Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 8.9e-33 142.9 67 100.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 8.9e-33 142.9 67 100.0
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-25 118.6 65 83.1
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 5.3e-25 117.1 65 81.5
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-23 112.5 62 82.3
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.1e-22 106.7 60 80.0
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.6e-21 104.0 68 70.6
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 2.5e-19 98.2 60 75.0
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-17 92.8 64 64.1
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-17 92.8 64 64.1
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-17 91.7 61 68.9
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-17 91.7 61 68.9
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 2.4e-17 91.7 61 65.6
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 3.1e-17 91.3 63 63.5
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 5.3e-17 90.5 60 68.3
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 6.9e-17 90.1 61 62.3
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 2.6e-16 88.2 63 58.7
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.5e-16 87.4 61 57.4
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 4.5e-16 87.4 60 61.7
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 5.8e-16 87.0 53 73.6
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.7e-15 85.5 62 64.5
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 3.8e-15 84.3 59 57.6
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.8e-15 84.3 53 64.2
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 3.8e-15 84.3 55 67.3
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 6.4e-15 83.6 65 56.9
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.4e-15 83.2 62 62.9
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.4e-14 82.4 62 62.9
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 2.4e-14 81.6 58 62.1
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.4e-14 81.6 58 60.3
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.2e-14 81.3 60 63.3
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.2e-14 81.3 60 63.3
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 7.1e-14 80.1 51 64.7
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.3e-14 79.7 53 60.4
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.3e-14 79.7 60 61.7
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 9.3e-14 79.7 60 53.3
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-13 79.3 53 60.4
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-13 79.3 63 58.7
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-13 79.0 60 58.3
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-13 79.0 54 63.0
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.6e-13 79.0 54 63.0
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.6e-13 79.0 52 61.5
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.1e-13 78.6 60 58.3
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 2.7e-13 78.2 61 55.7
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-13 78.2 60 58.3
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.7e-13 78.2 60 55.0
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.7e-13 78.2 60 55.0
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 3.5e-13 77.8 51 58.8
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 3.5e-13 77.8 60 55.0
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 3.5e-13 77.8 53 58.5
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 4.6e-13 77.4 51 60.8
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 4.6e-13 77.4 54 59.3
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 4.6e-13 77.4 61 54.1
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 4.6e-13 77.4 67 47.8
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 6.0e-13 77.0 57 56.1
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.0e-13 77.0 56 60.7
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 6.0e-13 77.0 56 60.7
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.0e-13 77.0 64 51.6
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 6.0e-13 77.0 62 56.5
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.0e-13 77.0 58 58.6
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 7.9e-13 76.6 50 64.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-12 76.3 53 56.6
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-12 76.3 59 52.5
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-12 76.3 60 53.3
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.3e-12 75.9 56 55.4
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.3e-12 75.9 59 49.2
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-12 75.9 64 50.0
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.3e-12 75.9 56 58.9
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.8e-12 75.5 61 52.5
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-12 75.5 52 59.6
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-12 75.5 52 59.6
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 1.8e-12 75.5 54 55.6
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.8e-12 75.5 56 60.7
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.3e-12 75.1 60 51.7
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-12 75.1 53 60.4
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.3e-12 75.1 56 58.9
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 2.3e-12 75.1 51 58.8
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.3e-12 75.1 47 68.1
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.0e-12 74.7 60 51.7
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 3.0e-12 74.7 57 52.6
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.0e-12 74.7 58 56.9
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.0e-12 74.7 67 46.3
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 3.9e-12 74.3 58 53.4
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 5.1e-12 73.9 60 51.7
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-12 73.9 62 51.6
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 5.1e-12 73.9 56 62.5
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 6.7e-12 73.6 57 54.4
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 6.7e-12 73.6 53 52.8
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 6.7e-12 73.6 50 64.0
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 8.7e-12 73.2 53 54.7
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 8.7e-12 73.2 63 49.2
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.1e-11 72.8 59 50.8
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-11 72.8 53 50.9
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 1.1e-11 72.8 58 50.0
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.5e-11 72.4 50 62.0
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.5e-11 72.4 51 58.8
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.9e-11 72.0 56 51.8
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.9e-11 72.0 50 60.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-11 72.0 50 64.0
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-11 72.0 50 64.0
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.9e-11 72.0 60 56.7
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-11 71.6 52 55.8
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 2.5e-11 71.6 60 48.3
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.5e-11 71.6 57 54.4
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.5e-11 71.6 57 43.9
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 2.5e-11 71.6 60 48.3
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 3.3e-11 71.2 40 77.5
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.3e-11 70.9 50 58.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.3e-11 70.9 50 58.0
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 4.3e-11 70.9 60 48.3
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.3e-11 70.9 57 47.4
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 4.3e-11 70.9 62 46.8
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 5.6e-11 70.5 60 51.7
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 5.6e-11 70.5 51 58.8
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 5.6e-11 70.5 64 46.9
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.6e-11 70.5 59 50.8
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 7.4e-11 70.1 50 58.0
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 7.4e-11 70.1 50 58.0
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.4e-11 70.1 53 49.1
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 7.4e-11 70.1 52 53.8
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 9.6e-11 69.7 62 45.2
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 9.6e-11 69.7 49 61.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 9.6e-11 69.7 60 50.0
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 9.6e-11 69.7 61 55.7
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.3e-10 69.3 53 50.9
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.3e-10 69.3 51 56.9
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.6e-10 68.9 55 50.9
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.6e-10 68.9 54 51.9
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.6e-10 68.9 59 50.8
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 2.1e-10 68.6 55 52.7
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.8e-10 68.2 53 52.8
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 2.8e-10 68.2 49 57.1
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 3.7e-10 67.8 58 46.6
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.8e-10 67.4 61 42.6
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 4.8e-10 67.4 49 53.1
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 4.8e-10 67.4 56 53.6
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 4.8e-10 67.4 56 53.6
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.2e-10 67.0 53 49.1
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 6.2e-10 67.0 62 45.2
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.2e-10 66.6 61 44.3
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 8.2e-10 66.6 51 54.9
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.2e-10 66.6 53 50.9
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.1e-09 66.2 57 49.1
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-09 66.2 50 66.0
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-09 66.2 50 66.0
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.1e-09 66.2 53 50.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.4e-09 65.9 51 49.0
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.4e-09 65.9 50 50.0
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.8e-09 65.5 50 52.0
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-09 65.5 50 48.0
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.8e-09 65.5 49 51.0
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-09 65.1 50 48.0
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-09 65.1 50 48.0
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.1e-09 64.7 53 50.9
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-09 64.7 50 52.0
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-09 64.7 50 52.0
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-09 64.7 50 52.0
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.1e-09 64.7 55 49.1
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.1e-09 64.7 53 49.1
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 4.0e-09 64.3 49 51.0
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 4.0e-09 64.3 50 46.0
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.0e-09 64.3 51 49.0
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.3e-09 63.9 50 54.0
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.3e-09 63.9 50 54.0
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 5.3e-09 63.9 52 51.9
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 5.3e-09 63.9 56 48.2
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 6.9e-09 63.5 62 41.9
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 6.9e-09 63.5 49 49.0
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 9.0e-09 63.2 49 53.1
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 2.0e-08 62.0 49 46.9
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 2.0e-08 62.0 50 52.0
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-08 62.0 49 46.9
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.0e-08 62.0 49 49.0
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 2.6e-08 61.6 50 54.0
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.5e-08 60.8 51 47.1
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-07 59.3 50 42.0
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-07 59.3 50 42.0
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.7e-07 58.9 50 48.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.7e-07 58.9 49 40.8
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.2e-07 58.5 50 52.0
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.2e-07 58.5 52 50.0
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 3.8e-07 57.8 39 53.8
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-06 54.7 52 48.1


User provided reference genes

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