Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0159421 Rosa chinensis HOM05D008160 ORTHO05D009635 3.2e-75 285.0 145 100.0
RcHm_v2.0_Chr2g0159311 Rosa chinensis HOM05D008160 ORTHO05D009635 1.3e-73 279.6 145 97.9
FAN02G3260 Fragaria x ananassa HOM05D008160 ORTHO05D009635 7.1e-59 230.7 146 83.6
FAN09G3148 Fragaria x ananassa HOM05D008160 ORTHO05D009635 7.8e-58 227.3 146 82.9
FvH4_6g43200 Fragaria vesca HOM05D008160 ORTHO05D009635 2.3e-57 225.7 147 83.0
FAN10G1253 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.1e-54 216.9 150 79.3
FAN14G2424 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.1e-54 216.9 150 79.3
Prupe.3G217400 Prunus persica HOM05D008160 ORTHO05D009635 3.4e-29 132.1 144 54.2
MD09G1108700 Malus domestica HOM05D008160 ORTHO05D009635 1.3e-25 120.2 153 52.9
Lj3g0006762 Lotus japonicus HOM05D008160 ORTHO05D009635 2.2e-15 86.3 152 38.2
CiPaw.03G160200 Carya illinoinensis HOM05D008160 ORTHO05D009635 2.4e-14 82.8 151 40.4
COL.COLO4_27706 Corchorus olitorius HOM05D008160 ORTHO05D009635 5.9e-13 78.2 160 40.0
TPR.G4649 Trifolium pratense HOM05D008160 ORTHO05D009635 7.7e-13 77.8 152 37.5
Gohir.D02G133900 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.3e-12 77.0 97 52.6
Gorai.005G149800 Gossypium raimondii HOM05D008160 ORTHO05D009635 1.3e-12 77.0 97 52.6
Haze_12867 Corylus avellana HOM05D008160 ORTHO05D009635 1.7e-12 76.6 99 51.5
Glyma.13G308600 Glycine max HOM05D008160 ORTHO05D009635 1.7e-12 76.6 143 41.3
Cfa014402 Carpinus fangiana HOM05D008160 ORTHO05D009635 2.9e-12 75.9 162 38.9
QL06p012138 Quercus lobata HOM05D008160 ORTHO05D009635 5.0e-12 75.1 151 39.1
QL08p033125 Quercus lobata HOM05D008160 ORTHO05D009635 5.0e-12 75.1 151 39.1
Dinv05432 Davidia involucrata HOM05D008160 ORTHO05D009635 1.1e-11 73.9 136 41.9
Glyma.12G193900 Glycine max HOM05D008160 ORTHO05D009635 1.1e-11 73.9 142 40.1
CANSAT64G2131 Cannabis sativa HOM05D008160 ORTHO05D009635 1.4e-11 73.6 159 37.1
Gohir.A03G108800 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.5e-11 72.8 97 50.5
CiPaw.04G116300 Carya illinoinensis HOM05D008160 ORTHO05D009635 9.4e-11 70.9 153 39.2
Thecc.02G314100 Theobroma cacao HOM05D008160 ORTHO05D009635 9.4e-11 70.9 160 38.1
Eucgr.A01130 Eucalyptus grandis HOM05D008160 ORTHO05D009635 1.2e-10 70.5 141 39.7
Glyma.12G099100 Glycine max HOM05D008160 ORTHO05D009635 1.2e-10 70.5 153 36.6
Glyma.06G305400 Glycine max HOM05D008160 ORTHO05D009635 1.6e-10 70.1 151 34.4
TWI36G0727 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 1.6e-10 70.1 158 39.2
ClCG02G008690 Citrullus lanatus HOM05D008160 ORTHO05D009635 2.1e-10 69.7 153 37.9
PGSC0003DMG400028963 Solanum tuberosum HOM05D046998 ORTHO05D009635 2.1e-10 69.7 157 36.9
LjContig00412g0003580 Lotus japonicus HOM05D008160 ORTHO05D009635 2.7e-10 69.3 146 37.0
Lalb_Chr03g0028751 Lupinus albus HOM05D008160 ORTHO05D009635 2.7e-10 69.3 131 39.7
Lalb_Chr19g0135851 Lupinus albus HOM05D008160 ORTHO05D009635 3.6e-10 68.9 154 37.7
Psat7g157360 Pisum sativum HOM05D008160 ORTHO05D009635 3.6e-10 68.9 151 33.8
TAR626G0785 Trochodendron aralioides HOM05D008160 ORTHO05D009635 3.6e-10 68.9 153 39.2
Medtr4g048060 Medicago truncatula HOM05D008160 ORTHO05D009635 4.6e-10 68.6 153 35.3
Ca_26933_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 6.1e-10 68.2 151 37.7
Gohir.D13G088500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 3.0e-09 65.9 144 38.2
Manes.12G074700 Manihot esculenta HOM05D008160 ORTHO05D009635 5.1e-09 65.1 142 38.0
Potri.014G153200 Populus trichocarpa HOM05D008160 ORTHO05D009635 6.7e-09 64.7 156 38.5
TWI75G1754 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 6.7e-09 64.7 149 36.9
Cpa.g.sc8.214 Carica papaya HOM05D008160 ORTHO05D009635 2.0e-08 63.2 154 33.8
CsaV3_2G034970 Cucumis sativus L. HOM05D008160 ORTHO05D009635 2.0e-08 63.2 158 37.3
Hma1.2p1_0328F.1_g126920 Hydrangea macrophylla HOM05D008160 ORTHO05D009635 2.0e-08 63.2 77 54.5
Potri.002G229300 Populus trichocarpa HOM05D008160 ORTHO05D009635 2.5e-08 62.8 154 33.8
MELO3C019266.2 Cucumis melo HOM05D008160 ORTHO05D009635 3.3e-08 62.4 157 34.4
Gorai.013G101200 Gossypium raimondii HOM05D008160 ORTHO05D009635 7.4e-08 61.2 142 36.6
Gohir.A13G094500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 9.7e-08 60.8 142 35.2
Nn1g03539 Nelumbo nucifera HOM05D008160 ORTHO05D009635 9.7e-08 60.8 142 34.5
VMungo1127G0429 Vigna mungo HOM05D008160 ORTHO05D009635 1.3e-07 60.5 147 34.7
PGR042G1178 Punica granatum HOM05D008160 ORTHO05D009635 1.7e-07 60.1 143 38.5
TPR.G4242 Trifolium pratense HOM05D008160 ORTHO05D009635 1.7e-07 60.1 145 35.9
Phvul.011G104000 Phaseolus vulgaris HOM05D008160 ORTHO05D009635 2.2e-07 59.7 148 33.8
ATR0752G071 Amborella trichopoda HOM05D008160 ORTHO05D009635 6.3e-07 58.2 105 40.0
PSO675G3123 Papaver somniferum HOM05D067469 ORTHO05D009635 8.2e-07 57.8 156 32.1
Sabra02G0175400 Salix brachista HOM05D008160 ORTHO05D009635 8.2e-07 57.8 152 34.9
Sed0017088 Sechium edule HOM05D008160 ORTHO05D009635 1.1e-06 57.4 147 32.7
Sopen07g025980 Solanum pennellii HOM05D046998 ORTHO05D009635 1.1e-06 57.4 152 33.6
Ca_01599_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 2.4e-06 56.2 131 35.9
TAR624G1256 Trochodendron aralioides HOM05D008160 ORTHO05D009635 4.1e-06 55.5 151 33.8
PSO541G0116 Papaver somniferum HOM05D067469 ORTHO05D009635 5.3e-06 55.1 156 30.1
Rhsim04G0053300 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.9e-06 54.7 80 48.8


User provided reference genes

Program Settings