Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0161911 Rosa chinensis HOM05D006917 ORTHO05D008297 2.2e-191 672.2 347 100.0
FAN02G4118 Fragaria x ananassa HOM05D006917 ORTHO05D008297 2.2e-167 592.4 347 87.9
FAN14G5902 Fragaria x ananassa HOM05D006917 ORTHO05D008297 8.4e-167 590.5 347 87.3
FAN09G3443 Fragaria x ananassa HOM05D006917 ORTHO05D008297 1.1e-166 590.1 347 87.9
FvH4_6g44760 Fragaria vesca HOM05D006917 ORTHO05D008297 4.2e-166 588.2 347 87.0
FAN05G2664 Fragaria x ananassa HOM05D006917 ORTHO05D008297 7.6e-160 567.4 347 86.5
Prupe.3G231600 Prunus persica HOM05D006917 ORTHO05D008297 2.1e-154 549.3 347 81.8
MD09G1093800 Malus domestica HOM05D006917 ORTHO05D008297 2.4e-145 519.2 347 76.1
Cfa014546 Carpinus fangiana HOM05D006917 ORTHO05D008297 1.4e-129 466.8 349 71.9
Haze_13090 Corylus avellana HOM05D006917 ORTHO05D008297 2.4e-129 466.1 352 71.6
CANSAT64G1157 Cannabis sativa HOM05D006917 ORTHO05D008297 3.2e-126 455.7 341 69.5
CiPaw.03G170000 Carya illinoinensis HOM05D006917 ORTHO05D008297 4.1e-121 438.7 352 66.2
QL08p037351 Quercus lobata HOM05D006917 ORTHO05D008297 5.2e-116 421.8 356 63.8
COL.COLO4_13687 Corchorus olitorius HOM05D006917 ORTHO05D008297 1.7e-114 416.8 353 63.2
Atru.chr6.3069 Acer truncatum HOM05D006917 ORTHO05D008297 2.2e-114 416.4 337 66.5
Gorai.013G073800 Gossypium raimondii HOM05D006917 ORTHO05D008297 2.8e-114 416.0 353 63.5
Dinv15489 Davidia involucrata HOM05D006917 ORTHO05D008297 8.3e-114 414.5 360 61.1
Gohir.A13G056900 Gossypium hirsutum HOM05D006917 ORTHO05D008297 8.3e-114 414.5 353 63.5
Duzib132G0607 Durio zibethinus HOM05D006917 ORTHO05D008297 1.2e-112 410.6 350 62.3
Manes.13G151300 Manihot esculenta HOM05D006917 ORTHO05D008297 5.9e-112 408.3 354 64.1
Cpa.g.sc53.106 Carica papaya HOM05D006917 ORTHO05D008297 2.2e-111 406.4 360 62.8
Thecc.02G172300 Theobroma cacao HOM05D006917 ORTHO05D008297 2.1e-109 399.8 354 61.0
Ciclev10015637m.g Citrus clementina HOM05D006917 ORTHO05D008297 6.8e-108 394.8 357 60.8
TWI36G0541 Tripterygium wilfordii HOM05D006917 ORTHO05D008297 1.5e-107 393.7 354 60.7
Eucgr.D00334 Eucalyptus grandis HOM05D006917 ORTHO05D008297 2.2e-106 389.8 268 73.1
PGR042G0968 Punica granatum HOM05D006917 ORTHO05D008297 3.7e-106 389.0 355 60.0
Hma1.2p1_0565F.1_g179500 Hydrangea macrophylla HOM05D006917 ORTHO05D008297 1.8e-105 386.7 362 59.4
Potri.013G146900 Populus trichocarpa HOM05D006917 ORTHO05D008297 2.4e-105 386.3 358 62.0
Gohir.D13G065000 Gossypium hirsutum HOM05D006917 ORTHO05D008297 6.6e-103 378.3 256 72.3
Lj3g0010136 Lotus japonicus HOM05D006917 ORTHO05D008297 8.6e-103 377.9 351 57.5
ClCG01G000980 Citrullus lanatus HOM05D006917 ORTHO05D008297 4.2e-102 375.6 355 59.4
THA.LOC104825523 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 2.8e-101 372.9 297 65.0
CSS0047204 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 2.3e-100 369.8 362 56.9
Sabra13G0118400 Salix brachista HOM05D006917 ORTHO05D008297 2.3e-100 369.8 352 59.7
CSS0012077 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 1.2e-99 367.5 362 56.9
Sed0009072 Sechium edule HOM05D006917 ORTHO05D008297 1.2e-99 367.5 351 57.5
A03p57910 Brassica napus HOM05D006917 ORTHO05D008297 4.4e-99 365.5 285 68.1
BolC7t46080H Brassica oleracea HOM05D006917 ORTHO05D008297 4.4e-99 365.5 272 69.1
THA.LOC104807893 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 9.8e-99 364.4 274 65.7
Carub.0007s1255 Capsella rubella HOM05D006917 ORTHO05D008297 1.3e-98 364.0 286 66.8
C07p56030 Brassica napus HOM05D006917 ORTHO05D008297 2.2e-98 363.2 285 67.7
BraA03t14855Z Brassica rapa HOM05D006917 ORTHO05D008297 2.8e-98 362.8 286 67.5
AT4G28210 Arabidopsis thaliana HOM05D006917 ORTHO05D008297 8.3e-98 361.3 332 59.3
AL7G24390 Arabidopsis lyrata HOM05D006917 ORTHO05D008297 1.4e-97 360.5 266 68.8
BcaNung01588 Brassica carinata HOM05D006917 ORTHO05D008297 1.8e-97 360.1 286 64.7
MELO3C005833.2 Cucumis melo HOM05D006917 ORTHO05D008297 4.1e-97 359.0 352 58.0
Thhalv10025608m.g Eutrema salsugineum HOM05D006917 ORTHO05D008297 4.1e-97 359.0 286 65.4
Sp7g26170 Schrenkiella parvula HOM05D006917 ORTHO05D008297 9.2e-97 357.8 286 65.7
VMungo1127G0570 Vigna mungo HOM05D006917 ORTHO05D008297 1.2e-96 357.5 353 55.2
Phvul.011G111800 Phaseolus vulgaris HOM05D006917 ORTHO05D008297 1.6e-96 357.1 355 56.1
CARHR235920 Cardamine hirsuta HOM05D006917 ORTHO05D008297 2.0e-96 356.7 342 57.6
GSVIVG01030015001 Vitis vinifera HOM05D006917 ORTHO05D008297 7.8e-96 354.8 256 68.8
Sopen10g004420 Solanum pennellii HOM05D006917 ORTHO05D008297 1.7e-95 353.6 357 54.3
A01p19630 Brassica napus HOM05D006917 ORTHO05D008297 2.3e-95 353.2 286 65.4
Solyc10g008600.3 Solanum lycopersicum HOM05D006917 ORTHO05D008297 2.3e-95 353.2 356 53.9
PGSC0003DMG401021671 Solanum tuberosum HOM05D006917 ORTHO05D008297 6.6e-95 351.7 357 54.3
Lalb_Chr03g0029201 Lupinus albus HOM05D006917 ORTHO05D008297 1.5e-94 350.5 349 55.0
Peaxi162Scf00608g00317 Petunia axillaris HOM05D006917 ORTHO05D008297 2.5e-94 349.7 349 55.3
CsaV3_5G001130 Cucumis sativus L. HOM05D006917 ORTHO05D008297 1.6e-93 347.1 351 57.3
Aa31LG2G22070 Aethionema arabicum HOM05D006917 ORTHO05D008297 1.4e-92 344.0 287 62.7
Psat7g195960 Pisum sativum HOM05D006917 ORTHO05D008297 1.8e-92 343.6 349 53.9
BraA01t01896Z Brassica rapa HOM05D006917 ORTHO05D008297 2.3e-92 343.2 288 64.2
AUR62044684 Chenopodium quinoa HOM05D006917 ORTHO05D008297 4.0e-92 342.4 357 53.2
Ca_20697_v3 Cicer arietinum L. HOM05D006917 ORTHO05D008297 8.9e-92 341.3 352 53.7
DCAR_009726 Daucus carota HOM05D006917 ORTHO05D008297 1.2e-91 340.9 355 55.8
Lalb_Chr19g0135451 Lupinus albus HOM05D006917 ORTHO05D008297 1.2e-91 340.9 347 53.6
Glyma.12G107100 Glycine max HOM05D006917 ORTHO05D008297 2.0e-91 340.1 343 55.1
Glyma.06G298100 Glycine max HOM05D006917 ORTHO05D008297 7.5e-91 338.2 350 54.6
PSO832G2257 Papaver somniferum HOM05D006917 ORTHO05D008297 1.3e-90 337.4 367 53.1
arahy.Tifrunner.gnm1.ann1.43ZBCD Arachis hypogaea HOM05D006917 ORTHO05D008297 1.7e-90 337.0 268 63.8
Cc05_g06310 Coffea canephora HOM05D006917 ORTHO05D008297 1.7e-90 337.0 255 65.9
Nn1g03886 Nelumbo nucifera HOM05D006917 ORTHO05D008297 2.2e-90 336.7 361 55.4
arahy.Tifrunner.gnm1.ann1.RY5XZD Arachis hypogaea HOM05D006917 ORTHO05D008297 2.9e-90 336.3 268 63.4
EL10Ac9g22343 Beta vulgaris HOM05D006917 ORTHO05D008297 2.9e-90 336.3 357 55.5
Ah.04g154320 Amaranthus hybridus HOM05D006917 ORTHO05D008297 3.7e-90 335.9 283 61.5
AUR62037382 Chenopodium quinoa HOM05D006917 ORTHO05D008297 1.9e-89 333.6 321 57.6
BcaC09g50505 Brassica carinata HOM05D006917 ORTHO05D008297 3.2e-89 332.8 326 57.1
C01p24650 Brassica napus HOM05D006917 ORTHO05D008297 5.4e-89 332.0 315 58.4
TPR.G21667 Trifolium pratense HOM05D006917 ORTHO05D008297 7.0e-89 331.6 341 53.7
HanXRQChr06g0170991 Helianthus annuus HOM05D006917 ORTHO05D008297 1.2e-88 330.9 274 62.4
PSO210G6334 Papaver somniferum HOM05D006917 ORTHO05D008297 1.6e-88 330.5 368 52.4
ECA246G1823 Erigeron canadensis HOM05D006917 ORTHO05D008297 1.0e-87 327.8 266 62.4
Lsat_1_v5_gn_3_39800 Lactuca sativa HOM05D006917 ORTHO05D008297 1.0e-87 327.8 353 53.5
Actinidia30487 Actinidia chinensis HOM05D006917 ORTHO05D008297 3.9e-87 325.9 378 51.6
BcaC06g32638 Brassica carinata HOM05D006917 ORTHO05D008297 6.6e-87 325.1 285 63.5
Migut.M00331 Erythranthe guttata HOM05D006917 ORTHO05D008297 6.6e-87 325.1 329 52.0
Hund08056 Selenicereus undatus HOM05D006917 ORTHO05D008297 2.5e-86 323.2 342 53.5
Medtr4g046023 Medicago truncatula HOM05D006917 ORTHO05D008297 1.6e-85 320.5 349 52.7
MSTRG.18638 Avicennia marina HOM05D006917 ORTHO05D008297 2.8e-85 319.7 360 52.5
MBI19_g29221_MAGBIO Magnolia biondii HOM05D006917 ORTHO05D008297 2.8e-85 319.7 262 62.2
Aqoxy3G03605 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 3.1e-84 316.2 355 52.1
SalBow7G0082 Salvia bowleyana HOM05D006917 ORTHO05D008297 4.4e-83 312.4 403 47.6
MD17G1083500 Malus domestica HOM05D006917 ORTHO05D008297 6.4e-82 308.5 218 73.9
Sc21g0002460 Simmondsia chinensis HOM05D006917 ORTHO05D008297 1.1e-81 307.8 341 51.3
HPP92_002192 Vanilla planifolia HOM05D006917 ORTHO05D008297 2.4e-81 306.6 271 58.3
SGA_v2.0_scaffold70G23465 Striga asiatica HOM05D006917 ORTHO05D008297 5.4e-81 305.4 347 49.0
unitig_746.g26713 Utricularia gibba HOM05D006917 ORTHO05D008297 3.5e-80 302.8 305 51.5
BolC1t02415H Brassica oleracea HOM05D006917 ORTHO05D008297 4.6e-80 302.4 315 55.2
Nitab4.5_0000635g0150 Nicotiana tabacum HOM05D006917 ORTHO05D008297 1.5e-75 287.3 354 50.0
CDE12G0159 Ceratophyllum demersum HOM05D006917 ORTHO05D008297 2.9e-74 283.1 271 52.4
TAR629G2913 Trochodendron aralioides HOM05D006917 ORTHO05D008297 4.9e-74 282.3 293 55.6
Nitab4.5_0003195g0010 Nicotiana tabacum HOM05D006917 ORTHO05D008297 1.1e-73 281.2 232 62.5
Lj8P117T42 Lonicera japonica HOM05D006917 ORTHO05D008297 1.2e-72 277.7 234 61.1
PGSC0003DMG400029584 Solanum tuberosum HOM05D006917 ORTHO05D008297 4.3e-70 269.2 216 61.1
ATR0693G234 Amborella trichopoda HOM05D006917 ORTHO05D008297 1.3e-55 221.1 231 52.8
arahy.Tifrunner.gnm1.ann1.C6FW5S Arachis hypogaea HOM05D006917 ORTHO05D008297 1.5e-43 181.0 162 58.0
arahy.Tifrunner.gnm1.ann1.29DNDL Arachis hypogaea HOM05D006917 ORTHO05D008297 1.6e-37 161.0 136 61.0
SEGI_04255 Sequoiadendron giganteum HOM05D006917 ORTHO05D008297 3.2e-25 120.2 288 30.9
MD17G1083600 Malus domestica HOM05D006917 ORTHO05D008297 1.4e-23 114.8 74 71.6
AagrBONN_evm.TU.Sc2ySwM_228.5823 Anthoceros agrestis HOM05D006917 ORTHO05D008297 9.1e-20 102.1 287 27.5
SEGI_37556 Sequoiadendron giganteum HOM05D006917 ORTHO05D008297 1.8e-15 87.8 122 42.6
Pp3c2_31610 Physcomitrium patens HOM05D037891 ORTHO05D008297 1.8e-12 77.8 307 23.1
Oeu039864.1 Olea europaea HOM05D006917 ORTHO05D008297 1.2e-11 75.1 132 39.4
Cpa.g.sc609.4 Carica papaya HOM05D006917 ORTHO05D008297 2.0e-11 74.3 82 50.0
SMO300G0012 Selaginella moellendorffii HOM05D006917 ORTHO05D008297 1.7e-10 71.2 269 26.8
Aqoxy3G03603 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 1.0e-07 62.0 93 46.2
ATR0693G306 Amborella trichopoda HOM05D006917 ORTHO05D008297 1.5e-06 58.2 65 53.8


User provided reference genes

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