Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158311 Rosa chinensis HOM05D007498 ORTHO05D009384 5.1e-213 744.2 393 100.0
FAN05G5059 Fragaria x ananassa HOM05D007498 ORTHO05D009384 1.4e-186 656.4 393 88.0
FvH4_6g42420 Fragaria vesca HOM05D007498 ORTHO05D009384 9.2e-186 653.7 393 88.5
Prupe.3G211200 Prunus persica HOM05D007498 ORTHO05D009384 5.8e-156 554.7 391 75.2
MD17G1103400 Malus domestica HOM05D007498 ORTHO05D009384 1.0e-152 543.9 392 73.7
CiPaw.03G155900 Carya illinoinensis HOM05D007498 ORTHO05D009384 5.3e-141 505.0 393 67.4
Dinv08726 Davidia involucrata HOM05D007498 ORTHO05D009384 1.3e-136 490.3 396 64.6
CANSAT64G1398 Cannabis sativa HOM05D007498 ORTHO05D009384 2.0e-132 476.5 394 65.2
FAN09G2551 Fragaria x ananassa HOM05D007498 ORTHO05D009384 1.3e-131 473.8 315 83.5
QL08p030918 Quercus lobata HOM05D007498 ORTHO05D009384 2.2e-131 473.0 388 66.0
TWI18G0826 Tripterygium wilfordii HOM05D007498 ORTHO05D009384 3.8e-131 472.2 394 62.9
Manes.12G070200 Manihot esculenta HOM05D007498 ORTHO05D009384 8.4e-131 471.1 401 61.6
Thecc.01G181300 Theobroma cacao HOM05D007498 ORTHO05D009384 5.5e-130 468.4 394 61.7
Ciclev10015493m.g Citrus clementina HOM05D007498 ORTHO05D009384 2.7e-129 466.1 397 64.2
MD09G1113300 Malus domestica HOM05D007498 ORTHO05D009384 6.0e-129 464.9 326 74.5
CSS0038240 Camellia sinensis var. sinensis HOM05D007498 ORTHO05D009384 6.7e-128 461.5 396 62.6
GSVIVG01030496001 Vitis vinifera HOM05D007498 ORTHO05D009384 8.7e-128 461.1 393 62.3
COL.COLO4_21864 Corchorus olitorius HOM05D007498 ORTHO05D009384 1.1e-127 460.7 396 60.9
Gorai.001G216600 Gossypium raimondii HOM05D007498 ORTHO05D009384 1.5e-127 460.3 397 61.0
Gohir.A07G187000 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.9e-127 459.9 388 61.6
TAR629G3061 Trochodendron aralioides HOM05D007498 ORTHO05D009384 3.3e-127 459.1 395 63.0
Hma1.2p1_0445F.1_g154420 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 2.8e-126 456.1 369 63.1
Hma1.2p1_2381F.1_g320980 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 4.8e-126 455.3 395 60.3
Actinidia13735 Actinidia chinensis HOM05D007498 ORTHO05D009384 5.8e-124 448.4 369 63.4
Eucgr.A01096 Eucalyptus grandis HOM05D007498 ORTHO05D009384 6.5e-123 444.9 399 61.4
Sabra14G0119400 Salix brachista HOM05D007498 ORTHO05D009384 2.7e-121 439.5 416 57.9
Actinidia09741 Actinidia chinensis HOM05D007498 ORTHO05D009384 4.3e-119 432.2 395 60.3
Rhsim06G0166900 Rhododendron simsii HOM05D007498 ORTHO05D009384 4.3e-119 432.2 447 56.2
Rhsim09G0054300 Rhododendron simsii HOM05D007498 ORTHO05D009384 4.3e-119 432.2 447 55.9
AT2G05755 Arabidopsis thaliana HOM05D007498 ORTHO05D009384 1.8e-117 426.8 394 57.6
Cc05_g03070 Coffea canephora HOM05D007498 ORTHO05D009384 2.4e-117 426.4 404 56.4
AL3G43270 Arabidopsis lyrata HOM05D007498 ORTHO05D009384 3.4e-116 422.5 394 57.4
Lj6g0022389 Lotus japonicus HOM05D007498 ORTHO05D009384 3.4e-116 422.5 397 58.7
TPR.G34497 Trifolium pratense HOM05D007498 ORTHO05D009384 4.5e-116 422.2 404 56.4
Carub.0003s2696 Capsella rubella HOM05D007498 ORTHO05D009384 1.7e-115 420.2 396 56.1
Sc21g0001170 Simmondsia chinensis HOM05D007498 ORTHO05D009384 2.9e-115 419.5 390 58.2
Nitab4.5_0006063g0010 Nicotiana tabacum HOM05D007498 ORTHO05D009384 3.8e-115 419.1 382 58.9
Sp3g24210 Schrenkiella parvula HOM05D007498 ORTHO05D009384 3.8e-115 419.1 395 57.5
THA.LOC104815344 Tarenaya hassleriana HOM05D007498 ORTHO05D009384 6.5e-115 418.3 395 57.2
Phvul.006G012811 Phaseolus vulgaris HOM05D007498 ORTHO05D009384 8.5e-115 417.9 393 57.5
Sed0020195 Sechium edule HOM05D007498 ORTHO05D009384 3.2e-114 416.0 393 58.5
Gorai.001G095600 Gossypium raimondii HOM05D007498 ORTHO05D009384 5.5e-114 415.2 396 58.8
Lsat_1_v5_gn_5_123880 Lactuca sativa HOM05D007498 ORTHO05D009384 5.5e-114 415.2 381 55.4
Medtr3g080260 Medicago truncatula HOM05D007498 ORTHO05D009384 5.5e-114 415.2 398 56.0
vmacro12166 Vaccinium macrocarpon HOM05D007498 ORTHO05D009384 1.8e-112 410.2 462 52.2
CARHR103340 Cardamine hirsuta HOM05D007498 ORTHO05D009384 3.0e-112 409.5 396 56.8
A03p44690 Brassica napus HOM05D007498 ORTHO05D009384 5.1e-112 408.7 386 57.0
Nitab4.5_0000019g0370 Nicotiana tabacum HOM05D007498 ORTHO05D009384 5.1e-112 408.7 371 59.3
Aa31LG8G11370 Aethionema arabicum HOM05D007498 ORTHO05D009384 6.7e-112 408.3 394 56.9
CsaV3_6G037690 Cucumis sativus L. HOM05D007498 ORTHO05D009384 1.1e-111 407.5 387 57.6
C03p55520 Brassica napus HOM05D007498 ORTHO05D009384 1.5e-111 407.1 386 57.3
Sopen05g026100 Solanum pennellii HOM05D007498 ORTHO05D009384 1.5e-111 407.1 355 59.4
BcaB08g34508 Brassica carinata HOM05D007498 ORTHO05D009384 5.7e-111 405.2 386 57.5
Solyc05g042050.4 Solanum lycopersicum HOM05D007498 ORTHO05D009384 7.4e-111 404.8 355 59.4
BcaC01g03153 Brassica carinata HOM05D007498 ORTHO05D009384 1.3e-110 404.1 386 56.7
PSO541G2474 Papaver somniferum HOM05D007498 ORTHO05D009384 4.8e-110 402.1 363 57.3
Nn1g03383 Nelumbo nucifera HOM05D007498 ORTHO05D009384 1.1e-109 401.0 395 55.4
Gohir.D07G193500 Gossypium hirsutum HOM05D007498 ORTHO05D009384 5.3e-109 398.7 312 64.1
BolC3t17828H Brassica oleracea HOM05D000228 ORTHO05D001122 9.1e-109 397.9 399 55.4
HanXRQChr12g0373631 Helianthus annuus HOM05D007498 ORTHO05D009384 9.1e-109 397.9 381 54.6
PGR042G1731 Punica granatum HOM05D007498 ORTHO05D009384 9.1e-109 397.9 393 56.0
BraA03t13603Z Brassica rapa HOM05D007498 ORTHO05D009384 1.5e-108 397.1 399 54.9
MBI19_g41387_MAGBIO Magnolia biondii HOM05D007498 ORTHO05D009384 3.4e-108 396.0 382 53.9
Lj1A780G53 Lonicera japonica HOM05D007498 ORTHO05D009384 2.9e-107 392.9 391 53.5
Lsat_1_v5_gn_7_95281 Lactuca sativa HOM05D007498 ORTHO05D009384 7.2e-106 388.3 373 55.0
Peaxi162Scf00100g01524 Petunia axillaris HOM05D007498 ORTHO05D009384 7.2e-106 388.3 335 61.2
Duzib138G1101 Durio zibethinus HOM05D007498 ORTHO05D009384 9.4e-106 387.9 395 55.9
Aqoxy1G04193 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 2.7e-105 386.3 367 56.4
PSO675G1300 Papaver somniferum HOM05D007498 ORTHO05D009384 3.6e-105 386.0 429 51.3
FAN14G0249 Fragaria x ananassa HOM05D007498 ORTHO05D001133 1.7e-99 367.1 399 60.2
MELO3C014431.2 Cucumis melo HOM05D007498 ORTHO05D009384 2.1e-97 360.1 425 49.9
ClCG07G002420 Citrullus lanatus HOM05D007498 ORTHO05D009384 7.7e-92 341.7 393 51.9
ATR0059G023 Amborella trichopoda HOM05D007498 ORTHO05D009384 2.9e-91 339.7 393 48.9
Thhalv10002583m.g Eutrema salsugineum HOM05D007498 ORTHO05D009384 2.0e-87 327.0 405 49.9
Gohir.A07G083200 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.1e-82 311.2 274 61.3
Gohir.D07G089300 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.6e-81 307.4 275 60.7
ECA234G3795 Erigeron canadensis HOM05D007498 ORTHO05D009384 2.9e-75 286.6 289 54.0
Psat5g106880 Pisum sativum HOM05D007498 ORTHO05D009384 1.6e-73 280.8 287 53.7
SEGI_23048 Sequoiadendron giganteum HOM05D007498 ORTHO05D009384 4.9e-70 269.2 369 41.5
Ca_16281_v3 Cicer arietinum L. HOM05D007498 ORTHO05D009384 1.7e-67 260.8 366 43.4
Potri.014G157700 Populus trichocarpa HOM05D007498 ORTHO05D009384 6.6e-67 258.8 237 59.5
Aqoxy1G02942 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 3.0e-64 250.0 253 53.8
MD09G1113200 Malus domestica HOM05D007498 ORTHO05D009384 2.2e-62 243.8 233 59.7
CDE07G0657 Ceratophyllum demersum HOM05D000323 ORTHO05D009384 1.9e-58 230.7 399 39.6
Cpa.g.sc132.15 Carica papaya HOM05D007498 ORTHO05D009384 1.1e-48 198.4 141 71.6
DCAR_019260 Daucus carota HOM05D007498 ORTHO05D001133 1.5e-47 194.5 168 58.9
AagrBONN_evm.TU.Sc2ySwM_344.4295 Anthoceros agrestis HOM05D007498 ORTHO05D009384 1.0e-43 181.8 325 33.8
Mapoly0005s0243 Marchantia polymorpha HOM05D007498 ORTHO05D009384 7.6e-39 165.6 390 31.3
Haze_12773 Corylus avellana HOM05D007498 ORTHO05D009384 1.6e-36 157.9 205 47.8
Pp3c17_21590 Physcomitrium patens HOM05D007498 ORTHO05D009384 2.1e-33 147.5 291 32.3
Atru.chr6.3249 Acer truncatum HOM05D007498 ORTHO05D009384 3.2e-29 133.7 93 71.0
SMO146G0054 Selaginella moellendorffii HOM05D007498 ORTHO05D009384 1.1e-24 118.6 290 28.6
VMungo0540G0169 Vigna mungo HOM05D007498 ORTHO05D009384 8.4e-22 109.0 108 54.6
Atru.chr6.3248 Acer truncatum HOM05D007498 ORTHO05D009384 1.9e-21 107.8 70 80.0
Aqoxy1G02941 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 4.3e-18 96.7 98 53.1
VMungo0540G1885 Vigna mungo HOM05D007498 ORTHO05D009384 1.9e-13 81.3 64 65.6


User provided reference genes

Program Settings