb_Chr04g0257361 Lupinus albus HOM05D007149 ORTHO05D008956 2.7e-33 145.2 92 77.2
Cc07_g08920 Coffea canephora HOM05D007149 ORTHO05D008956 3.5e-33 144.8 89 77.5
CAN.G953.15 Capsicum annuum HOM05D007149 ORTHO05D008956 4.6e-33 144.4 92 75.0
Actinidia36312 Actinidia chinensis HOM05D007149 ORTHO05D008956 6.0e-33 144.1 89 75.3
CiPaw.04G040600 Carya illinoinensis HOM05D007149 ORTHO05D008956 6.0e-33 144.1 90 77.8
DCAR_017207 Daucus carota HOM05D007149 ORTHO05D008956 6.0e-33 144.1 93 75.3
Migut.H00206 Erythranthe guttata HOM05D007149 ORTHO05D008956 6.0e-33 144.1 94 73.4
ATR0665G039 Amborella trichopoda HOM05D007149 ORTHO05D008956 1.3e-32 142.9 88 79.5
Glyma.19G046200 Glycine max HOM05D007149 ORTHO05D008956 1.3e-32 142.9 85 78.8
CSS0003707 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 1.7e-32 142.5 88 73.9
QL02p051591 Quercus lobata HOM05D007149 ORTHO05D008956 1.7e-32 142.5 88 77.3
Zm00001eb011230 Zea mays HOM05D007149 ORTHO05D008956 1.7e-32 142.5 89 76.4
Psat1g079040 Pisum sativum HOM05D007149 ORTHO05D008956 3.0e-32 141.7 92 72.8
vmacro05569 Vaccinium macrocarpon HOM05D007149 ORTHO05D008956 3.0e-32 141.7 88 76.1
Eucgr.J01478 Eucalyptus grandis HOM05D007149 ORTHO05D008956 3.9e-32 141.4 88 77.3
Lj2g0020616 Lotus japonicus HOM05D007149 ORTHO05D008956 5.1e-32 141.0 92 75.0
PSO782G5258 Papaver somniferum HOM05D007149 ORTHO05D008956 5.1e-32 141.0 86 80.2
Phvul.004G064400 Phaseolus vulgaris HOM05D007149 ORTHO05D008956 5.1e-32 141.0 90 74.4
PGR004G0481 Punica granatum HOM05D007149 ORTHO05D008956 5.1e-32 141.0 82 79.3
THA.LOC104803005 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 5.1e-32 141.0 90 73.3
CSS0003918 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 6.6e-32 140.6 88 72.7
HPP92_011090 Vanilla planifolia HOM05D007149 ORTHO05D008956 6.6e-32 140.6 90 72.2
Atru.chr8.867 Acer truncatum HOM05D007149 ORTHO05D008956 1.1e-31 139.8 92 71.7
Aa31LG11G13550 Aethionema arabicum HOM05D007149 ORTHO05D008956 1.5e-31 139.4 92 69.6
Sp6g28070 Schrenkiella parvula HOM05D007149 ORTHO05D008956 1.5e-31 139.4 92 71.7
THA.LOC104827153 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 1.5e-31 139.4 90 73.3
Aqoxy3G03934 Aquilegia oxysepala HOM05D007149 ORTHO05D008956 1.9e-31 139.0 90 75.6
Lsat_1_v5_gn_3_78860 Lactuca sativa HOM05D007149 ORTHO05D008956 1.9e-31 139.0 88 75.0
CiPaw.03G060400 Carya illinoinensis HOM05D007149 ORTHO05D008956 2.5e-31 138.7 90 74.4
CsaV3_5G039180 Cucumis sativus L. HOM05D007149 ORTHO05D008956 2.5e-31 138.7 88 76.1
HanXRQChr12g0376461 Helianthus annuus HOM05D007149 ORTHO05D008956 3.3e-31 138.3 88 73.9
GSVIVG01031069001 Vitis vinifera HOM05D007149 ORTHO05D008956 4.3e-31 137.9 88 72.7
Thhalv10015129m.g Eutrema salsugineum HOM05D007149 ORTHO05D008956 5.6e-31 137.5 92 70.7
PSO063G3907 Papaver somniferum HOM05D007149 ORTHO05D008956 5.6e-31 137.5 86 77.9
AL6G26940 Arabidopsis lyrata HOM05D007149 ORTHO05D008956 9.6e-31 136.7 92 69.6
CARHR197250 Cardamine hirsuta HOM05D007149 ORTHO05D008956 9.6e-31 136.7 92 69.6
Medtr0024s0060 Medicago truncatula HOM05D007149 ORTHO05D008956 9.6e-31 136.7 84 79.8
MELO3C022093.2 Cucumis melo HOM05D007149 ORTHO05D008956 1.3e-30 136.3 88 75.0
A10p23000 Brassica napus HOM05D007149 ORTHO05D008956 2.1e-30 135.6 88 72.7
BraA10t44369Z Brassica rapa HOM05D007149 ORTHO05D008956 2.1e-30 135.6 88 72.7
unitig_899.g14509 Utricularia gibba HOM05D007149 ORTHO05D008956 2.1e-30 135.6 90 71.1
BcaC04g18912 Brassica carinata HOM05D007149 ORTHO05D008956 2.8e-30 135.2 88 72.7
C09p60970 Brassica napus HOM05D007149 ORTHO05D008956 2.8e-30 135.2 88 72.7
BolC9t58944H Brassica oleracea HOM05D007149 ORTHO05D008956 2.8e-30 135.2 88 72.7
Sed0025185 Sechium edule HOM05D007149 ORTHO05D008956 2.8e-30 135.2 88 75.0
Sc11g0008240 Simmondsia chinensis HOM05D007149 ORTHO05D008956 2.8e-30 135.2 91 70.3
BcaB08g36883 Brassica carinata HOM05D007149 ORTHO05D008956 3.6e-30 134.8 89 71.9
Carub.0006s1425 Capsella rubella HOM05D007149 ORTHO05D008956 4.8e-30 134.4 92 68.5
AT5G16060 Arabidopsis thaliana HOM05D007149 ORTHO05D008956 1.8e-29 132.5 92 67.4
Duzib133G0440 Durio zibethinus HOM05D007149 ORTHO05D008956 1.3e-27 126.3 126 54.0
Haze_14138 Corylus avellana HOM05D007149 ORTHO05D008956 1.4e-26 122.9 69 82.6
Nn3g17784 Nelumbo nucifera HOM05D007149 ORTHO05D008956 4.2e-26 121.3 75 76.0
SalBow3G3356 Salvia bowleyana HOM05D007149 ORTHO05D008956 1.6e-25 119.4 68 82.4
Prupe.3G238900 Prunus persica HOM05D007149 ORTHO05D008956 7.8e-25 117.1 69 81.2
CDE05G2183 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 1.0e-24 116.7 67 80.6
PGSC0003DMG400024179 Solanum tuberosum HOM05D007149 ORTHO05D008956 1.0e-24 116.7 76 72.4
ClCG11G005400 Citrullus lanatus HOM05D007149 ORTHO05D008956 2.3e-24 115.5 66 84.8
HPP92_011107 Vanilla planifolia HOM05D007149 ORTHO05D008956 2.3e-24 115.5 72 72.2
TPR.G32450 Trifolium pratense HOM05D007149 ORTHO05D008956 3.0e-24 115.2 150 46.0
arahy.Tifrunner.gnm1.ann1.2T9F1Z Arachis hypogaea HOM05D007149 ORTHO05D008956 5.1e-24 114.4 80 68.8
arahy.Tifrunner.gnm1.ann1.HVR4ZG Arachis hypogaea HOM05D007149 ORTHO05D008956 5.1e-24 114.4 80 68.8
Nitab4.5_0001569g0020 Nicotiana tabacum HOM05D007149 ORTHO05D008956 1.1e-23 113.2 74 68.9
Aa31LG2G17140 Aethionema arabicum HOM05D007149 ORTHO05D008956 2.5e-23 112.1 76 65.8
SHI30170 Sapria himalayana HOM05D007149 ORTHO05D008956 7.3e-23 110.5 67 73.1
Sopen02g014160 Solanum pennellii HOM05D007149 ORTHO05D008956 6.2e-22 107.5 69 72.5
SalBow6G3599 Salvia bowleyana HOM05D007149 ORTHO05D008956 8.1e-22 107.1 67 74.6
AUR62014527 Chenopodium quinoa HOM05D007149 ORTHO05D008956 4.0e-21 104.8 69 68.1
Carub.0055s0008 Capsella rubella HOM05D007149 ORTHO05D008956 6.9e-21 104.0 65 73.8
RcHm_v2.0_Chr2g0163021 Rosa chinensis HOM05D007149 ORTHO05D008956 6.9e-21 104.0 67 83.6
AagrBONN_evm.TU.Sc2ySwM_228.1220 Anthoceros agrestis HOM05D007149 ORTHO05D008956 2.0e-20 102.4 82 54.9
ECA246G4376 Erigeron canadensis HOM05D007149 ORTHO05D008956 1.3e-19 99.8 65 69.2
Pp3c20_17910 Physcomitrium patens HOM05D007149 ORTHO05D008956 4.9e-19 97.8 88 54.5
SMO356G0237 Selaginella moellendorffii HOM05D007149 ORTHO05D008956 4.6e-17 91.3 77 55.8
Mapoly0073s0075 Marchantia polymorpha HOM05D007149 ORTHO05D008956 5.6e-15 84.3 65 55.4
SGA_v2.0_scaffold33G13472 Striga asiatica HOM05D007149 ORTHO05D008956 2.0e-12 75.9 45 71.1
Nitab4.5_0002288g0070 Nicotiana tabacum HOM05D007149 ORTHO05D008956 3.4e-12 75.1 91 49.5
MCO15G246 Micromonas commoda HOM05D007149 ORTHO05D008956 9.3e-10 67.0 71 43.7
PRCOL_00003753 Prasinoderma coloniale HOM05D007149 ORTHO05D008956 3.0e-08 62.0 77 41.6


User provided reference genes

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