Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0159491 Rosa chinensis HOM05D006553 ORTHO05D008070 1.4e-18 95.1 45 100.0
MD12G1036600 Malus domestica HOM05D006553 ORTHO05D008070 8.7e-16 85.9 43 90.7
FAN02G1927 Fragaria x ananassa HOM05D006553 ORTHO05D008070 1.1e-15 85.5 43 90.7
CiPaw.09G014600 Carya illinoinensis HOM05D006553 ORTHO05D008070 1.9e-15 84.7 43 90.7
RcHm_v2.0_Chr3g0473811 Rosa chinensis HOM05D006553 ORTHO05D008070 2.5e-15 84.3 43 88.4
Prupe.7G109600 Prunus persica HOM05D006553 ORTHO05D008070 3.3e-15 84.0 43 90.7
CSS0014047 Camellia sinensis var. sinensis HOM05D006553 ORTHO05D008070 4.3e-15 83.6 44 86.4
Cfa016612 Carpinus fangiana HOM05D006553 ORTHO05D008070 4.3e-15 83.6 43 88.4
Manes.08G025600 Manihot esculenta HOM05D006553 ORTHO05D008070 4.3e-15 83.6 43 88.4
FvH4_6g18800 Fragaria vesca HOM05D006553 ORTHO05D008070 5.7e-15 83.2 43 88.4
FAN05G5513 Fragaria x ananassa HOM05D006553 ORTHO05D008070 5.7e-15 83.2 43 88.4
Thecc.05G089700 Theobroma cacao HOM05D006553 ORTHO05D008070 5.7e-15 83.2 44 86.4
Ca_09008_v3 Cicer arietinum L. HOM05D006553 ORTHO05D008070 7.4e-15 82.8 43 88.4
Psat0s2641g0200 Pisum sativum HOM05D003122 ORTHO05D008070 7.4e-15 82.8 43 88.4
Lalb_Chr01g0018141 Lupinus albus HOM05D006553 ORTHO05D008070 9.6e-15 82.4 43 86.0
QL07p038710 Quercus lobata HOM05D006553 ORTHO05D008070 9.6e-15 82.4 44 86.4
QL07p038960 Quercus lobata HOM05D006553 ORTHO05D008070 9.6e-15 82.4 44 86.4
Atru.chr8.1531 Acer truncatum HOM05D006553 ORTHO05D008070 1.3e-14 82.0 43 88.4
Eucgr.A02662 Eucalyptus grandis HOM05D006553 ORTHO05D008070 1.3e-14 82.0 44 84.1
Glyma.19G194936 Glycine max HOM05D006553 ORTHO05D008070 1.3e-14 82.0 43 86.0
Gohir.A04G062500 Gossypium hirsutum HOM05D006553 ORTHO05D008070 1.3e-14 82.0 44 84.1
Rhsim04G0131900 Rhododendron simsii HOM05D006553 ORTHO05D008070 1.6e-14 81.6 44 86.4
vmacro08867 Vaccinium macrocarpon HOM05D006553 ORTHO05D008070 1.6e-14 81.6 44 86.4
GSVIVG01033848001 Vitis vinifera HOM05D006553 ORTHO05D008070 1.6e-14 81.6 43 83.7
Haze_19616 Corylus avellana HOM05D006553 ORTHO05D008070 2.1e-14 81.3 43 86.0
Nn2g14162 Nelumbo nucifera HOM05D006553 ORTHO05D008070 2.1e-14 81.3 44 81.8
Gohir.D04G099500 Gossypium hirsutum HOM05D006553 ORTHO05D008070 2.8e-14 80.9 44 81.8
Gorai.009G402400 Gossypium raimondii HOM05D006553 ORTHO05D008070 2.8e-14 80.9 44 81.8
Actinidia31271 Actinidia chinensis HOM05D006553 ORTHO05D008070 3.7e-14 80.5 44 81.8
arahy.Tifrunner.gnm1.ann1.8A6FDN Arachis hypogaea HOM05D006553 ORTHO05D008070 3.7e-14 80.5 43 86.0
arahy.Tifrunner.gnm1.ann1.J3GQ4Y Arachis hypogaea HOM05D006553 ORTHO05D008070 3.7e-14 80.5 43 86.0
Phvul.001G190400 Phaseolus vulgaris HOM05D006553 ORTHO05D008070 4.8e-14 80.1 43 86.0
Cpa.g.sc5.16 Carica papaya HOM05D006553 ORTHO05D008070 6.2e-14 79.7 44 84.1
Lj1g0017162 Lotus japonicus HOM05D006553 ORTHO05D008070 6.2e-14 79.7 43 83.7
PGR004G2635 Punica granatum HOM05D006553 ORTHO05D008070 6.2e-14 79.7 43 81.4
Hma1.2p1_0232F.1_g097960 Hydrangea macrophylla HOM05D006553 ORTHO05D008070 8.2e-14 79.3 44 81.8
Hma1.2p1_0232F.1_g097970 Hydrangea macrophylla HOM05D006553 ORTHO05D008070 8.2e-14 79.3 44 81.8
Cc06_g05810 Coffea canephora HOM05D006553 ORTHO05D008070 1.1e-13 79.0 44 81.8
COL.COLO4_29728 Corchorus olitorius HOM05D006553 ORTHO05D008070 1.1e-13 79.0 40 90.0
Glyma.03G196100 Glycine max HOM05D006553 ORTHO05D008070 1.1e-13 79.0 43 83.7
Medtr7g104650 Medicago truncatula HOM05D006553 ORTHO05D008070 1.1e-13 79.0 43 83.7
VMungo1383G0588 Vigna mungo HOM05D006553 ORTHO05D008070 1.4e-13 78.6 43 83.7
Sabra16G0099500 Salix brachista HOM05D006553 ORTHO05D008070 1.8e-13 78.2 44 81.8
Os02g0533200 Oryza sativa ssp. japonica HOM05D006553 ORTHO05D008070 2.4e-13 77.8 43 79.1
TAR636G1909 Trochodendron aralioides HOM05D006553 ORTHO05D008070 3.1e-13 77.4 43 81.4
CANSAT64G1380 Cannabis sativa HOM05D006553 ORTHO05D008070 4.1e-13 77.0 43 81.4
TPR.G19533 Trifolium pratense HOM05D006553 ORTHO05D008070 6.9e-13 76.3 43 81.4
AL3G21450 Arabidopsis lyrata HOM05D006553 ORTHO05D008070 9.0e-13 75.9 43 81.4
FAN05G5318 Fragaria x ananassa HOM05D006553 ORTHO05D008070 9.0e-13 75.9 40 87.5
Zm00001eb242810 Zea mays HOM05D006553 ORTHO05D008070 9.0e-13 75.9 43 76.7
Ciclev10012335m.g Citrus clementina HOM05D006553 ORTHO05D008070 1.2e-12 75.5 44 77.3
Sed0026247 Sechium edule HOM05D006553 ORTHO05D008070 1.2e-12 75.5 40 85.0
Solyc10g083350.2 Solanum lycopersicum HOM05D006553 ORTHO05D008070 1.2e-12 75.5 44 77.3
Hund19930 Selenicereus undatus HOM05D006553 ORTHO05D008070 1.5e-12 75.1 44 79.5
Lsat_1_v5_gn_8_77160 Lactuca sativa HOM05D006553 ORTHO05D008070 2.0e-12 74.7 44 79.5
HPP92_006351 Vanilla planifolia HOM05D006553 ORTHO05D008070 2.0e-12 74.7 43 76.7
ATR0776G018 Amborella trichopoda HOM05D006553 ORTHO05D008070 2.6e-12 74.3 43 74.4
CDE07G1033 Ceratophyllum demersum HOM05D006553 ORTHO05D008070 2.6e-12 74.3 40 82.5
ClCG10G018950 Citrullus lanatus HOM05D006553 ORTHO05D008070 2.6e-12 74.3 39 84.6
Nitab4.5_0009023g0010 Nicotiana tabacum HOM05D006553 ORTHO05D008070 2.6e-12 74.3 44 77.3
Potri.016G098500 Populus trichocarpa HOM05D006553 ORTHO05D008070 2.6e-12 74.3 44 79.5
DCAR_013388 Daucus carota HOM05D006553 ORTHO05D008070 4.5e-12 73.6 44 75.0
Carub.0008s0494 Capsella rubella HOM05D006553 ORTHO05D008070 5.8e-12 73.2 43 79.1
AT3G10130 Arabidopsis thaliana HOM05D006553 ORTHO05D008070 7.6e-12 72.8 43 79.1
EL10Ac7g16914 Beta vulgaris HOM05D006553 ORTHO05D008070 7.6e-12 72.8 44 77.3
AUR62028519 Chenopodium quinoa HOM05D006553 ORTHO05D008070 7.6e-12 72.8 44 75.0
Thhalv10021175m.g Eutrema salsugineum HOM05D006553 ORTHO05D008070 7.6e-12 72.8 43 76.7
HanXRQChr05g0133131 Helianthus annuus HOM05D006553 ORTHO05D008070 7.6e-12 72.8 44 75.0
Sopen10g032850 Solanum pennellii HOM05D006553 ORTHO05D008070 7.6e-12 72.8 44 75.0
THA.LOC104816396 Tarenaya hassleriana HOM05D006553 ORTHO05D008070 7.6e-12 72.8 44 77.3
Peaxi162Scf00096g00313 Petunia axillaris HOM05D006553 ORTHO05D008070 1.0e-11 72.4 44 77.3
CAN.G1069.17 Capsicum annuum HOM05D006553 ORTHO05D008070 1.3e-11 72.0 44 75.0
MSTRG.10367 Avicennia marina HOM05D006553 ORTHO05D008070 1.7e-11 71.6 43 74.4
CARHR084610 Cardamine hirsuta HOM05D006553 ORTHO05D008070 1.7e-11 71.6 43 76.7
MELO3C009475.2 Cucumis melo HOM05D006553 ORTHO05D008070 1.7e-11 71.6 39 82.1
CsaV3_3G037300 Cucumis sativus L. HOM05D006553 ORTHO05D008070 1.7e-11 71.6 39 82.1
SEGI_29247 Sequoiadendron giganteum HOM05D006553 ORTHO05D008070 1.7e-11 71.6 44 72.7
SEGI_38541 Sequoiadendron giganteum HOM05D006553 ORTHO05D008070 1.7e-11 71.6 44 72.7
PGSC0003DMG400028255 Solanum tuberosum HOM05D006553 ORTHO05D008070 1.7e-11 71.6 44 72.7
C05p57990 Brassica napus HOM05D006553 ORTHO05D008070 2.2e-11 71.2 43 76.7
BolC5t34455H Brassica oleracea HOM05D006553 ORTHO05D008070 2.2e-11 71.2 43 76.7
BraA05t22687Z Brassica rapa HOM05D006553 ORTHO05D008070 2.2e-11 71.2 43 76.7
MBI17_g08341_MAGBIO Magnolia biondii HOM05D006553 ORTHO05D008070 2.2e-11 71.2 43 72.1
SGA_v2.0_scaffold35G14069 Striga asiatica HOM05D006553 ORTHO05D008070 2.2e-11 71.2 44 72.7
ECA236G1922 Erigeron canadensis HOM05D006553 ORTHO05D008070 2.9e-11 70.9 39 82.1
Zm00001eb215690 Zea mays HOM05D006553 ORTHO05D008070 2.9e-11 70.9 43 72.1
Zm00001eb215700 Zea mays HOM05D006553 ORTHO05D008070 2.9e-11 70.9 43 72.1
Aa31LG3G2660 Aethionema arabicum HOM05D006553 ORTHO05D008070 3.8e-11 70.5 43 74.4
Migut.L01780 Erythranthe guttata HOM05D006553 ORTHO05D008070 3.8e-11 70.5 43 72.1
Nitab4.5_0013616g0010 Nicotiana tabacum HOM05D006553 ORTHO05D008070 3.8e-11 70.5 44 75.0
Zm00001eb049670 Zea mays HOM05D006553 ORTHO05D008070 3.8e-11 70.5 43 69.8
Sc20g0006300 Simmondsia chinensis HOM05D006553 ORTHO05D008070 5.0e-11 70.1 43 72.1
BcaNung06241 Brassica carinata HOM05D006553 ORTHO05D008070 6.5e-11 69.7 43 74.4
A05p38960 Brassica napus HOM05D006553 ORTHO05D008070 6.5e-11 69.7 43 74.4
SalBow5G0069 Salvia bowleyana HOM05D006553 ORTHO05D008070 6.5e-11 69.7 43 72.1
Ah.08g210560 Amaranthus hybridus HOM05D006553 ORTHO05D008070 1.1e-10 68.9 43 72.1
Sp3g08410 Schrenkiella parvula HOM05D006553 ORTHO05D008070 1.4e-10 68.6 43 74.4
PSO339G0456 Papaver somniferum HOM05D006553 ORTHO05D008070 2.5e-10 67.8 43 67.4
PSO384G2101 Papaver somniferum HOM05D006553 ORTHO05D008070 2.5e-10 67.8 43 67.4
Aqoxy2G01179 Aquilegia oxysepala HOM05D006553 ORTHO05D008070 3.2e-10 67.4 43 69.8
AagrBONN_evm.TU.Sc2ySwM_117.1600 Anthoceros agrestis HOM05D006553 ORTHO05D008070 2.1e-09 64.7 41 68.3
unitig_8.g4964 Utricularia gibba HOM05D006553 ORTHO05D008070 2.1e-09 64.7 43 69.8
Lj3A997G43 Lonicera japonica HOM05D006553 ORTHO05D008070 1.5e-07 58.5 60 56.7
Mapoly0131s0003 Marchantia polymorpha HOM05D006553 ORTHO05D008070 3.3e-07 57.4 43 53.5
Zm00001eb034360 Zea mays HOM05D006553 ORTHO05D008070 3.3e-07 57.4 35 71.4
Pp3c23_15420 Physcomitrium patens HOM05D006553 ORTHO05D008070 2.2e-06 54.7 43 51.2
TWI77G0984 Tripterygium wilfordii HOM05D006553 ORTHO05D008070 6.3e-06 53.1 24 95.8


User provided reference genes

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