Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 4.6e-158 561.2 293 100.0
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-150 536.6 293 94.9
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-150 535.4 294 95.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-150 535.4 294 95.2
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 6.0e-150 534.3 293 94.5
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.9e-148 529.3 294 93.9
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 4.7e-126 454.9 291 81.4
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 6.7e-125 451.1 296 78.0
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 2.6e-124 449.1 296 78.0
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 6.3e-123 444.5 297 79.5
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 6.3e-123 444.5 297 79.5
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 2.4e-122 442.6 285 81.4
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 3.1e-122 442.2 291 78.0
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 7.0e-122 441.0 298 79.5
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 1.5e-121 439.9 297 79.1
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.0e-121 439.5 298 77.9
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.9e-121 438.0 294 78.6
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.9e-121 438.0 291 77.7
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.9e-121 438.0 291 77.7
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 1.7e-120 436.4 291 78.7
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.7e-120 436.4 295 77.3
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 2.9e-120 435.6 296 77.7
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 3.8e-120 435.3 291 77.3
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 8.5e-120 434.1 296 77.4
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.1e-119 433.7 296 76.7
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.4e-119 433.3 292 79.1
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.4e-119 433.3 296 77.4
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.5e-119 432.6 286 81.5
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 2.5e-119 432.6 299 76.9
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 3.2e-119 432.2 299 77.3
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 5.5e-119 431.4 296 76.0
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.2e-118 430.3 293 78.5
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-118 429.1 294 79.9
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 3.6e-118 428.7 294 76.9
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 4.7e-118 428.3 285 79.3
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 6.1e-118 427.9 299 76.3
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 8.0e-118 427.6 298 75.2
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 5.2e-117 424.9 291 75.9
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 6.7e-117 424.5 299 75.3
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 8.8e-117 424.1 300 75.7
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.1e-116 423.7 300 76.3
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 1.5e-116 423.3 295 76.6
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.5e-116 423.3 299 74.6
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 2.6e-116 422.5 299 75.9
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 4.4e-116 421.8 295 76.3
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 5.7e-116 421.4 300 75.0
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.7e-116 421.4 297 75.4
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 5.7e-116 421.4 299 75.9
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.3e-115 420.2 291 74.6
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.7e-115 419.9 298 75.2
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 2.2e-115 419.5 282 78.4
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.2e-115 419.5 296 73.3
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.4e-114 416.8 300 74.0
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.4e-114 416.0 301 73.4
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 7.0e-114 414.5 286 74.1
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 7.0e-114 414.5 299 73.9
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 7.0e-114 414.5 291 74.9
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.6e-113 412.5 293 74.7
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 2.6e-113 412.5 280 78.2
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 4.5e-113 411.8 353 66.0
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 7.7e-113 411.0 286 75.9
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 7.7e-113 411.0 295 73.6
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 7.7e-113 411.0 282 75.9
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 1.0e-112 410.6 296 74.7
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 2.9e-112 409.1 284 78.5
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 6.5e-112 407.9 284 78.2
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 8.5e-112 407.5 297 73.7
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.1e-111 407.1 306 72.5
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.9e-111 406.4 295 73.2
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 4.2e-111 405.2 276 75.7
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 2.1e-110 402.9 293 72.7
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.7e-110 402.5 291 74.9
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 2.7e-110 402.5 298 72.1
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 4.7e-110 401.7 310 70.3
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 6.1e-110 401.4 295 72.5
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 6.1e-110 401.4 241 83.0
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.4e-109 400.2 298 71.5
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.4e-109 400.2 295 71.9
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 5.2e-109 398.3 294 73.5
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 6.7e-109 397.9 294 71.4
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 6.7e-109 397.9 292 73.3
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 6.7e-109 397.9 346 63.6
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 8.8e-109 397.5 300 71.3
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.2e-108 397.1 293 73.0
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.2e-108 397.1 345 63.8
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 2.0e-108 396.4 293 72.4
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 7.5e-108 394.4 290 73.8
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.3e-107 393.7 286 74.8
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 1.3e-107 393.7 293 73.0
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 2.2e-107 392.9 289 73.7
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.2e-107 392.9 293 72.4
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 3.7e-107 392.1 271 77.1
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 6.3e-107 391.3 292 72.9
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 6.3e-107 391.3 289 72.0
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 6.3e-107 391.3 289 72.0
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 8.3e-107 391.0 285 72.3
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.4e-106 390.2 289 70.9
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.4e-106 390.2 290 73.1
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.4e-106 390.2 290 73.1
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.4e-106 390.2 292 73.3
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.4e-106 389.4 297 72.4
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.4e-106 389.4 280 73.6
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.4e-106 389.4 280 73.6
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 4.1e-106 388.7 293 71.7
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 5.3e-106 388.3 291 70.8
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 9.1e-106 387.5 305 68.9
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 2.0e-105 386.3 295 67.1
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 7.7e-105 384.4 286 74.1
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 1.0e-104 384.0 292 70.5
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.0e-104 384.0 322 67.4
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.2e-104 382.9 325 66.2
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 6.5e-104 381.3 291 69.1
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 4.0e-101 372.1 269 74.3
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 6.8e-101 371.3 234 79.5
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.5e-100 370.2 300 68.0
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.3e-99 367.1 352 60.8
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.8e-99 365.9 291 66.3
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 4.8e-99 365.2 299 67.9
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.8e-98 363.2 291 69.1
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 9.1e-98 360.9 291 66.7
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 2.0e-97 359.8 284 68.0
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 3.5e-97 359.0 281 69.0
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.6e-94 349.0 227 76.7
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.6e-94 349.0 266 68.0
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 8.0e-94 347.8 327 60.9
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 7.5e-92 341.3 200 87.0
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 9.8e-92 340.9 294 65.0
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 1.1e-90 337.4 226 74.8
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 6.6e-88 328.2 233 74.7
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.1e-85 319.3 230 69.6
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 6.4e-83 311.6 229 72.5
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.4e-82 309.7 221 72.4
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.7e-81 306.2 231 71.4
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 3.9e-80 302.4 262 62.6
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 8.6e-80 301.2 237 64.6
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.1e-79 300.8 298 58.4
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 7.3e-79 298.1 201 73.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 8.9e-77 291.2 182 80.8
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.2e-75 286.6 264 62.9
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 6.4e-75 285.0 265 61.9
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 8.9e-69 264.6 196 70.4
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.6e-65 253.8 185 72.4
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 4.9e-59 232.3 222 53.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 9.2e-58 228.0 234 52.6
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 9.9e-52 208.0 237 48.5
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.4e-50 204.1 150 68.7
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 5.4e-50 202.2 180 59.4
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 7.1e-42 175.3 161 60.9
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 2.1e-41 173.7 219 45.2
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 7.9e-25 118.6 285 36.1
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.1e-21 108.2 69 82.6
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.4e-20 103.2 63 84.1
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 4.5e-20 102.8 59 88.1
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 2.0e-15 87.4 119 46.2
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 2.8e-14 83.6 109 47.7
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 2.7e-09 67.0 56 64.3
Glyma.15G250600 Glycine max HOM05D004655 ORTHO05D215793 6.3e-06 55.8 32 78.1


User provided reference genes

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