Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158881 Rosa chinensis HOM05D000570 ORTHO05D025796 8.0e-143 510.4 252 100.0
FAN05G1282 Fragaria x ananassa HOM05D000570 ORTHO05D005344 1.7e-23 114.0 201 37.8
THA.LOC104826765 Tarenaya hassleriana HOM05D000570 ORTHO05D005344 1.6e-21 107.5 196 40.3
MD12G1060500 Malus domestica HOM05D000570 ORTHO05D005344 3.0e-20 103.2 191 37.2
RcHm_v2.0_Chr3g0480221 Rosa chinensis HOM05D000570 ORTHO05D005344 1.5e-19 100.9 107 49.5
Prupe.7G074000 Prunus persica HOM05D000570 ORTHO05D005344 7.3e-19 98.6 106 50.9
Cpa.g.sc85.86 Carica papaya HOM05D000570 ORTHO05D005344 4.7e-18 95.9 156 42.9
Glyma.03G143000 Glycine max HOM05D000570 ORTHO05D005344 6.2e-18 95.5 160 40.0
FvH4_6g22660 Fragaria vesca HOM05D000570 ORTHO05D005344 1.1e-17 94.7 112 45.5
FAN14G2151 Fragaria x ananassa HOM05D000570 ORTHO05D005344 1.1e-17 94.7 112 45.5
FAN02G0851 Fragaria x ananassa HOM05D000570 ORTHO05D005344 1.4e-17 94.4 111 45.9
FAN14G3986 Fragaria x ananassa HOM05D000570 ORTHO05D005344 3.1e-17 93.2 112 44.6
TPR.G13237 Trifolium pratense HOM05D000570 ORTHO05D005344 1.5e-16 90.9 182 34.1
QL07p023168 Quercus lobata HOM05D000570 ORTHO05D005344 2.6e-16 90.1 107 50.5
BcaB01g06020 Brassica carinata HOM05D000570 ORTHO05D005344 5.8e-16 89.0 193 35.8
Psat6g092440 Pisum sativum HOM05D000570 ORTHO05D005344 5.8e-16 89.0 137 41.6
CAN.G654.5 Capsicum annuum HOM05D000570 ORTHO05D005344 1.3e-15 87.8 197 31.5
Atru.chr8.1053 Acer truncatum HOM05D000570 ORTHO05D005344 1.1e-14 84.7 201 34.3
PSO339G1505 Papaver somniferum HOM05D000570 ORTHO05D005344 1.1e-14 84.7 197 33.0
Sed0020739 Sechium edule HOM05D000570 ORTHO05D005344 1.1e-14 84.7 171 36.8
CsaV3_3G038990 Cucumis sativus L. HOM05D000570 ORTHO05D005344 2.4e-14 83.6 164 35.4
COL.COLO4_28750 Corchorus olitorius HOM05D000570 ORTHO05D016963 3.2e-14 83.2 143 37.8
arahy.Tifrunner.gnm1.ann1.7J08Q6 Arachis hypogaea HOM05D000570 ORTHO05D005344 4.1e-14 82.8 175 37.1
MD14G1060500 Malus domestica HOM05D000570 ORTHO05D005344 1.2e-13 81.3 112 44.6
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 2.7e-13 80.1 152 36.8
ClCG10G017390 Citrullus lanatus HOM05D000570 ORTHO05D005344 3.5e-13 79.7 171 33.3
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 7.8e-13 78.6 114 43.0
THA.LOC104809924 Tarenaya hassleriana HOM05D000570 ORTHO05D005344 7.8e-13 78.6 206 33.5
Lalb_Chr18g0047751 Lupinus albus HOM05D000570 ORTHO05D005344 1.0e-12 78.2 245 31.8
Ca_08507_v3 Cicer arietinum L. HOM05D000570 ORTHO05D005344 2.3e-12 77.0 197 32.5
BraA03t09654Z Brassica rapa HOM05D000570 ORTHO05D005344 3.9e-12 76.3 194 33.5
Carub.0006s0571 Capsella rubella HOM05D000570 ORTHO05D005344 8.6e-12 75.1 207 32.9
CARHR206350 Cardamine hirsuta HOM05D000570 ORTHO05D005344 1.9e-11 73.9 191 35.6
Thhalv10012782m.g Eutrema salsugineum HOM05D000570 ORTHO05D005344 3.3e-11 73.2 139 37.4
Glyma.02G177000 Glycine max HOM05D000570 ORTHO05D005344 3.3e-11 73.2 131 38.9
BcaC06g32539 Brassica carinata HOM05D000570 ORTHO05D005344 4.3e-11 72.8 165 34.5
MBI04_g46721_MAGBIO Magnolia biondii HOM05D000570 ORTHO05D016963 4.3e-11 72.8 117 40.2
AT5G06820 Arabidopsis thaliana HOM05D000570 ORTHO05D005344 7.3e-11 72.0 159 35.2
COL.COLO4_36137 Corchorus olitorius HOM05D000570 ORTHO05D005344 1.2e-10 71.2 195 30.8
HanXRQChr05g0132831 Helianthus annuus HOM05D000570 ORTHO05D005344 1.2e-10 71.2 178 30.9
AL6G16940 Arabidopsis lyrata HOM05D000570 ORTHO05D005344 1.6e-10 70.9 136 38.2
Cfa016901 Carpinus fangiana HOM05D000570 ORTHO05D005344 1.6e-10 70.9 164 34.8
Haze_19964 Corylus avellana HOM05D000570 ORTHO05D005344 1.6e-10 70.9 164 34.1
Aqoxy1G00160 Aquilegia oxysepala HOM05D000570 ORTHO05D005344 2.8e-10 70.1 107 40.2
BolC3t12877H Brassica oleracea HOM05D000570 ORTHO05D005344 6.2e-10 68.9 187 33.7
Lj5g0016632 Lotus japonicus HOM05D000570 ORTHO05D005344 6.2e-10 68.9 86 43.0
arahy.Tifrunner.gnm1.ann1.F2TBWJ Arachis hypogaea HOM05D000570 ORTHO05D005344 8.1e-10 68.6 175 33.7
Lalb_Chr21g0317081 Lupinus albus HOM05D000570 ORTHO05D005344 8.1e-10 68.6 106 39.6
Aqoxy1G00120 Aquilegia oxysepala HOM05D000570 ORTHO05D005344 1.4e-09 67.8 107 39.3
Lsat_1_v5_gn_8_75600 Lactuca sativa HOM05D000570 ORTHO05D005344 1.8e-09 67.4 129 34.9
SalBow6G0661 Salvia bowleyana HOM05D000570 ORTHO05D005344 1.8e-09 67.4 108 39.8
BcaC06g32398 Brassica carinata HOM05D000570 ORTHO05D005344 2.3e-09 67.0 187 31.6
C09p69920 Brassica napus HOM05D000570 ORTHO05D005344 2.3e-09 67.0 187 31.6
Oeu033186.1 Olea europaea HOM05D000570 ORTHO05D005344 2.3e-09 67.0 118 35.6
Medtr7g092910 Medicago truncatula HOM05D000570 ORTHO05D005344 3.1e-09 66.6 200 31.5
Psat3g069640 Pisum sativum HOM05D000570 ORTHO05D005344 3.1e-09 66.6 197 29.4
VMungo1383G1212 Vigna mungo HOM05D000570 ORTHO05D005344 3.1e-09 66.6 80 48.8
HanXRQChr06g0176301 Helianthus annuus HOM05D000570 ORTHO05D005344 4.0e-09 66.2 145 33.1
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 5.2e-09 65.9 105 40.0
Sabra06G0146200 Salix brachista HOM05D000570 ORTHO05D005344 5.2e-09 65.9 151 35.1
CANSAT64G1251 Cannabis sativa HOM05D000570 ORTHO05D005344 6.8e-09 65.5 160 32.5
A10p29550 Brassica napus HOM05D000570 ORTHO05D005344 8.9e-09 65.1 190 31.1
BraA10t44998Z Brassica rapa HOM05D000570 ORTHO05D005344 8.9e-09 65.1 190 31.1
Cc00_g14620 Coffea canephora HOM05D000570 ORTHO05D005344 8.9e-09 65.1 128 39.1
Prupe.6G256200 Prunus persica HOM05D000570 ORTHO05D005344 8.9e-09 65.1 85 47.1
SGA_v2.0_scaffold2G00982 Striga asiatica HOM05D002357 ORTHO05D002676 8.9e-09 65.1 175 32.0
Aa31LG11G7680 Aethionema arabicum HOM05D000570 ORTHO05D005344 1.2e-08 64.7 138 37.7
Phvul.007G258000 Phaseolus vulgaris HOM05D000570 ORTHO05D005344 1.2e-08 64.7 106 38.7
CsaV3_3G038980 Cucumis sativus L. HOM05D000570 ORTHO05D005344 2.0e-08 63.9 86 41.9
FvH4_6g22260 Fragaria vesca HOM05D000570 ORTHO05D005344 2.0e-08 63.9 79 40.5
Sp6g36040 Schrenkiella parvula HOM05D001504 ORTHO05D005344 2.6e-08 63.5 142 34.5
C03p03350 Brassica napus HOM05D000570 ORTHO05D005344 3.4e-08 63.2 172 32.0
Ca_26116_v3 Cicer arietinum L. HOM05D000570 ORTHO05D005344 4.4e-08 62.8 86 43.0
DCAR_025610 Daucus carota HOM05D000570 ORTHO05D005344 4.4e-08 62.8 76 43.4
Psat0s5999g0080 Pisum sativum HOM05D039369 ORTHO05D005344 4.4e-08 62.8 50 62.0
TPR.G24915 Trifolium pratense HOM05D000570 ORTHO05D005344 4.4e-08 62.8 87 42.5
A03p02910 Brassica napus HOM05D000570 ORTHO05D005344 5.8e-08 62.4 172 32.0
vmacro07934 Vaccinium macrocarpon HOM05D000570 ORTHO05D005344 9.9e-08 61.6 86 38.4
MBI04_g32798_MAGBIO Magnolia biondii HOM05D026410 ORTHO05D016963 1.3e-07 61.2 156 33.3
MBI17_g19803_MAGBIO Magnolia biondii HOM05D025431 ORTHO05D025796 1.3e-07 61.2 48 62.5
Medtr1g053525 Medicago truncatula HOM05D000570 ORTHO05D005344 1.3e-07 61.2 67 47.8
Sopen03g013070 Solanum pennellii HOM05D000570 ORTHO05D005344 1.7e-07 60.8 118 33.9
Potri.006G190700 Populus trichocarpa HOM05D000570 ORTHO05D005344 2.9e-07 60.1 148 33.8
VMungo0720G2297 Vigna mungo HOM05D000570 ORTHO05D005344 2.9e-07 60.1 63 50.8
Gorai.006G141800 Gossypium raimondii HOM05D000570 ORTHO05D005344 3.7e-07 59.7 196 29.1
Gohir.D09G123280 Gossypium hirsutum HOM05D000570 ORTHO05D005344 6.4e-07 58.9 196 29.1
RcHm_v2.0_Chr3g0476861 Rosa chinensis HOM05D000570 ORTHO05D005344 6.4e-07 58.9 42 59.5
Gohir.A09G126900 Gossypium hirsutum HOM05D000570 ORTHO05D005344 8.3e-07 58.5 196 29.1
Sed0012691 Sechium edule HOM05D000570 ORTHO05D005344 1.9e-06 57.4 86 39.5
Ah.13g076090 Amaranthus hybridus HOM05D000570 ORTHO05D005344 7.1e-06 55.5 137 34.3
Sc13g0002150 Simmondsia chinensis HOM05D000570 ORTHO05D005344 7.1e-06 55.5 103 35.9
FAN09G4228 Fragaria x ananassa HOM05D000570 ORTHO05D005344 9.2e-06 55.1 84 40.5
TWI77G0256 Tripterygium wilfordii HOM05D000570 ORTHO05D005344 9.2e-06 55.1 247 25.1


User provided reference genes

Program Settings