Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158691 Rosa chinensis HOM05D002293 ORTHO05D006850 5.4e-53 210.7 103 100.0
RcHm_v2.0_Chr3g0461771 Rosa chinensis HOM05D002293 ORTHO05D006850 2.7e-52 208.4 103 99.0
RcHm_v2.0_Chr6g0248211 Rosa chinensis HOM05D002293 ORTHO05D006850 2.3e-51 205.3 103 98.1
RcHm_v2.0_Chr5g0074521 Rosa chinensis HOM05D002293 ORTHO05D006850 1.1e-50 203.0 103 97.1
RcHm_v2.0_Chr5g0060841 Rosa chinensis HOM05D002293 ORTHO05D006850 7.3e-50 200.3 103 96.1
RcHm_v2.0_Chr4g0391611 Rosa chinensis HOM05D002293 ORTHO05D006850 8.9e-32 140.2 71 97.2
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.5e-26 120.2 94 68.1
FvH4_1g22881 Fragaria vesca HOM05D002293 ORTHO05D006850 2.1e-25 119.0 94 67.0
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-25 119.0 94 67.0
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.6e-25 118.2 94 67.0
RcHm_v2.0_Chr2g0117221 Rosa chinensis HOM05D002293 ORTHO05D006850 8.1e-25 117.1 94 66.0
Haze_25058 Corylus avellana HOM05D002293 ORTHO05D006850 1.5e-23 112.8 77 72.7
CiPaw.04G090700 Carya illinoinensis HOM05D002293 ORTHO05D006850 4.4e-23 111.3 94 62.8
Prupe.6G169400 Prunus persica HOM05D002293 ORTHO05D006850 4.4e-23 111.3 91 63.7
QL06p031806 Quercus lobata HOM05D002293 ORTHO05D006850 7.6e-23 110.5 85 65.9
arahy.Tifrunner.gnm1.ann1.U9B4SP Arachis hypogaea HOM05D000087 ORTHO05D000439 9.9e-23 110.2 92 64.1
Nn5g28872 Nelumbo nucifera HOM05D002293 ORTHO05D006850 9.9e-23 110.2 75 73.3
Nitab4.5_0004378g0040 Nicotiana tabacum HOM05D002293 ORTHO05D006850 9.9e-23 110.2 92 62.0
A05p39450 Brassica napus HOM05D002293 ORTHO05D006850 1.3e-22 109.8 87 63.2
ClCG01G015990 Citrullus lanatus HOM05D002293 ORTHO05D006850 1.7e-22 109.4 94 61.7
Eucgr.I00313 Eucalyptus grandis HOM05D002293 ORTHO05D006850 1.7e-22 109.4 92 62.0
Nitab4.5_0000818g0200 Nicotiana tabacum HOM05D002293 ORTHO05D006850 1.7e-22 109.4 92 62.0
arahy.Tifrunner.gnm1.ann1.X6B8P2 Arachis hypogaea HOM05D002293 ORTHO05D006850 2.2e-22 109.0 76 71.1
CAN.G871.5 Capsicum annuum HOM05D002293 ORTHO05D006850 2.2e-22 109.0 92 62.0
Dinv19472 Davidia involucrata HOM05D002293 ORTHO05D006850 2.9e-22 108.6 77 70.1
Aqoxy6G00443 Aquilegia oxysepala HOM05D002293 ORTHO05D006850 3.8e-22 108.2 75 72.0
CsaV3_6G042270 Cucumis sativus L. HOM05D002293 ORTHO05D006850 3.8e-22 108.2 94 61.7
Lj4A864T21 Lonicera japonica HOM05D002293 ORTHO05D006850 3.8e-22 108.2 74 73.0
MELO3C007469.2 Cucumis melo HOM05D002293 ORTHO05D006850 4.9e-22 107.8 94 60.6
Oeu044096.1 Olea europaea HOM05D002293 ORTHO05D006850 4.9e-22 107.8 94 59.6
PSO675G5492 Papaver somniferum HOM05D002293 ORTHO05D006850 4.9e-22 107.8 75 72.0
Peaxi162Scf00167g00513 Petunia axillaris HOM05D002293 ORTHO05D006850 4.9e-22 107.8 91 62.6
Sed0022357 Sechium edule HOM05D002293 ORTHO05D006850 6.4e-22 107.5 94 60.6
BraA05t22726Z Brassica rapa HOM05D002293 ORTHO05D006850 8.4e-22 107.1 85 63.5
PGSC0003DMG400030100 Solanum tuberosum HOM05D002293 ORTHO05D006850 8.4e-22 107.1 92 60.9
vmacro18641 Vaccinium macrocarpon HOM05D002293 ORTHO05D006850 8.4e-22 107.1 90 61.1
Actinidia12213 Actinidia chinensis HOM05D002293 ORTHO05D006850 1.4e-21 106.3 104 57.7
CANSAT01G3021 Cannabis sativa HOM05D002293 ORTHO05D006850 1.4e-21 106.3 91 60.4
TWI75G0731 Tripterygium wilfordii HOM05D002293 ORTHO05D006850 1.4e-21 106.3 90 62.2
MD15G1331200 Malus domestica HOM05D002293 ORTHO05D006850 1.9e-21 105.9 92 59.8
Solyc05g051700.3 Solanum lycopersicum HOM05D002293 ORTHO05D006850 1.9e-21 105.9 92 60.9
ATR1120G068 Amborella trichopoda HOM05D002293 ORTHO05D006850 2.4e-21 105.5 86 62.8
BcaC03g13134 Brassica carinata HOM05D002293 ORTHO05D006850 2.4e-21 105.5 78 64.1
Glyma.08G142700 Glycine max HOM05D002293 ORTHO05D006850 2.4e-21 105.5 94 57.4
Os06g0146400 Oryza sativa ssp. japonica HOM05D002293 ORTHO05D006850 2.4e-21 105.5 96 56.2
PSO541G6313 Papaver somniferum HOM05D002293 ORTHO05D006850 2.4e-21 105.5 75 70.7
Rhsim07G0116300 Rhododendron simsii HOM05D002293 ORTHO05D006850 2.4e-21 105.5 92 59.8
Rhsim08G0005400 Rhododendron simsii HOM05D002293 ORTHO05D006850 2.4e-21 105.5 92 59.8
Phvul.002G265600 Phaseolus vulgaris HOM05D002293 ORTHO05D006850 4.2e-21 104.8 94 57.4
Thecc.01G114900 Theobroma cacao HOM05D002293 ORTHO05D006850 4.2e-21 104.8 92 59.8
SalBow5G0495 Salvia bowleyana HOM05D002293 ORTHO05D006850 5.4e-21 104.4 92 59.8
Sopen05g030170 Solanum pennellii HOM05D002293 ORTHO05D006850 5.4e-21 104.4 89 61.8
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.4e-21 104.4 92 58.7
A08p33930 Brassica napus HOM05D002293 ORTHO05D006850 7.1e-21 104.0 89 61.8
C08p13740 Brassica napus HOM05D002293 ORTHO05D006850 7.1e-21 104.0 101 57.4
BraA08t35307Z Brassica rapa HOM05D002293 ORTHO05D006850 7.1e-21 104.0 89 61.8
Lsat_1_v5_gn_5_39360 Lactuca sativa HOM05D002293 ORTHO05D006850 7.1e-21 104.0 77 68.8
Cpa.g.sc72.2 Carica papaya HOM05D002293 ORTHO05D006850 9.2e-21 103.6 87 62.1
Thhalv10008651m.g Eutrema salsugineum HOM05D002293 ORTHO05D006850 9.2e-21 103.6 92 59.8
Gohir.A10G084000 Gossypium hirsutum HOM05D002293 ORTHO05D006850 9.2e-21 103.6 92 58.7
TWI79G1666 Tripterygium wilfordii HOM05D002293 ORTHO05D006850 9.2e-21 103.6 91 60.4
AT1G10500 Arabidopsis thaliana HOM05D002293 ORTHO05D006850 1.6e-20 102.8 92 59.8
BcaC07g38568 Brassica carinata HOM05D002293 ORTHO05D006850 1.6e-20 102.8 101 56.4
BcaC07g38606 Brassica carinata HOM05D002293 ORTHO05D006850 1.6e-20 102.8 89 60.7
BolC8t49009H Brassica oleracea HOM05D002293 ORTHO05D006850 1.6e-20 102.8 101 56.4
COL.COLO4_10996 Corchorus olitorius HOM05D002293 ORTHO05D006850 1.6e-20 102.8 91 58.2
Glyma.05G184700 Glycine max HOM05D002293 ORTHO05D006850 1.6e-20 102.8 94 56.4
Potri.005G085400 Populus trichocarpa HOM05D002293 ORTHO05D006850 1.6e-20 102.8 90 58.9
ECA246G2776 Erigeron canadensis HOM05D002293 ORTHO05D006850 2.1e-20 102.4 86 60.5
Medtr8g092030 Medicago truncatula HOM05D002293 ORTHO05D006850 2.1e-20 102.4 79 64.6
Zm00001eb377130 Zea mays HOM05D002293 ORTHO05D006850 2.1e-20 102.4 91 58.2
MSTRG.15755 Avicennia marina HOM05D002293 ORTHO05D006850 2.7e-20 102.1 92 57.6
BolC5t29625H Brassica oleracea HOM05D002293 ORTHO05D006850 2.7e-20 102.1 91 59.3
CARHR010640 Cardamine hirsuta HOM05D002293 ORTHO05D006850 2.7e-20 102.1 92 58.7
Ca_17690_v3 Cicer arietinum L. HOM05D002293 ORTHO05D006850 2.7e-20 102.1 94 57.4
TPR.G2175 Trifolium pratense HOM05D002293 ORTHO05D006850 2.7e-20 102.1 74 68.9
Gorai.011G114300 Gossypium raimondii HOM05D002293 ORTHO05D006850 3.5e-20 101.7 92 57.6
Cc07_g16420 Coffea canephora HOM05D002293 ORTHO05D006850 4.6e-20 101.3 75 65.3
DCAR_011459 Daucus carota HOM05D002293 ORTHO05D006850 4.6e-20 101.3 77 63.6
Migut.H02444 Erythranthe guttata HOM05D002293 ORTHO05D006850 4.6e-20 101.3 94 56.4
Manes.13G076424 Manihot esculenta HOM05D002293 ORTHO05D006850 4.6e-20 101.3 91 58.2
Sabra05G0070300 Salix brachista HOM05D002293 ORTHO05D006850 4.6e-20 101.3 90 57.8
Sc03g0004470 Simmondsia chinensis HOM05D002293 ORTHO05D006850 4.6e-20 101.3 90 58.9
TAR628G0759 Trochodendron aralioides HOM05D002293 ORTHO05D006850 4.6e-20 101.3 72 68.1
A06p07270 Brassica napus HOM05D002293 ORTHO05D006850 6.0e-20 100.9 89 59.6
C05p08790 Brassica napus HOM05D002293 ORTHO05D006850 6.0e-20 100.9 89 59.6
BraA06t23933Z Brassica rapa HOM05D002293 ORTHO05D006850 6.0e-20 100.9 89 59.6
CSS0045484 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D006850 6.0e-20 100.9 91 58.2
Sp1g09130 Schrenkiella parvula HOM05D002293 ORTHO05D006850 6.0e-20 100.9 101 54.5
CSS0018890 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D006850 7.8e-20 100.5 91 58.2
Ciclev10026609m.g Citrus clementina HOM05D002293 ORTHO05D006850 7.8e-20 100.5 91 57.1
Lj4g0027809 Lotus japonicus HOM05D002293 ORTHO05D006850 7.8e-20 100.5 94 55.3
Aa31LG1G4450 Aethionema arabicum HOM05D002293 ORTHO05D006850 1.3e-19 99.8 85 61.2
AL1G21300 Arabidopsis lyrata HOM05D002293 ORTHO05D006850 1.3e-19 99.8 92 58.7
Gohir.D10G104800 Gossypium hirsutum HOM05D002293 ORTHO05D006850 1.3e-19 99.8 92 56.5
CARHR115310 Cardamine hirsuta HOM05D002293 ORTHO05D006850 1.7e-19 99.4 75 64.0
THA.LOC104823665 Tarenaya hassleriana HOM05D002293 ORTHO05D006850 1.7e-19 99.4 88 59.1
BcaC05g24873 Brassica carinata HOM05D002293 ORTHO05D006850 2.3e-19 99.0 74 64.9
BolC5t29624H Brassica oleracea HOM05D002293 ORTHO05D006850 2.3e-19 99.0 74 64.9
Psat7g050640 Pisum sativum HOM05D002293 ORTHO05D006850 2.3e-19 99.0 79 60.8
Zm00001eb270460 Zea mays HOM05D002293 ORTHO05D006850 2.3e-19 99.0 88 58.0
Atru.chr4.430 Acer truncatum HOM05D002293 ORTHO05D006850 3.0e-19 98.6 74 64.9
Carub.0001s0993 Capsella rubella HOM05D002293 ORTHO05D006850 3.0e-19 98.6 90 56.7
Hma1.2p1_0375F.1_g138800 Hydrangea macrophylla HOM05D002293 ORTHO05D006850 3.0e-19 98.6 74 64.9
arahy.Tifrunner.gnm1.ann1.KS5C3R Arachis hypogaea HOM05D002293 ORTHO05D006850 3.9e-19 98.2 70 70.0
BcaC05g24931 Brassica carinata HOM05D002293 ORTHO05D006850 3.9e-19 98.2 89 57.3
THA.LOC104816734 Tarenaya hassleriana HOM05D002293 ORTHO05D006850 3.9e-19 98.2 92 56.5
Hund03525 Selenicereus undatus HOM05D002293 ORTHO05D006850 5.1e-19 97.8 84 58.3
CiPaw.03G133300 Carya illinoinensis HOM05D002293 ORTHO05D006850 6.6e-19 97.4 94 56.4
Lalb_Chr12g0203491 Lupinus albus HOM05D002293 ORTHO05D006850 6.6e-19 97.4 94 54.3
Potri.007G079600 Populus trichocarpa HOM05D002293 ORTHO05D006850 6.6e-19 97.4 90 55.6
Ah.03g141650 Amaranthus hybridus HOM05D002293 ORTHO05D006850 8.7e-19 97.1 89 56.2
HanXRQChr12g0379751 Helianthus annuus HOM05D002293 ORTHO05D006850 8.7e-19 97.1 79 63.3
C05p52480 Brassica napus HOM05D002293 ORTHO05D006850 1.1e-18 96.7 66 69.7
EL10Ac6g14773 Beta vulgaris HOM05D002293 ORTHO05D006850 1.5e-18 96.3 91 52.7
unitig_899.g14611 Utricularia gibba HOM05D002293 ORTHO05D006850 1.5e-18 96.3 92 56.5
arahy.Tifrunner.gnm1.ann1.G7CS59 Arachis hypogaea HOM05D002293 ORTHO05D006850 1.9e-18 95.9 90 57.8
SGA_v2.0_scaffold47G17699 Striga asiatica HOM05D002293 ORTHO05D006850 1.9e-18 95.9 92 55.4
GSVIVG01022247001 Vitis vinifera HOM05D002293 ORTHO05D006850 1.9e-18 95.9 73 64.4
BcaC06g34278 Brassica carinata HOM05D002294 ORTHO05D002367 2.5e-18 95.5 66 68.2
BolC7t43630H Brassica oleracea HOM05D002293 ORTHO05D006850 3.3e-18 95.1 66 68.2
AUR62003296 Chenopodium quinoa HOM05D002293 ORTHO05D006850 3.3e-18 95.1 90 55.6
AUR62027166 Chenopodium quinoa HOM05D002293 ORTHO05D006850 3.3e-18 95.1 91 54.9
CARHR053060 Cardamine hirsuta HOM05D002293 ORTHO05D006850 5.6e-18 94.4 85 56.5
CDE06G1065 Ceratophyllum demersum HOM05D002293 ORTHO05D006850 1.6e-17 92.8 73 60.3
PGR004G0821 Punica granatum HOM05D002293 ORTHO05D006850 4.8e-17 91.3 81 58.0
SEGI_15698 Sequoiadendron giganteum HOM05D002293 ORTHO05D006850 4.8e-17 91.3 91 52.7
RcHm_v2.0_Chr3g0477511 Rosa chinensis HOM05D002293 ORTHO05D006850 6.9e-16 87.4 53 81.1
Pp3c2_12660 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.7e-14 82.8 89 48.3
HPP92_023991 Vanilla planifolia HOM05D002293 ORTHO05D006850 1.7e-14 82.8 65 61.5
AagrBONN_evm.TU.Sc2ySwM_362.938 Anthoceros agrestis HOM05D000606 ORTHO05D001265 4.9e-14 81.3 91 46.2
Pp3c1_29460 Physcomitrium patens HOM05D002293 ORTHO05D006850 4.9e-14 81.3 83 48.2
Pp3c14_20400 Physcomitrium patens HOM05D002293 ORTHO05D006850 3.5e-12 75.1 76 47.4
SMO144G0175 Selaginella moellendorffii HOM05D002293 ORTHO05D006850 3.5e-12 75.1 88 43.2
BcaB03g15697 Brassica carinata HOM05D002293 ORTHO05D006850 1.9e-10 69.3 43 74.4
CBR_g72684 Chara braunii HOM05D002293 ORTHO05D006850 1.9e-10 69.3 95 38.9
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 5.6e-10 67.8 42 73.8
C06p38600 Brassica napus HOM05D001833 ORTHO05D001776 2.8e-09 65.5 42 73.8
Mapoly0063s0067 Marchantia polymorpha HOM05D002293 ORTHO05D006850 5.3e-08 61.2 91 39.6
BolC2t06175H Brassica oleracea HOM05D002293 ORTHO05D006850 3.4e-07 58.5 42 64.3
Sabra07G0066800 Salix brachista HOM05D002293 ORTHO05D006850 1.3e-06 56.6 45 57.8


User provided reference genes

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