Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 1.5e-36 156.8 166 100.0
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 8.4e-24 114.4 170 83.5
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.9e-23 113.2 170 81.2
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.8e-21 106.7 170 79.4
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.6e-19 100.1 170 81.8
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 6.9e-18 94.7 68 70.6
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 1.7e-16 90.1 68 76.5
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 6.5e-16 88.2 63 76.2
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 2.5e-15 86.3 60 70.0
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 3.2e-15 85.9 68 66.2
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 7.2e-15 84.7 68 61.8
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 7.2e-15 84.7 75 66.7
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 9.4e-15 84.3 71 64.8
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 1.6e-14 83.6 77 63.6
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 2.7e-14 82.8 79 55.7
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 3.6e-14 82.4 68 64.7
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 4.6e-14 82.0 68 61.8
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 6.1e-14 81.6 77 63.6
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 7.9e-14 81.3 76 61.8
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 7.9e-14 81.3 56 75.0
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 1.0e-13 80.9 70 64.3
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 1.0e-13 80.9 55 76.4
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.4e-13 80.5 72 61.1
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 1.4e-13 80.5 72 61.1
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 3.9e-13 79.0 64 67.2
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.9e-13 79.0 64 70.3
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 3.9e-13 79.0 64 70.3
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 3.9e-13 79.0 71 60.6
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 6.7e-13 78.2 56 73.2
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 6.7e-13 78.2 63 68.3
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 6.7e-13 78.2 48 81.2
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 8.8e-13 77.8 53 75.5
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 8.8e-13 77.8 65 63.1
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.1e-12 77.4 57 66.7
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.5e-12 77.0 64 68.8
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 1.5e-12 77.0 72 52.8
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 2.0e-12 76.6 57 70.2
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 2.5e-12 76.3 75 61.3
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.3e-12 75.9 55 69.1
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 3.3e-12 75.9 55 69.1
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 3.3e-12 75.9 67 64.2
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 4.3e-12 75.5 62 61.3
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 5.7e-12 75.1 70 57.1
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 5.7e-12 75.1 69 60.9
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 7.4e-12 74.7 68 63.2
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 7.4e-12 74.7 68 64.7
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 1.3e-11 73.9 55 69.1
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 1.7e-11 73.6 66 60.6
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 3.7e-11 72.4 58 69.0
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 4.8e-11 72.0 76 55.3
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 4.8e-11 72.0 56 67.9
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 1.4e-10 70.5 57 68.4
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 1.8e-10 70.1 66 60.6
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 2.4e-10 69.7 58 69.0
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.1e-10 68.9 67 64.2
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 4.1e-10 68.9 66 59.1
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 9.1e-10 67.8 70 60.0
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 1.5e-09 67.0 64 56.2
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 2.0e-09 66.6 65 53.8
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 2.6e-09 66.2 72 55.6
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 2.6e-09 66.2 64 56.2
SGA_v2.0_scaffold49G18329 Striga asiatica HOM05D007783 ORTHO05D009740 2.6e-09 66.2 54 59.3
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 1.0e-08 64.3 68 57.4
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 1.3e-08 63.9 50 66.0
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 1.7e-08 63.5 66 53.0
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 1.7e-08 63.5 75 44.0
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 2.2e-08 63.2 48 66.7
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 2.2e-08 63.2 46 69.6
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 2.9e-08 62.8 65 60.0
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 3.8e-08 62.4 70 54.3
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 5.0e-08 62.0 68 54.4
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 5.0e-08 62.0 81 50.6
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 6.5e-08 61.6 59 57.6
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 1.1e-07 60.8 59 57.6
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 1.1e-07 60.8 59 57.6
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 1.1e-07 60.8 59 57.6
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 1.1e-07 60.8 59 57.6
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 2.5e-07 59.7 58 56.9
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 5.5e-07 58.5 48 60.4
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 7.2e-07 58.2 66 51.5
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 9.4e-07 57.8 65 50.8
Lalb_Chr19g0135631 Lupinus albus HOM05D007783 ORTHO05D009740 2.1e-06 56.6 55 52.7
HPP92_009398 Vanilla planifolia HOM05D048504 ORTHO05D009740 3.6e-06 55.8 67 49.3


User provided reference genes

Program Settings