Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 4.6e-138 494.6 255 100.0
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 7.2e-115 417.5 255 85.9
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.7e-114 415.6 255 85.5
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 7.9e-114 414.1 255 85.5
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 1.5e-101 373.2 258 74.4
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 7.2e-91 337.8 254 69.3
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 7.2e-91 337.8 254 69.3
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 3.0e-89 332.4 254 67.3
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 4.0e-89 332.0 257 68.1
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 2.4e-86 322.8 258 65.1
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 4.1e-86 322.0 258 65.5
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.2e-85 320.5 257 65.4
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 1.2e-85 320.5 255 66.3
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 1.6e-85 320.1 257 66.5
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 4.5e-85 318.5 254 66.1
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 7.7e-85 317.8 277 62.1
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.3e-84 317.0 254 65.7
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 2.2e-84 316.2 252 65.5
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 2.2e-84 316.2 256 64.1
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 2.9e-84 315.8 251 64.9
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 2.5e-83 312.8 249 66.7
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 2.5e-83 312.8 254 66.9
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 1.2e-82 310.5 252 63.5
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 1.2e-82 310.5 256 62.1
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 1.6e-82 310.1 258 64.0
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 4.7e-82 308.5 254 63.0
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 8.0e-82 307.8 258 64.7
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 8.0e-82 307.8 252 64.7
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 1.8e-81 306.6 256 64.5
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 2.3e-81 306.2 257 61.9
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 3.0e-81 305.8 258 62.4
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 4.0e-81 305.4 258 62.4
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.0e-81 305.4 259 63.3
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 4.0e-81 305.4 255 62.0
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 5.2e-81 305.1 254 64.2
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 5.2e-81 305.1 255 62.4
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 1.5e-80 303.5 262 62.2
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 1.5e-80 303.5 215 75.3
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 1.5e-80 303.5 257 61.1
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 2.0e-80 303.1 255 61.6
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 2.6e-80 302.8 256 63.7
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 3.4e-80 302.4 253 63.2
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 3.4e-80 302.4 252 61.5
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 5.7e-80 301.6 252 63.1
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 7.5e-80 301.2 265 60.0
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 7.5e-80 301.2 252 61.9
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 9.8e-80 300.8 254 63.8
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 2.2e-79 299.7 254 61.0
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 2.8e-79 299.3 257 64.2
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 4.8e-79 298.5 260 61.9
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 6.3e-79 298.1 255 67.8
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 6.3e-79 298.1 249 61.0
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.1e-78 297.4 251 62.2
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 1.1e-78 297.4 259 61.0
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 7.0e-78 294.7 254 62.6
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 2.0e-77 293.1 251 60.2
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 4.5e-77 292.0 256 60.2
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 5.9e-77 291.6 260 61.5
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 5.9e-77 291.6 253 61.3
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 1.0e-76 290.8 254 60.6
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.0e-76 290.8 259 61.0
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.7e-76 290.0 252 60.7
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.7e-76 290.0 259 59.8
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 2.3e-76 289.7 283 57.6
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.3e-76 289.7 259 61.0
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 3.8e-76 288.9 255 59.6
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 5.0e-76 288.5 253 60.5
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 5.0e-76 288.5 254 59.8
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 5.0e-76 288.5 254 60.6
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 1.5e-75 287.0 250 59.2
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 2.5e-75 286.2 264 57.2
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 7.2e-75 284.6 255 59.2
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.6e-74 283.5 276 56.5
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 1.6e-74 283.5 249 57.4
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 2.1e-74 283.1 264 56.8
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 1.0e-73 280.8 255 58.8
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 1.8e-73 280.0 265 54.7
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 3.0e-73 279.3 257 58.4
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 1.2e-72 277.3 254 59.1
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 3.4e-72 275.8 254 57.9
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 5.7e-72 275.0 264 56.1
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 1.3e-71 273.9 278 55.0
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 7.0e-70 268.1 205 66.3
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 9.2e-70 267.7 266 54.9
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 1.2e-69 267.3 265 57.7
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.1e-67 260.8 244 56.6
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 1.1e-67 260.8 259 55.2
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 3.4e-64 249.2 251 53.4
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 8.3e-63 244.6 250 50.4
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 1.1e-62 244.2 258 50.4
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 1.4e-62 243.8 254 52.0
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.2e-61 240.7 260 52.3
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.6e-61 240.4 299 47.5
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 5.8e-56 221.9 260 48.5
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.6e-53 212.2 195 61.0
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 1.1e-51 207.6 248 50.0
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 6.0e-45 185.3 155 63.9
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 4.3e-43 179.1 159 55.3
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 2.8e-42 176.4 243 43.2
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.9e-38 163.7 171 51.5
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 8.4e-31 138.3 142 55.6
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 1.4e-30 137.5 131 60.3
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 3.9e-28 129.4 228 37.7
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 3.9e-28 129.4 249 37.3
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 6.9e-17 92.0 63 65.1
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 1.2e-16 91.3 92 45.7
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.1e-13 80.5 229 30.1
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.7e-13 80.1 229 30.6
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 5.0e-07 59.3 106 37.7
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 8.4e-07 58.5 109 36.7


User provided reference genes

Program Settings