Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0159311 Rosa chinensis HOM05D008160 ORTHO05D009635 4.1e-75 284.6 145 100.0
RcHm_v2.0_Chr2g0159421 Rosa chinensis HOM05D008160 ORTHO05D009635 1.7e-73 279.3 145 97.9
FAN02G3260 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.1e-59 233.4 146 84.2
FAN09G3148 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.2e-58 229.9 146 83.6
FvH4_6g43200 Fragaria vesca HOM05D008160 ORTHO05D009635 3.5e-58 228.4 147 83.7
FAN10G1253 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.6e-55 219.5 150 80.0
FAN14G2424 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.6e-55 219.5 150 80.0
Prupe.3G217400 Prunus persica HOM05D008160 ORTHO05D009635 3.4e-29 132.1 144 53.5
MD09G1108700 Malus domestica HOM05D008160 ORTHO05D009635 4.6e-26 121.7 153 52.9
Lj3g0006762 Lotus japonicus HOM05D008160 ORTHO05D009635 6.3e-15 84.7 152 38.8
CiPaw.03G160200 Carya illinoinensis HOM05D008160 ORTHO05D009635 9.0e-14 80.9 151 39.7
COL.COLO4_27706 Corchorus olitorius HOM05D008160 ORTHO05D009635 1.7e-12 76.6 160 40.0
Gohir.A03G108800 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.2e-12 76.3 97 52.6
Gohir.D02G133900 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.2e-12 76.3 97 53.6
Gorai.005G149800 Gossypium raimondii HOM05D008160 ORTHO05D009635 2.2e-12 76.3 97 53.6
Cfa014402 Carpinus fangiana HOM05D008160 ORTHO05D009635 2.9e-12 75.9 164 37.8
TPR.G4649 Trifolium pratense HOM05D008160 ORTHO05D009635 2.9e-12 75.9 154 37.0
CANSAT64G2131 Cannabis sativa HOM05D008160 ORTHO05D009635 5.0e-12 75.1 159 37.1
Haze_12867 Corylus avellana HOM05D008160 ORTHO05D009635 5.0e-12 75.1 99 50.5
Glyma.13G308600 Glycine max HOM05D008160 ORTHO05D009635 1.4e-11 73.6 143 39.9
QL06p012138 Quercus lobata HOM05D008160 ORTHO05D009635 1.9e-11 73.2 151 38.4
QL08p033125 Quercus lobata HOM05D008160 ORTHO05D009635 1.9e-11 73.2 151 38.4
Dinv05432 Davidia involucrata HOM05D008160 ORTHO05D009635 4.2e-11 72.0 136 41.2
Eucgr.A01130 Eucalyptus grandis HOM05D008160 ORTHO05D009635 5.5e-11 71.6 141 39.7
Lalb_Chr19g0135851 Lupinus albus HOM05D008160 ORTHO05D009635 5.5e-11 71.6 154 38.3
Glyma.12G193900 Glycine max HOM05D008160 ORTHO05D009635 7.2e-11 71.2 142 38.7
Thecc.02G314100 Theobroma cacao HOM05D008160 ORTHO05D009635 7.2e-11 71.2 160 38.8
TWI36G0727 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 7.2e-11 71.2 158 39.9
Medtr4g048060 Medicago truncatula HOM05D008160 ORTHO05D009635 9.4e-11 70.9 153 34.0
Glyma.06G305400 Glycine max HOM05D008160 ORTHO05D009635 1.2e-10 70.5 153 34.0
ClCG02G008690 Citrullus lanatus HOM05D008160 ORTHO05D009635 2.7e-10 69.3 153 37.9
Glyma.12G099100 Glycine max HOM05D008160 ORTHO05D009635 3.6e-10 68.9 155 34.8
Lalb_Chr03g0028751 Lupinus albus HOM05D008160 ORTHO05D009635 3.6e-10 68.9 131 38.9
PGSC0003DMG400028963 Solanum tuberosum HOM05D046998 ORTHO05D009635 4.6e-10 68.6 154 37.0
TAR626G0785 Trochodendron aralioides HOM05D008160 ORTHO05D009635 4.6e-10 68.6 153 39.2
CiPaw.04G116300 Carya illinoinensis HOM05D008160 ORTHO05D009635 6.1e-10 68.2 153 37.9
Ca_26933_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 7.9e-10 67.8 151 37.7
LjContig00412g0003580 Lotus japonicus HOM05D008160 ORTHO05D009635 7.9e-10 67.8 145 35.2
Psat7g157360 Pisum sativum HOM05D008160 ORTHO05D009635 1.8e-09 66.6 151 34.4
MELO3C019266.2 Cucumis melo HOM05D008160 ORTHO05D009635 3.0e-09 65.9 157 35.0
Manes.12G074700 Manihot esculenta HOM05D008160 ORTHO05D009635 6.7e-09 64.7 142 38.0
Cpa.g.sc8.214 Carica papaya HOM05D008160 ORTHO05D009635 2.0e-08 63.2 154 33.8
Gohir.D13G088500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.0e-08 63.2 145 37.9
Potri.002G229300 Populus trichocarpa HOM05D008160 ORTHO05D009635 2.5e-08 62.8 154 33.8
Potri.014G153200 Populus trichocarpa HOM05D008160 ORTHO05D009635 3.3e-08 62.4 153 38.6
PGR042G1178 Punica granatum HOM05D008160 ORTHO05D009635 4.3e-08 62.0 143 39.9
TWI75G1754 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 4.3e-08 62.0 149 36.2
CsaV3_2G034970 Cucumis sativus L. HOM05D008160 ORTHO05D009635 5.7e-08 61.6 158 36.1
Nn1g03539 Nelumbo nucifera HOM05D008160 ORTHO05D009635 9.7e-08 60.8 142 34.5
TPR.G4242 Trifolium pratense HOM05D008160 ORTHO05D009635 1.3e-07 60.5 145 35.9
Hma1.2p1_0328F.1_g126920 Hydrangea macrophylla HOM05D008160 ORTHO05D009635 1.7e-07 60.1 77 53.2
Phvul.011G104000 Phaseolus vulgaris HOM05D008160 ORTHO05D009635 2.2e-07 59.7 148 33.8
ATR0752G071 Amborella trichopoda HOM05D008160 ORTHO05D009635 6.3e-07 58.2 105 40.0
Sabra02G0175400 Salix brachista HOM05D008160 ORTHO05D009635 6.3e-07 58.2 153 34.0
PSO675G3123 Papaver somniferum HOM05D067469 ORTHO05D009635 8.2e-07 57.8 161 31.7
Sed0017088 Sechium edule HOM05D008160 ORTHO05D009635 8.2e-07 57.8 147 32.7
Sopen07g025980 Solanum pennellii HOM05D046998 ORTHO05D009635 8.2e-07 57.8 154 35.1
VMungo1127G0429 Vigna mungo HOM05D008160 ORTHO05D009635 1.4e-06 57.0 147 33.3
Gorai.013G101200 Gossypium raimondii HOM05D008160 ORTHO05D009635 1.8e-06 56.6 142 35.2
Gohir.A13G094500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.4e-06 56.2 142 33.8
Atru.chr6.3179 Acer truncatum HOM05D008160 ORTHO05D009635 4.1e-06 55.5 87 39.1
TAR624G1256 Trochodendron aralioides HOM05D008160 ORTHO05D009635 5.3e-06 55.1 151 33.8
Rhsim04G0053300 Rhododendron simsii HOM05D000003 ORTHO05D000006 9.1e-06 54.3 77 50.6


User provided reference genes

Program Settings