Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 1.4e-66 256.1 127 100.0
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.6e-62 242.7 128 95.3
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.6e-62 241.1 128 94.5
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.7e-61 239.2 128 93.8
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.1e-61 237.7 128 94.5
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 6.6e-61 237.3 128 93.8
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.1e-59 232.3 128 91.4
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 1.4e-50 203.0 129 79.8
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 3.4e-49 198.4 128 78.1
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 1.3e-48 196.4 129 76.7
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 3.4e-41 171.8 129 70.5
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 8.7e-37 157.1 142 62.7
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 4.3e-36 154.8 141 61.7
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 7.4e-36 154.1 139 61.9
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.3e-35 153.3 142 59.2
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 9.0e-34 147.1 133 61.7
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.0e-33 146.0 134 64.2
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.0e-33 146.0 134 64.2
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 8.4e-32 140.6 137 62.0
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 2.4e-31 139.0 137 62.0
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 4.2e-31 138.3 129 63.6
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 4.2e-31 138.3 131 60.3
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 2.1e-30 136.0 133 59.4
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.3e-29 133.3 137 58.4
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 1.8e-29 132.9 129 60.5
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 5.1e-29 131.3 137 57.7
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.6e-27 126.3 137 56.9
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 1.6e-27 126.3 123 53.7
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.8e-27 124.8 136 55.1
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 6.2e-27 124.4 123 56.1
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 3.1e-26 122.1 135 53.3
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 2.0e-25 119.4 126 59.5
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 4.5e-25 118.2 129 55.0
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.5e-25 118.2 123 52.0
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 4.5e-25 118.2 123 52.8
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 4.5e-25 118.2 126 55.6
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.3e-24 116.7 124 50.0
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 1.3e-24 116.7 124 56.5
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 1.3e-24 116.7 130 55.4
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.9e-24 114.8 123 52.0
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 6.5e-24 114.4 127 54.3
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 6.5e-24 114.4 127 53.5
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 1.1e-23 113.6 122 54.9
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 1.4e-23 113.2 123 51.2
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 1.9e-23 112.8 147 47.6
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 4.2e-23 111.7 131 54.2
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.2e-22 110.2 123 52.8
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 1.2e-22 110.2 127 54.3
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.6e-22 109.8 139 49.6
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 3.5e-22 108.6 133 50.4
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 3.5e-22 108.6 124 54.8
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 4.6e-22 108.2 130 51.5
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.3e-21 106.7 123 51.2
FAN25G0828 Fragaria x ananassa HOM05D000531 ORTHO05D000877 1.8e-21 106.3 64 85.9
FAN25G2216 Fragaria x ananassa HOM05D000531 ORTHO05D000877 1.8e-21 106.3 64 85.9
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 3.0e-21 105.5 122 52.5
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 8.7e-21 104.0 127 51.2
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 8.7e-21 104.0 135 49.6
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.5e-20 103.2 123 49.6
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 3.3e-20 102.1 139 48.2
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 7.4e-20 100.9 120 52.5
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.2e-19 99.4 125 52.0
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.2e-19 99.4 125 52.0
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 2.8e-19 99.0 141 48.9
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 3.7e-19 98.6 132 49.2
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.4e-18 96.7 134 48.5
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 2.4e-18 95.9 120 51.7
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 3.1e-18 95.5 134 46.3
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 4.5e-17 91.7 130 42.3
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 3.8e-16 88.6 136 44.1
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 5.0e-16 88.2 143 41.3
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 5.0e-16 88.2 127 49.6
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 2.5e-15 85.9 111 49.5
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 2.5e-15 85.9 132 46.2
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 7.2e-15 84.3 124 43.5
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 1.0e-13 80.5 139 43.9
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 3.0e-13 79.0 136 41.9
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 8.8e-13 77.4 126 41.3
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 8.8e-13 77.4 102 50.0
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 3.3e-12 75.5 117 45.3
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 5.7e-12 74.7 123 40.7
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 1.1e-10 70.5 131 38.9
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.4e-10 70.1 136 36.8
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.8e-10 69.7 125 39.2
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 2.4e-10 69.3 102 46.1
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 5.3e-10 68.2 126 39.7
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 5.3e-10 68.2 135 37.8
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 6.9e-10 67.8 123 43.1
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 9.1e-10 67.4 89 48.3
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 3.4e-09 65.5 127 37.0
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 3.4e-09 65.5 87 48.3
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 3.4e-09 65.5 121 37.2
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 5.9e-09 64.7 146 32.9
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 7.7e-09 64.3 118 39.0
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 7.7e-09 64.3 89 42.7
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.7e-08 63.2 129 36.4
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 2.2e-08 62.8 130 40.0
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 2.9e-08 62.4 96 39.6
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.8e-08 62.0 132 36.4
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 3.8e-08 62.0 121 38.0
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 5.0e-08 61.6 129 36.4
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 5.0e-08 61.6 118 39.0
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 6.5e-08 61.2 123 36.6
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 6.5e-08 61.2 137 36.5
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 8.5e-08 60.8 127 33.9
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 8.5e-08 60.8 129 34.1
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.4e-07 60.1 132 35.6
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.4e-07 60.1 132 35.6
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 1.9e-07 59.7 110 37.3
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 1.9e-07 59.7 95 43.2
Zm00001eb431260 Zea mays HOM05D007398 ORTHO05D004912 1.9e-07 59.7 135 34.1
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 3.2e-07 58.9 119 38.7
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 3.2e-07 58.9 128 37.5
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 3.2e-07 58.9 96 43.8
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 3.2e-07 58.9 114 36.8
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 5.5e-07 58.2 139 37.4
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 7.2e-07 57.8 107 42.1
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 7.2e-07 57.8 121 38.0
Lj1g0009560 Lotus japonicus HOM05D011727 ORTHO05D004912 9.4e-07 57.4 87 43.7
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 1.2e-06 57.0 102 38.2
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.6e-06 56.6 98 41.8
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.6e-06 56.6 125 35.2
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 2.1e-06 56.2 105 40.0
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 3.6e-06 55.5 104 38.5
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 4.7e-06 55.1 95 36.8
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 4.7e-06 55.1 90 46.7
PGSC0003DMG400016452 Solanum tuberosum HOM05D011575 ORTHO05D004912 4.7e-06 55.1 99 36.4
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 6.1e-06 54.7 126 35.7
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 6.1e-06 54.7 128 34.4
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 7.9e-06 54.3 101 39.6
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 7.9e-06 54.3 128 34.4
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 7.9e-06 54.3 128 34.4
ClCG03G014620 Citrullus lanatus HOM05D032147 ORTHO05D034646 7.9e-06 54.3 123 37.4
Glyma.13G082600 Glycine max HOM05D011727 ORTHO05D004912 7.9e-06 54.3 104 42.3


User provided reference genes

Program Settings