Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 1.7e-160 569.3 287 100.0
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.5e-145 517.3 287 90.9
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.5e-145 517.3 287 90.9
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 2.8e-144 515.4 287 90.6
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.8e-143 512.7 287 89.9
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.2e-136 489.2 287 86.8
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.2e-134 483.4 292 84.9
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 4.4e-129 464.9 274 84.3
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.1e-127 460.3 285 81.4
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 5.4e-127 458.0 287 82.9
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.7e-125 453.0 265 84.2
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 3.0e-125 452.2 289 81.0
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 2.5e-124 449.1 281 81.5
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.5e-124 449.1 280 81.8
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 9.5e-124 447.2 288 79.5
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.6e-123 446.4 278 80.2
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.6e-123 446.4 284 80.6
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 4.7e-123 444.9 253 85.4
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 8.0e-123 444.1 271 83.8
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.8e-122 443.0 288 78.5
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.8e-122 443.0 288 78.5
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 4.0e-122 441.8 279 80.6
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.8e-122 441.0 278 81.7
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.6e-121 439.1 253 84.2
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 5.8e-121 438.0 244 86.5
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 7.5e-121 437.6 253 85.0
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 1.3e-120 436.8 286 77.6
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 8.3e-120 434.1 254 85.0
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.1e-119 433.7 269 78.1
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 1.1e-119 433.7 240 86.2
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.9e-119 433.0 262 82.4
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 7.0e-119 431.0 277 78.7
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 9.2e-119 430.6 287 75.6
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 1.2e-118 430.3 251 83.3
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.6e-118 429.9 280 77.1
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 2.1e-118 429.5 252 84.1
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.5e-118 428.7 254 83.5
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.6e-118 428.3 239 85.8
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 4.6e-118 428.3 254 83.9
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 6.0e-118 427.9 239 85.4
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 1.3e-117 426.8 254 82.3
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 3.0e-117 425.6 277 77.6
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 3.0e-117 425.6 285 76.8
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 5.1e-117 424.9 285 75.8
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 6.6e-117 424.5 274 78.1
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 8.6e-117 424.1 285 74.7
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.1e-116 423.7 287 74.6
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.1e-116 423.7 250 83.6
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-116 423.3 240 84.6
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.9e-116 422.9 281 74.7
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.9e-116 422.9 249 83.1
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 5.6e-116 421.4 275 76.4
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 5.6e-116 421.4 258 80.2
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 1.6e-115 419.9 251 82.1
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 1.6e-115 419.9 251 82.1
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 2.1e-115 419.5 241 83.0
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 6.2e-115 417.9 275 77.1
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.1e-114 417.2 286 74.8
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 1.4e-114 416.8 273 76.9
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 1.4e-114 416.8 273 76.9
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.4e-114 416.8 236 82.6
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.2e-114 414.8 279 74.6
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 6.8e-114 414.5 275 75.6
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.5e-113 413.3 274 75.5
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 4.4e-113 411.8 275 75.3
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 4.4e-113 411.8 275 75.3
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 5.8e-113 411.4 257 77.0
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 2.2e-112 409.5 241 83.0
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.2e-112 409.5 240 82.5
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 3.7e-112 408.7 241 81.3
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 6.4e-112 407.9 225 87.1
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 6.4e-112 407.9 258 78.3
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 8.3e-112 407.5 250 79.2
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 8.3e-112 407.5 266 75.6
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 1.9e-111 406.4 240 82.1
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 3.2e-111 405.6 244 78.7
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.2e-110 403.7 285 71.9
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 2.7e-110 402.5 248 77.0
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 3.5e-110 402.1 240 81.2
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.5e-110 402.1 244 79.1
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 4.6e-110 401.7 286 70.6
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 6.0e-110 401.4 280 71.8
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 1.3e-109 400.2 238 78.6
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 5.1e-109 398.3 401 56.4
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 6.6e-109 397.9 240 77.9
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 8.6e-109 397.5 233 81.5
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-108 397.1 243 77.8
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.9e-108 396.4 263 74.5
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 3.3e-108 395.6 288 70.8
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 9.5e-108 394.0 271 72.3
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.2e-107 393.7 238 80.3
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 2.8e-107 392.5 275 72.4
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.8e-107 392.5 279 71.7
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 3.6e-107 392.1 248 75.0
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 4.7e-107 391.7 248 75.4
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 6.2e-107 391.3 278 70.9
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 8.1e-107 391.0 295 70.2
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.4e-106 389.4 268 71.6
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 4.0e-106 388.7 241 78.4
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 8.9e-106 387.5 277 70.4
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.0e-105 386.3 252 74.6
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.4e-104 381.3 242 77.3
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 6.4e-104 381.3 277 69.3
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.0e-101 374.0 240 75.4
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.3e-101 372.9 225 79.6
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.8e-98 363.2 224 77.2
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.3e-93 346.3 249 67.9
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.3e-92 342.0 245 70.6
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 7.3e-92 341.3 222 74.3
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.3e-91 340.5 256 66.0
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 6.9e-90 334.7 255 66.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 3.4e-89 332.4 191 83.8
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 1.9e-87 326.6 278 60.1
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.2e-86 323.9 243 63.8
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 4.6e-86 322.0 238 65.5
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 2.8e-83 312.8 177 84.2
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.1e-82 310.8 238 63.9
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 2.4e-82 309.7 226 69.5
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.1e-79 300.8 238 61.3
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 7.1e-79 298.1 287 56.8
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 7.9e-78 294.7 189 75.7
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.6e-75 287.0 182 75.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 4.5e-73 278.9 240 59.6
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.9e-71 273.5 279 52.3
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 6.7e-69 265.0 237 58.6
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 2.4e-66 256.5 300 52.0
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.3e-59 234.2 173 69.9
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 3.7e-59 232.6 127 88.2
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.4e-58 230.7 261 49.8
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 6.9e-58 228.4 223 53.4
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 7.2e-55 218.4 134 79.1
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 2.0e-49 200.3 229 43.7
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.1e-46 188.7 126 74.6
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.3e-43 181.0 108 79.6
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.1e-42 176.4 220 41.8
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.6e-41 173.3 219 42.0
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 5.5e-39 165.6 115 73.0
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 4.4e-36 156.0 117 75.2
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 2.2e-35 153.7 123 65.0
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.1e-34 151.4 162 53.1
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.4e-34 151.0 85 83.5
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 1.6e-30 137.5 86 73.3
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 4.5e-25 119.4 254 31.9
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 1.5e-23 114.4 97 63.9
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.4e-21 107.8 68 75.0
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-17 94.7 182 39.6
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.7e-16 90.9 47 83.0
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 6.1e-14 82.4 86 51.2
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 8.0e-14 82.0 71 59.2
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 3.4e-12 76.6 69 59.4
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 7.8e-09 65.5 232 26.3
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.0e-08 65.1 189 28.6
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 2.3e-08 63.9 241 25.3
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 5.0e-08 62.8 211 28.0
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 5.0e-08 62.8 246 26.4
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 6.6e-08 62.4 231 26.0
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 1.1e-07 61.6 227 23.8
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 1.5e-07 61.2 229 24.0
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 1.5e-07 61.2 243 26.7
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 1.5e-07 61.2 243 26.7
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.5e-07 61.2 199 27.6
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 1.5e-07 61.2 243 26.7
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 2.5e-07 60.5 190 30.0
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 5.6e-07 59.3 229 24.5
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 5.6e-07 59.3 241 29.5
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 7.3e-07 58.9 229 24.5
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 7.3e-07 58.9 229 24.5
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 7.3e-07 58.9 231 27.7
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 9.5e-07 58.5 243 25.9
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 1.6e-06 57.8 244 26.6
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 2.1e-06 57.4 223 25.6
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-06 57.0 28 89.3
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 2.8e-06 57.0 225 24.9
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 2.8e-06 57.0 228 27.2
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 3.6e-06 56.6 235 27.2
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 3.6e-06 56.6 202 27.2
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 4.7e-06 56.2 202 25.2
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 6.2e-06 55.8 228 26.3


User provided reference genes

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