Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0159711 Rosa chinensis HOM05D000141 ORTHO05D013114 6.0e-38 160.2 74 100.0
vmacro17717 Vaccinium macrocarpon HOM05D000141 ORTHO05D001860 4.5e-17 90.9 46 87.0
Prupe.5G221200 Prunus persica HOM05D000141 ORTHO05D001860 9.9e-17 89.7 45 88.9
Dinv15670 Davidia involucrata HOM05D000141 ORTHO05D001860 1.3e-16 89.4 45 86.7
Rhsim08G0134600 Rhododendron simsii HOM05D000141 ORTHO05D001860 1.3e-16 89.4 45 86.7
Hma1.2p1_0653F.1_g196300 Hydrangea macrophylla HOM05D000141 ORTHO05D001860 3.8e-16 87.8 45 84.4
Actinidia39829 Actinidia chinensis HOM05D000141 ORTHO05D001860 4.9e-16 87.4 45 84.4
RcHm_v2.0_Chr7g0185441 Rosa chinensis HOM05D000141 ORTHO05D001860 4.9e-16 87.4 45 88.9
TAR375G0473 Trochodendron aralioides HOM05D000141 ORTHO05D001860 4.9e-16 87.4 45 88.9
FAN04G1298 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.9e-15 85.5 45 86.7
FAN08G0207 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.9e-15 85.5 45 86.7
FAN13G0310 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.9e-15 85.5 45 86.7
FvH4_5g12130 Fragaria vesca HOM05D000141 ORTHO05D001860 3.2e-15 84.7 45 86.7
FAN18G0927 Fragaria x ananassa HOM05D000141 ORTHO05D001860 3.2e-15 84.7 45 86.7
FAN18G1630 Fragaria x ananassa HOM05D000141 ORTHO05D001860 3.2e-15 84.7 45 86.7
TAR374G0639 Trochodendron aralioides HOM05D000141 ORTHO05D001860 4.2e-15 84.3 45 84.4
TAR629G2026 Trochodendron aralioides HOM05D000141 ORTHO05D001860 7.1e-15 83.6 45 84.4
Eucgr.B00722 Eucalyptus grandis HOM05D000141 ORTHO05D001860 9.3e-15 83.2 45 86.7
Nitab4.5_0001194g0050 Nicotiana tabacum HOM05D000141 ORTHO05D001860 9.3e-15 83.2 46 78.3
Nitab4.5_0007985g0030 Nicotiana tabacum HOM05D000141 ORTHO05D001860 9.3e-15 83.2 46 78.3
Solyc06g069130.4 Solanum lycopersicum HOM05D000141 ORTHO05D001860 9.3e-15 83.2 46 78.3
Sopen06g026410 Solanum pennellii HOM05D000141 ORTHO05D001860 9.3e-15 83.2 46 78.3
PGSC0003DMG401028776 Solanum tuberosum HOM05D000141 ORTHO05D013114 9.3e-15 83.2 46 78.3
PSO210G6968 Papaver somniferum HOM05D000141 ORTHO05D001860 1.6e-14 82.4 45 80.0
CSS0005883 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 2.1e-14 82.0 45 77.8
CSS0009395 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 2.1e-14 82.0 45 77.8
Ciclev10023895m.g Citrus clementina HOM05D000141 ORTHO05D001860 2.1e-14 82.0 45 75.6
Nn1g09531 Nelumbo nucifera HOM05D000141 ORTHO05D001860 2.1e-14 82.0 45 80.0
Peaxi162Scf00013g01026 Petunia axillaris HOM05D000141 ORTHO05D001860 2.1e-14 82.0 46 76.1
Peaxi162Scf00634g00028 Petunia axillaris HOM05D000141 ORTHO05D001860 2.1e-14 82.0 46 76.1
Aqoxy7G00325 Aquilegia oxysepala HOM05D000141 ORTHO05D001860 4.6e-14 80.9 45 80.0
PSO447G0207 Papaver somniferum HOM05D000141 ORTHO05D001860 4.6e-14 80.9 43 81.4
Manes.01G011700 Manihot esculenta HOM05D000141 ORTHO05D001860 7.9e-14 80.1 45 77.8
Glyma.05G233900 Glycine max HOM05D000141 ORTHO05D001860 1.0e-13 79.7 45 77.8
Nn3g18610 Nelumbo nucifera HOM05D000141 ORTHO05D001860 1.0e-13 79.7 45 75.6
Nitab4.5_0000208g0230 Nicotiana tabacum HOM05D000141 ORTHO05D001860 1.0e-13 79.7 46 73.9
PSO478G1443 Papaver somniferum HOM05D000141 ORTHO05D001860 1.0e-13 79.7 44 79.5
PSO782G3574 Papaver somniferum HOM05D000141 ORTHO05D001860 1.0e-13 79.7 44 79.5
Cc04_g07120 Coffea canephora HOM05D000141 ORTHO05D001860 1.8e-13 79.0 45 77.8
Dinv28101 Davidia involucrata HOM05D000141 ORTHO05D001860 1.8e-13 79.0 40 85.0
Lj4g0002174 Lotus japonicus HOM05D000141 ORTHO05D001860 1.8e-13 79.0 45 77.8
GSVIVG01008287001 Vitis vinifera HOM05D000141 ORTHO05D001860 1.8e-13 79.0 44 77.3
Duzib084G1388 Durio zibethinus HOM05D000141 ORTHO05D001860 2.3e-13 78.6 45 77.8
CAN.G423.9 Capsicum annuum HOM05D000141 ORTHO05D001860 3.0e-13 78.2 46 71.7
Ca_25448_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001860 3.9e-13 77.8 45 77.8
Medtr8g104200 Medicago truncatula HOM05D000141 ORTHO05D001860 3.9e-13 77.8 45 77.8
Potri.015G047400 Populus trichocarpa HOM05D000141 ORTHO05D001860 5.1e-13 77.4 45 77.8
PGR083G2430 Punica granatum HOM05D000141 ORTHO05D001860 6.7e-13 77.0 45 77.8
arahy.Tifrunner.gnm1.ann1.75ML24 Arachis hypogaea HOM05D000141 ORTHO05D001860 8.7e-13 76.6 45 73.3
Nitab4.5_0006638g0060 Nicotiana tabacum HOM05D000141 ORTHO05D001860 8.7e-13 76.6 46 69.6
Glyma.08G041200 Glycine max HOM05D000141 ORTHO05D001860 1.1e-12 76.3 45 73.3
MD14G1226600 Malus domestica HOM05D000141 ORTHO05D001860 1.1e-12 76.3 43 81.4
Sabra15G0038700 Salix brachista HOM05D000141 ORTHO05D001860 1.1e-12 76.3 45 77.8
Sabra15G0074600 Salix brachista HOM05D000141 ORTHO05D001860 1.1e-12 76.3 45 77.8
CDE06G1841 Ceratophyllum demersum HOM05D000141 ORTHO05D013114 2.5e-12 75.1 46 71.7
Lj9C426T14 Lonicera japonica HOM05D000141 ORTHO05D001860 2.5e-12 75.1 45 75.6
Sopen12g018330 Solanum pennellii HOM05D000141 ORTHO05D001860 2.5e-12 75.1 46 65.2
arahy.Tifrunner.gnm1.ann1.ZRIJ0L Arachis hypogaea HOM05D000141 ORTHO05D001860 3.3e-12 74.7 45 71.1
HanXRQChr08g0226071 Helianthus annuus HOM05D000141 ORTHO05D001860 3.3e-12 74.7 45 71.1
Potri.012G056700 Populus trichocarpa HOM05D000141 ORTHO05D001860 4.3e-12 74.3 43 76.7
Sabra12G0040200 Salix brachista HOM05D000141 ORTHO05D001860 4.3e-12 74.3 43 76.7
Solyc12g036810.3 Solanum lycopersicum HOM05D000141 ORTHO05D001860 4.3e-12 74.3 46 63.0
MD06G1216000 Malus domestica HOM05D000141 ORTHO05D001860 5.6e-12 73.9 44 75.0
Gohir.A07G172732 Gossypium hirsutum HOM05D000141 ORTHO05D001860 9.6e-12 73.2 46 67.4
Lsat_1_v5_gn_8_147020 Lactuca sativa HOM05D000141 ORTHO05D001860 9.6e-12 73.2 49 67.3
Psat7g012000 Pisum sativum HOM05D000141 ORTHO05D001860 9.6e-12 73.2 45 75.6
Oeu058029.1 Olea europaea HOM05D000141 ORTHO05D001860 1.3e-11 72.8 45 71.1
Sabra15G0070100 Salix brachista HOM05D000141 ORTHO05D001860 1.3e-11 72.8 43 76.7
Sed0024610 Sechium edule HOM05D000141 ORTHO05D001860 1.3e-11 72.8 45 73.3
Atru.chr9.840 Acer truncatum HOM05D000141 ORTHO05D001860 1.6e-11 72.4 45 71.1
TPR.G32706 Trifolium pratense HOM05D000141 ORTHO05D001860 1.6e-11 72.4 43 76.7
Cfa019777 Carpinus fangiana HOM05D000141 ORTHO05D001860 2.1e-11 72.0 45 73.3
ClCG10G016600 Citrullus lanatus HOM05D000141 ORTHO05D001860 2.1e-11 72.0 44 75.0
MELO3C009715.2 Cucumis melo HOM05D000141 ORTHO05D001860 2.1e-11 72.0 45 75.6
Gohir.D09G049000 Gossypium hirsutum HOM05D000141 ORTHO05D001860 2.1e-11 72.0 45 66.7
Gorai.006G061000 Gossypium raimondii HOM05D000141 ORTHO05D001860 2.1e-11 72.0 45 66.7
MBI17_g40131_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001860 2.8e-11 71.6 45 71.1
CsaV3_3G039730 Cucumis sativus L. HOM05D000141 ORTHO05D001860 3.7e-11 71.2 45 73.3
Haze_18673 Corylus avellana HOM05D000141 ORTHO05D001860 8.1e-11 70.1 44 72.7
Gohir.A09G047800 Gossypium hirsutum HOM05D000141 ORTHO05D001860 8.1e-11 70.1 43 67.4
QL10p025322 Quercus lobata HOM05D000141 ORTHO05D001860 1.4e-10 69.3 46 73.9
CiPaw.16G086000 Carya illinoinensis HOM05D000141 ORTHO05D001860 1.8e-10 68.9 45 71.1
DCAR_011354 Daucus carota HOM05D000141 ORTHO05D001860 1.8e-10 68.9 44 65.9
CDE06G2609 Ceratophyllum demersum HOM05D000141 ORTHO05D001860 2.4e-10 68.6 38 76.3
Lalb_Chr16g0387851 Lupinus albus HOM05D000141 ORTHO05D001860 3.1e-10 68.2 37 81.1
SGA_v2.0_scaffold42G16030 Striga asiatica HOM05D000141 ORTHO05D001860 3.1e-10 68.2 44 68.2
COL.COLO4_11308 Corchorus olitorius HOM05D000141 ORTHO05D001860 4.0e-10 67.8 47 68.1
VMungo0251G0923 Vigna mungo HOM05D000141 ORTHO05D001860 5.3e-10 67.4 45 62.2
Cpa.g.sc3.512 Carica papaya HOM05D000141 ORTHO05D001860 6.9e-10 67.0 38 76.3
Glyma.09G184400 Glycine max HOM05D000141 ORTHO05D001860 6.9e-10 67.0 45 66.7
Gohir.D11G004700 Gossypium hirsutum HOM05D000141 ORTHO05D001860 2.0e-09 65.5 37 78.4
Gorai.007G005900 Gossypium raimondii HOM05D000141 ORTHO05D001860 2.0e-09 65.5 37 78.4
Phvul.004G157000 Phaseolus vulgaris HOM05D000141 ORTHO05D001860 2.0e-09 65.5 45 64.4
MBI04_g06594_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001860 4.5e-09 64.3 44 65.9
TWI60G0408 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 1.0e-08 63.2 45 64.4
TWI81G0735 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 1.0e-08 63.2 45 62.2
Aa31LG4G4180 Aethionema arabicum HOM05D000141 ORTHO05D001860 1.7e-08 62.4 45 66.7
QL12p032934 Quercus lobata HOM05D000141 ORTHO05D001860 2.2e-08 62.0 44 63.6
GSVIVG01019753001 Vitis vinifera HOM05D000141 ORTHO05D001860 2.2e-08 62.0 64 48.4
TPR.G27941 Trifolium pratense HOM05D000141 ORTHO05D001860 2.9e-08 61.6 45 62.2
Sc04g0003520 Simmondsia chinensis HOM05D000141 ORTHO05D001860 3.8e-08 61.2 42 69.0
BcaC08g45618 Brassica carinata HOM05D000141 ORTHO05D001860 4.9e-08 60.8 45 68.9
A07p29620 Brassica napus HOM05D000141 ORTHO05D001860 4.9e-08 60.8 45 68.9
C06p33800 Brassica napus HOM05D000141 ORTHO05D001860 4.9e-08 60.8 45 68.9
Medtr6g084490 Medicago truncatula HOM05D000141 ORTHO05D001860 4.9e-08 60.8 45 60.0
Migut.D01472 Erythranthe guttata HOM05D000141 ORTHO05D001860 6.5e-08 60.5 44 65.9
Dinv37638 Davidia involucrata HOM05D000141 ORTHO05D001860 8.4e-08 60.1 45 57.8
Sed0024401 Sechium edule HOM05D000141 ORTHO05D001860 1.4e-07 59.3 36 72.2
AL2G33680 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 1.9e-07 58.9 37 75.7
AT1G73860 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 1.9e-07 58.9 37 75.7
Carub.0002s2062 Capsella rubella HOM05D000141 ORTHO05D001860 1.9e-07 58.9 37 75.7
DCAR_023205 Daucus carota HOM05D000141 ORTHO05D001860 1.9e-07 58.9 45 60.0
Thhalv10018060m.g Eutrema salsugineum HOM05D000141 ORTHO05D001860 1.9e-07 58.9 37 75.7
A07p39720 Brassica napus HOM05D000141 ORTHO05D001860 2.5e-07 58.5 43 65.1
C06p48010 Brassica napus HOM05D000141 ORTHO05D001860 2.5e-07 58.5 43 65.1
BolC6t39836H Brassica oleracea HOM05D000141 ORTHO05D001860 2.5e-07 58.5 43 65.1
BraA07t31521Z Brassica rapa HOM05D000141 ORTHO05D001860 2.5e-07 58.5 43 65.1
Lj2g0007574 Lotus japonicus HOM05D000141 ORTHO05D001860 2.5e-07 58.5 44 56.8
Sp5g29060 Schrenkiella parvula HOM05D000141 ORTHO05D001860 2.5e-07 58.5 37 75.7
THA.LOC104812143 Tarenaya hassleriana HOM05D000141 ORTHO05D001860 2.5e-07 58.5 37 78.4
VMungo0464G0312 Vigna mungo HOM05D000141 ORTHO05D001860 3.2e-07 58.2 46 60.9
AUR62029862 Chenopodium quinoa HOM05D000141 ORTHO05D001860 4.2e-07 57.8 45 60.0
CARHR066960 Cardamine hirsuta HOM05D000141 ORTHO05D001860 5.5e-07 57.4 37 73.0
CiPaw.12G093000 Carya illinoinensis HOM05D000141 ORTHO05D001860 5.5e-07 57.4 44 54.5
Lalb_Chr24g0397771 Lupinus albus HOM05D000141 ORTHO05D001860 9.3e-07 56.6 42 57.1
BcaB03g15732 Brassica carinata HOM05D000141 ORTHO05D001860 1.2e-06 56.2 37 70.3
AUR62025894 Chenopodium quinoa HOM05D000141 ORTHO05D001860 1.2e-06 56.2 45 57.8
Dinv38943 Davidia involucrata HOM05D000141 ORTHO05D001860 1.2e-06 56.2 45 55.6
Cc08_g14770 Coffea canephora HOM05D000141 ORTHO05D001860 1.6e-06 55.8 41 58.5
Thhalv10006662m.g Eutrema salsugineum HOM05D000141 ORTHO05D001860 2.1e-06 55.5 44 65.9
Psat1g037560 Pisum sativum HOM05D000141 ORTHO05D001860 2.1e-06 55.5 45 60.0
CiPaw.11G135100 Carya illinoinensis HOM05D000141 ORTHO05D001860 2.7e-06 55.1 44 52.3
BolC6t38493H Brassica oleracea HOM05D000141 ORTHO05D001860 3.5e-06 54.7 41 68.3
BraA07t30603Z Brassica rapa HOM05D000141 ORTHO05D001860 3.5e-06 54.7 41 68.3
EL10Ac5g11437 Beta vulgaris HOM05D000141 ORTHO05D001860 4.6e-06 54.3 45 53.3
BcaB07g31849 Brassica carinata HOM05D000141 ORTHO05D001860 4.6e-06 54.3 37 73.0
A06p14470 Brassica napus HOM05D000141 ORTHO05D001860 4.6e-06 54.3 37 73.0
C05p16680 Brassica napus HOM05D000141 ORTHO05D001860 4.6e-06 54.3 37 73.0
BraA06t24571Z Brassica rapa HOM05D000141 ORTHO05D001860 4.6e-06 54.3 37 73.0
Os05g0521300 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D001860 4.6e-06 54.3 33 72.7
Aa31LG7G3080 Aethionema arabicum HOM05D000141 ORTHO05D001860 7.9e-06 53.5 41 61.0


User provided reference genes

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