Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 4.3e-71 271.2 131 100.0
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 5.2e-53 211.1 104 96.2
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 1.2e-44 183.3 105 81.0
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.4e-44 181.8 105 81.0
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 5.8e-44 181.0 103 83.5
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.7e-43 179.5 102 80.4
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 2.6e-36 155.6 104 72.1
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 5.8e-36 154.5 101 75.2
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 5.8e-36 154.5 104 70.2
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 9.9e-36 153.7 89 77.5
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.9e-34 149.4 104 70.2
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 3.2e-34 148.7 108 67.6
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 7.1e-34 147.5 105 69.5
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 2.7e-33 145.6 103 66.0
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 4.6e-33 144.8 103 66.0
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 4.6e-33 144.8 100 69.0
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 8.7e-32 140.6 103 66.0
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 8.7e-32 140.6 103 66.0
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 8.7e-32 140.6 103 66.0
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 1.5e-31 139.8 103 68.0
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 1.9e-31 139.4 105 66.7
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 3.3e-31 138.7 94 72.3
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.3e-30 136.7 99 67.7
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 2.8e-30 135.6 101 64.4
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 8.1e-30 134.0 101 63.4
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 8.1e-30 134.0 101 62.4
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 6.9e-29 131.0 104 68.3
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 2.0e-28 129.4 91 68.1
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 9.9e-28 127.1 95 64.2
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 1.3e-27 126.7 95 63.2
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.1e-26 123.6 99 57.6
MD09G1090900 Malus domestica HOM05D007208 ORTHO05D009090 4.2e-26 121.7 67 85.1
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 4.2e-26 121.7 77 74.0
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 2.7e-25 119.0 120 48.3
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 1.0e-24 117.1 120 47.5
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 5.1e-24 114.8 82 65.9
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 6.7e-24 114.4 95 57.9
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 1.1e-23 113.6 92 63.0
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.9e-23 112.8 59 89.8
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 4.8e-22 108.2 65 78.5
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 4.0e-21 105.1 78 66.7
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 9.0e-21 104.0 106 50.9
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 9.0e-21 104.0 90 61.1
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 3.4e-20 102.1 81 60.5
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 1.0e-19 100.5 116 48.3
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 6.5e-19 97.8 79 59.5
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 8.4e-19 97.4 80 58.8
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 1.6e-17 93.2 68 64.7
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 3.5e-17 92.0 112 42.0
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.8e-16 89.7 68 66.2
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 1.8e-16 89.7 79 58.2
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 6.7e-16 87.8 66 65.2
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 8.7e-16 87.4 69 58.0
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 2.5e-15 85.9 56 75.0
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 3.3e-15 85.5 85 49.4
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 5.7e-15 84.7 71 56.3
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 2.1e-14 82.8 64 62.5
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 2.4e-13 79.3 87 49.4
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 3.1e-13 79.0 102 38.2
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 4.1e-13 78.6 83 48.2
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 4.1e-13 78.6 70 54.3
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 5.3e-13 78.2 65 55.4
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 9.0e-13 77.4 83 47.0
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 9.0e-13 77.4 64 57.8
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.6e-12 75.9 74 58.1
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 3.4e-12 75.5 130 35.4
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 4.5e-12 75.1 47 72.3
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 5.9e-12 74.7 83 47.0
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 5.9e-12 74.7 65 56.9
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 1.3e-11 73.6 84 48.8
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 1.3e-11 73.6 64 62.5
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.2e-11 72.8 88 45.5
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.2e-11 72.8 88 45.5
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 3.8e-11 72.0 77 46.8
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.1e-10 70.5 71 52.1
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 1.9e-10 69.7 105 38.1
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 2.5e-10 69.3 91 42.9
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 2.5e-10 69.3 55 58.2
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 3.2e-10 68.9 57 61.4
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 5.5e-10 68.2 56 60.7
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 1.2e-09 67.0 44 65.9
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 1.6e-09 66.6 48 60.4
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 2.1e-09 66.2 48 62.5
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 6.1e-09 64.7 62 53.2
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 1.0e-08 63.9 58 53.4
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 3.0e-08 62.4 41 65.9
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 8.7e-08 60.8 49 57.1
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.1e-07 60.5 45 62.2
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 4.8e-06 55.1 102 31.4
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 6.3e-06 54.7 51 51.0


User provided reference genes

Program Settings