Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.6e-61 239.2 119 100.0
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.4e-20 103.2 89 62.9
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.2e-19 100.1 89 60.7
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 2.0e-19 99.4 89 61.8
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-19 99.4 89 61.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-19 99.4 89 61.8
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-19 99.4 89 61.8
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 4.5e-19 98.2 89 59.6
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 4.5e-19 98.2 89 59.6
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 3.2e-17 92.0 89 56.2
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 7.2e-17 90.9 89 56.2
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.2e-16 90.1 88 55.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.2e-16 90.1 88 56.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.1e-16 89.4 112 49.1
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 2.1e-16 89.4 88 56.8
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 2.7e-16 89.0 86 57.0
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 3.6e-16 88.6 88 55.7
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.6e-16 88.6 86 57.0
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 3.6e-16 88.6 85 57.6
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.6e-16 88.6 112 49.1
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.6e-16 88.6 112 49.1
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.6e-16 88.2 110 49.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.6e-16 88.2 110 49.1
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 4.6e-16 88.2 88 55.7
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 4.6e-16 88.2 113 50.4
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 6.1e-16 87.8 88 55.7
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 6.1e-16 87.8 85 57.6
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 7.9e-16 87.4 99 51.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 7.9e-16 87.4 99 51.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 7.9e-16 87.4 99 51.5
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 7.9e-16 87.4 99 51.5
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 7.9e-16 87.4 99 51.5
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 7.9e-16 87.4 88 55.7
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 7.9e-16 87.4 88 56.8
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.0e-15 87.0 87 54.0
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.0e-15 87.0 83 59.0
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.0e-15 87.0 88 53.4
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.0e-15 87.0 88 53.4
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.0e-15 87.0 88 53.4
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.4e-15 86.7 90 52.2
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.4e-15 86.7 109 48.6
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.8e-15 86.3 88 54.5
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.8e-15 86.3 88 54.5
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.8e-15 86.3 85 55.3
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.8e-15 86.3 85 56.5
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.8e-15 86.3 86 55.8
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.8e-15 86.3 88 55.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.3e-15 85.9 112 48.2
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 2.3e-15 85.9 88 54.5
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.3e-15 85.9 110 48.2
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.3e-15 85.9 112 47.3
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.0e-15 85.5 123 44.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.0e-15 85.5 88 54.5
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 3.0e-15 85.5 88 54.5
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 3.0e-15 85.5 88 54.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 3.0e-15 85.5 89 53.9
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.0e-15 85.5 91 53.8
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.0e-15 85.5 87 54.0
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.9e-15 85.1 88 54.5
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 3.9e-15 85.1 88 54.5
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.9e-15 85.1 85 55.3
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 5.1e-15 84.7 88 54.5
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 5.1e-15 84.7 88 53.4
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 5.1e-15 84.7 88 54.5
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 5.1e-15 84.7 88 54.5
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 5.1e-15 84.7 88 54.5
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 5.1e-15 84.7 88 54.5
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 5.1e-15 84.7 99 51.5
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 5.1e-15 84.7 85 55.3
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 5.1e-15 84.7 88 52.3
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.1e-15 84.7 87 55.2
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.7e-15 84.3 88 53.4
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.7e-15 84.3 112 47.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 6.7e-15 84.3 88 54.5
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 6.7e-15 84.3 88 54.5
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 6.7e-15 84.3 99 50.5
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 6.7e-15 84.3 88 53.4
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 6.7e-15 84.3 88 54.5
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 6.7e-15 84.3 88 54.5
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 6.7e-15 84.3 88 53.4
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 8.8e-15 84.0 83 55.4
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 8.8e-15 84.0 112 47.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 8.8e-15 84.0 112 47.3
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 8.8e-15 84.0 112 47.3
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 8.8e-15 84.0 88 53.4
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 8.8e-15 84.0 124 46.0
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.8e-15 84.0 85 54.1
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-14 83.6 83 56.6
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.1e-14 83.6 88 52.3
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.1e-14 83.6 110 47.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.5e-14 83.2 112 46.4
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.5e-14 83.2 83 56.6
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.5e-14 83.2 89 52.8
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.5e-14 83.2 87 54.0
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.5e-14 83.2 88 53.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 1.5e-14 83.2 83 55.4
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 2.0e-14 82.8 88 53.4
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 2.0e-14 82.8 88 53.4
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.0e-14 82.8 88 54.5
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 2.0e-14 82.8 85 54.1
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.5e-14 82.4 87 52.9
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.5e-14 82.4 88 52.3
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.5e-14 82.4 112 46.4
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.5e-14 82.4 85 55.3
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 2.5e-14 82.4 87 52.9
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 3.3e-14 82.0 87 56.3
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 4.3e-14 81.6 88 52.3
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.3e-14 81.6 87 52.9
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 4.3e-14 81.6 112 44.6
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 4.3e-14 81.6 91 52.7
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.4e-14 80.9 87 51.7
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.4e-14 80.9 82 56.1
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 7.4e-14 80.9 111 45.0
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.7e-14 80.5 89 51.7
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 9.7e-14 80.5 91 51.6
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.3e-13 80.1 84 52.4
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 2.2e-13 79.3 112 43.8
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.8e-13 79.0 83 54.2
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 3.7e-13 78.6 83 49.4
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 3.7e-13 78.6 57 66.7
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 3.7e-13 78.6 88 52.3
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 6.3e-13 77.8 98 46.9
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.1e-12 77.0 83 51.8
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.1e-12 77.0 90 51.1
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.1e-12 77.0 83 51.8
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 2.4e-12 75.9 87 50.6
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 6.9e-12 74.3 82 51.2
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.6e-11 72.4 136 39.0
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.6e-11 72.4 78 53.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 7.7e-11 70.9 87 42.5
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.0e-10 70.5 83 51.8
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 1.4e-09 66.6 97 41.2
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.2e-09 65.5 85 49.4
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.2e-09 65.1 80 43.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.4e-09 63.9 87 41.4
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 9.4e-09 63.9 145 35.9
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 3.6e-08 62.0 89 37.1
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 6.1e-08 61.2 65 47.7
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.9e-07 58.5 89 36.0
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 5.1e-07 58.2 89 38.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 5.1e-07 58.2 65 43.1
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 8.8e-07 57.4 44 68.2


User provided reference genes

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