Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 0.0e+00 1359.4 720 100.0
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 0.0e+00 1178.7 719 88.2
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 0.0e+00 1176.8 719 87.9
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 0.0e+00 1169.5 726 86.4
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 0.0e+00 1159.4 734 85.1
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 0.0e+00 1156.0 736 84.8
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 5.3e-272 941.0 780 67.4
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.9e-254 882.1 752 66.0
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 3.6e-236 822.0 751 63.4
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 1.5e-231 806.6 720 59.6
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.0e-230 801.6 723 59.8
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 6.5e-230 801.2 722 60.4
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 8.5e-230 800.8 719 60.6
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.4e-224 783.5 725 59.9
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 5.3e-224 781.6 724 60.4
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.2e-223 780.4 722 59.1
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 9.4e-221 770.8 712 59.6
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 8.0e-220 767.7 724 59.1
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 7.0e-216 754.6 720 58.3
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.0e-215 753.1 725 56.8
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 4.5e-215 751.9 681 60.9
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.9e-214 749.2 722 57.5
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 5.0e-214 748.4 721 57.6
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 5.5e-213 745.0 708 58.3
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 9.4e-213 744.2 727 57.6
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.0e-211 738.8 722 57.3
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 2.0e-210 736.5 708 56.1
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 2.7e-207 726.1 651 60.2
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.6e-204 716.8 723 55.3
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.0e-203 714.1 726 55.0
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 4.0e-203 712.2 700 56.4
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.5e-202 710.3 724 54.3
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 6.3e-201 704.9 713 54.7
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.8e-200 703.4 697 55.2
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 3.5e-199 699.1 712 54.4
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 5.9e-199 698.4 727 52.8
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.8e-199 698.0 710 56.5
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.8e-199 698.0 710 56.5
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 5.0e-198 695.3 723 53.9
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.9e-197 693.3 719 55.4
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 7.3e-197 691.4 648 58.2
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.6e-196 690.3 721 52.8
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 2.3e-195 686.4 731 51.0
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 6.8e-195 684.9 716 53.8
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.2e-194 684.1 688 55.5
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 1.5e-194 683.7 713 54.6
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 5.8e-194 681.8 686 55.2
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 9.8e-194 681.0 722 54.8
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.7e-193 680.2 710 56.2
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 2.2e-193 679.9 720 54.2
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 6.4e-193 678.3 645 56.3
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.1e-192 677.6 730 51.4
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.1e-192 677.6 726 51.9
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 3.2e-192 676.0 712 53.9
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.4e-192 675.2 708 54.2
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 9.2e-192 674.5 723 53.4
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.7e-190 670.2 712 53.1
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 3.9e-190 669.1 741 50.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 3.9e-190 669.1 706 52.0
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 3.3e-189 666.0 709 54.0
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 4.3e-189 665.6 722 54.4
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 5.6e-189 665.2 585 60.9
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 9.5e-189 664.5 730 51.4
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-188 664.1 682 52.2
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.6e-188 663.7 730 52.9
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 8.0e-188 661.4 677 53.9
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 6.8e-187 658.3 719 52.7
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.9e-187 657.9 694 52.4
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 1.5e-186 657.1 743 49.1
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 2.6e-186 656.4 730 50.0
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 3.4e-186 656.0 679 53.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 4.4e-186 655.6 701 51.9
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 5.8e-186 655.2 729 53.1
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 7.5e-186 654.8 728 50.3
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-185 654.1 724 51.1
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 8.3e-185 651.4 725 50.3
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.1e-184 651.0 655 56.0
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 3.2e-184 649.4 729 52.9
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 3.2e-184 649.4 719 52.6
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 3.2e-184 649.4 719 52.4
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 9.2e-184 647.9 737 49.3
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 3.5e-183 646.0 719 52.6
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.0e-182 642.9 722 53.2
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.0e-182 642.1 683 51.5
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 6.6e-182 641.7 669 54.4
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 2.5e-181 639.8 719 51.2
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.5e-181 637.9 710 52.4
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.8e-180 636.3 686 51.7
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 4.0e-179 632.5 733 48.2
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 9.9e-178 627.9 719 50.5
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.2e-177 626.7 730 47.0
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 2.9e-177 626.3 749 49.9
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 2.7e-175 619.8 736 47.6
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 1.0e-174 617.8 698 51.9
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.3e-174 617.5 707 53.2
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.7e-174 617.1 618 54.0
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 5.1e-174 615.5 646 53.3
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.5e-173 613.2 676 52.1
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 5.6e-173 612.1 729 51.0
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 2.1e-172 610.1 701 51.5
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 2.4e-171 606.7 692 52.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.6e-170 603.2 713 49.9
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.3e-169 600.9 655 50.2
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.3e-169 600.9 727 48.0
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.2e-167 594.3 693 50.1
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 2.1e-167 593.6 724 48.2
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 7.8e-167 591.7 624 54.3
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 3.0e-166 589.7 725 47.9
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.0e-166 589.7 670 50.3
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.5e-165 587.4 722 47.9
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 1.5e-165 587.4 678 48.4
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 3.3e-165 586.3 724 46.4
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 5.6e-165 585.5 644 51.6
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 7.3e-165 585.1 712 47.9
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 9.6e-165 584.7 712 47.9
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 2.8e-164 583.2 689 48.9
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 8.1e-164 581.6 700 48.4
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.1e-163 581.3 695 46.6
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.8e-163 580.5 679 48.9
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.3e-161 574.3 719 47.1
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 7.1e-160 568.5 702 47.3
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 9.0e-155 551.6 665 49.3
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 3.8e-153 546.2 704 47.2
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 3.5e-151 539.7 688 49.1
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.8e-150 537.3 707 45.0
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.3e-150 537.0 554 54.7
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 7.4e-149 531.9 719 46.3
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.2e-146 524.6 502 58.6
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.3e-145 521.2 719 43.4
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 3.8e-137 493.0 742 43.5
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.9e-136 490.7 537 50.8
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 3.2e-128 463.4 547 48.4
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 9.4e-128 461.8 698 42.3
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.6e-122 443.7 521 49.7
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.1e-117 428.3 374 61.5
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 4.8e-116 422.9 464 51.3
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 1.1e-115 421.8 727 38.0
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.4e-110 404.8 680 40.3
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.1e-109 401.7 686 37.9
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.1e-107 393.3 706 37.0
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 2.6e-101 374.0 677 36.6
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 7.5e-101 372.5 673 36.7
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 3.5e-98 363.6 682 36.7
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 4.0e-94 350.1 738 34.8
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 6.3e-92 342.8 691 36.2
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 7.0e-91 339.3 747 35.1
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 8.6e-89 332.4 831 31.5
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 4.2e-88 330.1 662 35.0
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 1.6e-87 328.2 690 35.1
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 5.0e-81 306.6 568 36.3
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 9.8e-77 292.4 740 30.8
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 2.2e-76 291.2 292 56.2
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.2e-76 291.2 214 70.1
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 4.1e-75 287.0 590 35.1
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.6e-74 285.0 206 72.8
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 7.8e-74 282.7 334 46.4
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 1.5e-72 278.5 532 35.9
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.3e-72 277.3 552 36.2
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.4e-67 260.0 533 34.0
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.6e-55 221.9 337 38.3
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 5.6e-32 143.7 76 85.5
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.0e-28 132.9 268 37.7
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 6.5e-28 130.2 116 59.5
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.3e-20 105.9 177 39.5
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.1e-19 102.8 68 75.0
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 2.7e-18 98.2 62 72.6
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.0e-17 94.7 109 48.6
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.5e-13 82.4 152 36.2
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 2.2e-12 78.6 127 40.2
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 6.7e-09 67.0 52 67.3
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.3e-07 62.8 54 57.4
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.4e-06 59.3 60 50.0
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 6.9e-06 57.0 48 54.2


User provided reference genes

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