Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0162351 Rosa chinensis HOM05D006722 ORTHO05D007944 2.0e-60 235.7 132 100.0
FAN14G5843 Fragaria x ananassa HOM05D006722 ORTHO05D007944 2.6e-52 208.8 132 77.3
FAN02G2988 Fragaria x ananassa HOM05D006722 ORTHO05D007944 3.4e-44 181.8 124 73.4
Prupe.3G234900 Prunus persica HOM05D006722 ORTHO05D007944 1.3e-27 126.7 130 52.3
MD17G1079900 Malus domestica HOM05D006722 ORTHO05D007944 6.3e-22 107.8 128 57.0
Thecc.02G175500 Theobroma cacao HOM05D006722 ORTHO05D007944 9.1e-21 104.0 132 47.0
Duzib132G0356 Durio zibethinus HOM05D006722 ORTHO05D007944 1.2e-20 103.6 126 50.0
ECA246G2923 Erigeron canadensis HOM05D006722 ORTHO05D007944 2.0e-20 102.8 134 44.8
Glyma.13G299400 Glycine max HOM05D006722 ORTHO05D007944 2.6e-20 102.4 124 52.4
Medtr4g037480 Medicago truncatula HOM05D006722 ORTHO05D007944 1.0e-19 100.5 121 50.4
Rhsim06G0148700 Rhododendron simsii HOM05D006722 ORTHO05D007944 1.0e-19 100.5 130 43.1
TAR141G0004 Trochodendron aralioides HOM05D006722 ORTHO05D007944 1.0e-19 100.5 152 53.9
Atru.chr6.3036 Acer truncatum HOM05D006722 ORTHO05D007944 2.2e-19 99.4 131 45.0
Duzib052G0119 Durio zibethinus HOM05D006722 ORTHO05D007944 3.8e-19 98.6 127 45.7
Duzib052G0455 Durio zibethinus HOM05D006722 ORTHO05D007944 3.8e-19 98.6 127 45.7
Medtr4g037560 Medicago truncatula HOM05D006722 ORTHO05D007944 3.8e-19 98.6 123 56.9
TWI36G1477 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 1.1e-18 97.1 128 49.2
Lj3g0001103 Lotus japonicus HOM05D006722 ORTHO05D007944 1.9e-18 96.3 123 48.0
Ciclev10017219m.g Citrus clementina HOM05D006722 ORTHO05D007944 2.5e-18 95.9 127 46.5
Lalb_Chr14g0366741 Lupinus albus HOM05D006722 ORTHO05D007944 2.5e-18 95.9 130 50.0
TWI75G0677 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 3.2e-18 95.5 123 48.8
Oeu029925.1 Olea europaea HOM05D006722 ORTHO05D007944 4.2e-18 95.1 126 42.1
HanXRQChr17g0559971 Helianthus annuus HOM05D006722 ORTHO05D007944 2.1e-17 92.8 126 44.4
Glyma.06G296300 Glycine max HOM05D006722 ORTHO05D007944 6.1e-17 91.3 122 55.7
Hma1.2p1_0875F.1_g231440 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 6.1e-17 91.3 125 44.8
Ca_05301_v3 Cicer arietinum L. HOM05D006722 ORTHO05D007944 1.0e-16 90.5 129 53.5
COL.COLO4_35406 Corchorus olitorius HOM05D006722 ORTHO05D007944 1.8e-16 89.7 125 56.8
CSS0036536 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 2.3e-16 89.4 122 54.1
Lj3g0012520 Lotus japonicus HOM05D006722 ORTHO05D007944 2.3e-16 89.4 125 55.2
PGR042G1420 Punica granatum HOM05D006722 ORTHO05D007944 3.0e-16 89.0 127 51.2
Gohir.A03G158500 Gossypium hirsutum HOM05D006722 ORTHO05D007944 5.2e-16 88.2 129 45.0
Gohir.D02G181700 Gossypium hirsutum HOM05D006722 ORTHO05D007944 5.2e-16 88.2 129 45.0
Gorai.005G204200 Gossypium raimondii HOM05D006722 ORTHO05D007944 5.2e-16 88.2 129 45.0
Manes.13G149300 Manihot esculenta HOM05D006722 ORTHO05D007944 5.2e-16 88.2 144 45.8
Oeu029927.1 Olea europaea HOM05D006722 ORTHO05D007944 5.2e-16 88.2 111 43.2
TPR.G35552 Trifolium pratense HOM05D006722 ORTHO05D007944 6.7e-16 87.8 121 45.5
VMungo1080G0484 Vigna mungo HOM05D006722 ORTHO05D007944 6.7e-16 87.8 123 59.3
ClCG02G017440 Citrullus lanatus HOM05D006722 ORTHO05D007944 8.8e-16 87.4 127 41.7
DCAR_006245 Daucus carota HOM05D006722 ORTHO05D007944 1.5e-15 86.7 123 43.9
Rhsim06G0148800 Rhododendron simsii HOM05D006722 ORTHO05D007944 7.4e-15 84.3 128 51.6
CSS0029289 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 9.7e-15 84.0 134 41.0
Phvul.011G113200 Phaseolus vulgaris HOM05D006722 ORTHO05D007944 9.7e-15 84.0 141 47.5
Solyc07g054310.3 Solanum lycopersicum HOM05D006722 ORTHO05D007944 1.3e-14 83.6 128 39.1
Eucgr.A01793 Eucalyptus grandis HOM05D006722 ORTHO05D007944 1.7e-14 83.2 129 36.4
Lj8C115G8 Lonicera japonica HOM05D000389 ORTHO05D000287 2.2e-14 82.8 115 43.5
CANSAT64G0061 Cannabis sativa HOM05D006722 ORTHO05D007944 2.8e-14 82.4 140 36.4
Medtr2g090185 Medicago truncatula HOM05D006722 ORTHO05D007944 3.7e-14 82.0 122 43.4
Migut.H01052 Erythranthe guttata HOM05D006722 ORTHO05D007944 8.2e-14 80.9 125 42.4
Gohir.D12G141200 Gossypium hirsutum HOM05D006722 ORTHO05D007944 1.4e-13 80.1 126 46.0
CSS0017413 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 1.8e-13 79.7 130 41.5
Sopen07g028260 Solanum pennellii HOM05D006722 ORTHO05D007944 2.4e-13 79.3 115 40.9
Actinidia09877 Actinidia chinensis HOM05D006722 ORTHO05D007944 7.0e-13 77.8 137 46.7
Cc05_g06730 Coffea canephora HOM05D006722 ORTHO05D007944 7.0e-13 77.8 124 50.0
DCAR_023670 Daucus carota HOM05D006722 ORTHO05D007944 9.1e-13 77.4 123 41.5
Phvul.005G106200 Phaseolus vulgaris HOM05D006722 ORTHO05D007944 9.1e-13 77.4 146 51.4
TPR.G21773 Trifolium pratense HOM05D006722 ORTHO05D007944 9.1e-13 77.4 124 50.8
MSTRG.14198 Avicennia marina HOM05D006722 ORTHO05D007944 2.6e-12 75.9 130 39.2
Lalb_Chr19g0135361 Lupinus albus HOM05D006722 ORTHO05D007944 2.6e-12 75.9 118 40.7
Peaxi162Scf00132g00074 Petunia axillaris HOM05D006722 ORTHO05D007944 2.6e-12 75.9 127 39.4
DCAR_006246 Daucus carota HOM05D006722 ORTHO05D007944 4.5e-12 75.1 113 37.2
Migut.H01053 Erythranthe guttata HOM05D006722 ORTHO05D007944 5.9e-12 74.7 124 39.5
A09p58680 Brassica napus HOM05D006722 ORTHO05D007944 7.7e-12 74.3 133 40.6
BraA09t41254Z Brassica rapa HOM05D006722 ORTHO05D007944 7.7e-12 74.3 133 40.6
Gohir.D06G117266 Gossypium hirsutum HOM05D006722 ORTHO05D007944 7.7e-12 74.3 121 43.8
Psat5g270720 Pisum sativum HOM05D006722 ORTHO05D007944 7.7e-12 74.3 122 45.1
BcaC07g41191 Brassica carinata HOM05D006722 ORTHO05D007944 1.0e-11 73.9 133 38.3
C08p41970 Brassica napus HOM05D006722 ORTHO05D007944 1.0e-11 73.9 133 38.3
BolC8t51760H Brassica oleracea HOM05D006722 ORTHO05D007944 1.0e-11 73.9 133 38.3
Sp3g34120 Schrenkiella parvula HOM05D006722 ORTHO05D007944 1.3e-11 73.6 131 37.4
Lsat_1_v5_gn_3_39421 Lactuca sativa HOM05D006722 ORTHO05D007944 1.7e-11 73.2 89 48.3
Migut.H01051 Erythranthe guttata HOM05D006722 ORTHO05D007944 2.2e-11 72.8 125 40.0
HanXRQChr10g0289571 Helianthus annuus HOM05D006722 ORTHO05D007944 2.2e-11 72.8 121 34.7
Thhalv10002109m.g Eutrema salsugineum HOM05D006722 ORTHO05D007944 3.8e-11 72.0 136 36.8
Gohir.D01G197650 Gossypium hirsutum HOM05D006722 ORTHO05D007944 5.0e-11 71.6 121 43.0
AL3G54120 Arabidopsis lyrata HOM05D006722 ORTHO05D007944 6.5e-11 71.2 135 39.3
Potri.013G144200 Populus trichocarpa HOM05D006722 ORTHO05D007944 6.5e-11 71.2 131 42.0
AT2G20870 Arabidopsis thaliana HOM05D006722 ORTHO05D007944 8.5e-11 70.9 135 38.5
ATR0693G370 Amborella trichopoda HOM05D041462 ORTHO05D007944 1.1e-10 70.5 121 38.8
BcaB08g34945 Brassica carinata HOM05D006722 ORTHO05D007944 1.1e-10 70.5 135 35.6
Carub.0003s3553 Capsella rubella HOM05D006722 ORTHO05D007944 1.5e-10 70.1 137 38.7
PGSC0003DMG400018315 Solanum tuberosum HOM05D006722 ORTHO05D007944 1.5e-10 70.1 124 48.4
Sabra13G0116200 Salix brachista HOM05D006722 ORTHO05D007944 2.5e-10 69.3 120 41.7
Aa31LG8G17780 Aethionema arabicum HOM05D006722 ORTHO05D007944 3.2e-10 68.9 134 35.1
Ca_01515_v3 Cicer arietinum L. HOM05D006722 ORTHO05D007944 7.2e-10 67.8 121 44.6
THA.LOC104824711 Tarenaya hassleriana HOM05D006722 ORTHO05D007944 9.4e-10 67.4 127 36.2
Lsat_1_v5_gn_4_70120 Lactuca sativa HOM05D006722 ORTHO05D007944 1.2e-09 67.0 127 36.2
CARHR111610 Cardamine hirsuta HOM05D006722 ORTHO05D007944 3.6e-09 65.5 135 37.0
MELO3C013561.2 Cucumis melo HOM05D006722 ORTHO05D007944 3.6e-09 65.5 125 33.6
Cpa.g.sc34.125 Carica papaya HOM05D006722 ORTHO05D007944 6.1e-09 64.7 179 37.4
Nitab4.5_0005380g0010 Nicotiana tabacum HOM05D006722 ORTHO05D007944 8.0e-09 64.3 93 41.9
QL08p037794 Quercus lobata HOM05D006722 ORTHO05D007944 1.4e-08 63.5 79 50.6
Rhsim04G0066600 Rhododendron simsii HOM05D006722 ORTHO05D007944 1.8e-08 63.2 120 35.8
Gohir.D12G141100 Gossypium hirsutum HOM05D006722 ORTHO05D007944 4.0e-08 62.0 80 50.0
MBI02_g19252_MAGBIO Magnolia biondii HOM05D006722 ORTHO05D007944 6.7e-08 61.2 64 46.9
Hma1.2p1_0875F.1_g231430 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 1.5e-07 60.1 108 38.9
Psat0s3526g0040 Pisum sativum HOM05D006722 ORTHO05D007944 2.8e-06 55.8 44 61.4
HPP92_001821 Vanilla planifolia HOM05D026263 ORTHO05D007944 2.8e-06 55.8 103 35.0
Actinidia11069 Actinidia chinensis HOM05D006722 ORTHO05D007944 6.3e-06 54.7 76 38.2
Os07g0565800 Oryza sativa ssp. japonica HOM05D026263 ORTHO05D007944 8.2e-06 54.3 89 39.3


User provided reference genes

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