Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.7e-163 578.2 294 100.0
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 7.4e-156 553.9 291 96.2
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.1e-155 552.4 291 95.9
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-154 549.7 291 95.2
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-152 543.1 305 91.5
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.0e-144 516.9 296 88.9
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.1e-143 513.5 292 88.4
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.8e-141 506.1 291 87.6
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.2e-136 489.2 299 83.6
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 5.5e-135 484.6 299 82.9
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 6.7e-133 477.6 299 81.6
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 9.7e-132 473.8 301 79.7
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.7e-131 473.0 296 81.8
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.2e-131 472.6 298 81.2
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.2e-131 472.6 298 81.9
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.8e-131 472.2 298 82.2
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 8.2e-131 470.7 303 80.5
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 2.0e-129 466.1 299 81.3
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 7.7e-129 464.2 298 80.2
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.7e-128 463.0 294 79.6
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.5e-127 459.1 299 79.6
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 9.4e-127 457.2 299 80.3
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.2e-126 456.8 299 79.3
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.6e-126 456.4 297 78.5
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 2.1e-126 456.1 299 78.9
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.7e-126 455.7 299 78.9
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 3.6e-126 455.3 299 79.3
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 4.7e-126 454.9 304 79.6
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.8e-125 453.0 292 80.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.0e-125 451.8 299 79.6
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 6.7e-125 451.1 309 76.7
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.7e-123 445.3 293 78.5
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.1e-122 443.7 303 74.9
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 7.0e-122 441.0 295 79.3
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.0e-121 439.5 291 78.0
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 3.5e-121 438.7 299 76.9
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.9e-121 438.0 292 77.7
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.3e-120 436.8 291 79.0
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.7e-120 436.4 296 78.0
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 6.5e-120 434.5 299 76.9
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 8.5e-120 434.1 298 76.8
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-119 433.7 297 75.8
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.5e-119 433.3 298 76.8
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.5e-119 433.3 296 76.7
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 3.2e-119 432.2 290 76.9
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.2e-119 432.2 292 77.4
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 4.2e-119 431.8 300 76.7
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 4.2e-119 431.8 288 77.1
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 9.4e-119 430.6 298 76.8
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.1e-118 429.5 295 74.6
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 2.7e-118 429.1 267 81.6
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 3.6e-118 428.7 292 74.7
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 3.6e-118 428.7 293 77.1
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 6.1e-118 427.9 297 76.1
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.4e-117 426.8 295 75.9
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.3e-117 426.0 290 76.2
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 2.3e-117 426.0 271 80.4
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 5.2e-117 424.9 296 75.0
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 5.2e-117 424.9 271 80.4
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 8.8e-117 424.1 292 74.0
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.0e-116 422.9 291 73.9
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 3.4e-116 422.2 296 75.7
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 4.4e-116 421.8 291 75.9
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.7e-116 421.4 290 75.2
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 5.7e-116 421.4 291 74.9
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 7.5e-116 421.0 295 76.6
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 9.8e-116 420.6 291 73.5
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 9.8e-116 420.6 296 73.0
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.3e-115 420.2 278 78.8
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-115 419.9 296 75.3
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 1.7e-115 419.9 319 72.1
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.7e-115 419.9 295 74.9
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.8e-115 419.1 294 76.9
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.8e-115 419.1 290 74.8
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.8e-115 419.1 290 75.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 3.7e-115 418.7 291 76.3
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 3.7e-115 418.7 267 80.5
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 4.8e-115 418.3 286 77.3
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 6.3e-115 417.9 298 74.5
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 8.3e-115 417.5 298 74.5
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.4e-114 416.8 290 75.2
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 5.4e-114 414.8 295 74.2
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 7.0e-114 414.5 298 75.2
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 7.0e-114 414.5 317 71.3
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 9.1e-114 414.1 256 83.6
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.6e-113 413.3 296 73.6
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.0e-112 410.6 282 76.6
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.9e-112 409.1 282 75.9
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 5.0e-112 408.3 283 77.7
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-111 407.1 298 74.8
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.5e-111 406.0 298 71.8
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 3.2e-111 405.6 347 66.6
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.7e-110 402.5 252 82.9
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 5.2e-109 398.3 245 84.9
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 6.8e-109 397.9 271 75.3
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-108 397.1 271 74.9
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.6e-108 396.0 290 74.1
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 4.4e-108 395.2 244 83.6
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.7e-107 393.3 245 83.3
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.7e-107 393.3 268 78.0
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.7e-107 393.3 304 70.4
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 2.2e-107 392.9 245 83.3
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.2e-107 392.9 289 72.7
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 3.7e-107 392.1 298 70.5
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.1e-106 390.6 263 77.9
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 3.1e-106 389.0 254 79.5
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.3e-104 382.9 292 69.2
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.6e-104 381.3 218 88.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.9e-103 379.8 247 81.8
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.3e-103 379.0 313 67.1
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.3e-103 379.0 246 80.1
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 5.7e-100 368.2 254 76.0
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.3e-99 367.1 305 66.2
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.3e-99 367.1 253 77.5
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 9.2e-98 360.9 238 80.3
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-97 360.5 295 67.5
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.2e-94 350.5 286 66.1
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.8e-93 344.7 294 65.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 7.5e-92 341.3 279 67.4
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.8e-92 340.9 179 97.2
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 3.2e-90 335.9 224 79.9
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.7e-89 332.8 278 66.2
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.0e-88 330.9 292 63.7
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.4e-84 315.8 235 72.8
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.8e-84 315.1 209 77.0
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 9.8e-84 314.3 246 69.5
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.0e-80 304.3 179 83.8
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 3.9e-80 302.4 215 75.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.1e-79 300.8 238 67.2
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 2.8e-78 296.2 322 50.9
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 4.7e-78 295.4 255 68.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 6.8e-77 291.6 306 53.6
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 5.8e-76 288.5 301 53.2
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 7.3e-71 271.6 270 56.7
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.8e-70 269.6 179 74.9
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 3.6e-70 269.2 252 60.7
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 6.2e-70 268.5 225 63.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.2e-70 268.5 234 60.7
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 6.9e-69 265.0 261 55.9
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 7.6e-68 261.5 177 78.5
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 7.6e-68 261.5 177 71.2
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.1e-61 241.1 163 74.2
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.7e-59 233.8 201 63.2
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.7e-59 233.8 139 84.2
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 4.2e-50 202.6 239 46.0
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.5e-49 199.5 158 69.0
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.1e-46 190.3 142 69.0
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 7.1e-42 175.3 120 79.2
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.7e-39 165.6 112 76.8
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.6e-38 164.1 89 89.9
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.9e-31 140.6 82 84.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.2e-30 137.1 82 81.7
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 7.7e-28 128.6 64 96.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 7.2e-26 122.1 66 95.5
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 2.2e-19 100.5 89 62.9
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.3e-15 86.7 107 51.4
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-11 75.1 48 79.2
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.3e-11 74.7 48 75.0
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.7e-06 57.8 63 52.4
BcaNung06412 Brassica carinata HOM05D004545 ORTHO05D095766 2.8e-06 57.0 118 34.7


User provided reference genes

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