Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 5.8e-52 207.2 100 100.0
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 4.6e-41 171.0 89 92.1
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.9e-40 167.9 89 91.0
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.9e-40 167.9 89 91.0
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.3e-39 164.9 89 88.8
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 3.6e-38 161.4 90 87.8
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 1.1e-37 159.8 87 89.7
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 1.8e-37 159.1 89 86.5
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.8e-37 159.1 89 86.5
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 1.8e-37 159.1 87 87.4
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 1.8e-37 159.1 87 87.4
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.8e-37 159.1 87 87.4
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.8e-37 159.1 87 87.4
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.8e-37 159.1 89 87.6
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.8e-37 159.1 90 85.6
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.4e-37 158.7 89 86.5
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 2.4e-37 158.7 87 89.7
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.4e-37 158.7 87 89.7
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.4e-37 158.7 87 89.7
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.4e-37 158.7 87 87.4
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 3.1e-37 158.3 89 86.5
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 3.1e-37 158.3 89 86.5
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 3.1e-37 158.3 89 85.4
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 3.1e-37 158.3 89 85.4
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 3.1e-37 158.3 89 85.4
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 3.1e-37 158.3 89 85.4
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 5.2e-37 157.5 89 84.3
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 8.9e-37 156.8 87 86.2
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 8.9e-37 156.8 89 85.4
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 8.9e-37 156.8 87 86.2
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.2e-36 156.4 89 86.5
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.5e-36 156.0 87 85.1
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.5e-36 156.0 89 84.3
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 2.0e-36 155.6 87 86.2
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 2.0e-36 155.6 89 85.4
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 2.0e-36 155.6 87 85.1
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 2.6e-36 155.2 89 85.4
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 2.6e-36 155.2 89 84.3
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 2.6e-36 155.2 89 83.1
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 2.6e-36 155.2 89 83.1
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 3.4e-36 154.8 89 84.3
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.4e-36 154.8 87 86.2
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.4e-36 154.8 87 86.2
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 3.4e-36 154.8 87 86.2
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 4.4e-36 154.5 87 83.9
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 4.4e-36 154.5 87 85.1
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 4.4e-36 154.5 89 83.1
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 4.4e-36 154.5 87 83.9
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.4e-36 154.5 87 87.4
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.8e-36 154.1 87 83.9
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.8e-36 154.1 87 83.9
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 5.8e-36 154.1 87 85.1
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 5.8e-36 154.1 89 83.1
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 7.6e-36 153.7 89 80.9
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 9.9e-36 153.3 87 83.9
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 9.9e-36 153.3 87 83.9
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 9.9e-36 153.3 87 85.1
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.3e-35 152.9 87 83.9
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.3e-35 152.9 87 85.1
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.3e-35 152.9 87 83.9
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 2.2e-35 152.1 89 82.0
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 2.9e-35 151.8 86 84.9
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.9e-35 151.8 80 90.0
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.9e-35 151.8 80 90.0
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.9e-35 151.8 80 90.0
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 3.8e-35 151.4 89 82.0
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 3.8e-35 151.4 89 82.0
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 3.8e-35 151.4 87 82.8
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 4.9e-35 151.0 89 83.1
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 6.4e-35 150.6 89 80.9
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 6.4e-35 150.6 89 83.1
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 6.4e-35 150.6 89 80.9
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 8.4e-35 150.2 94 80.9
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.1e-34 149.8 89 80.9
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.1e-34 149.8 87 81.6
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 1.1e-34 149.8 89 80.9
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.1e-34 149.8 89 80.9
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 1.1e-34 149.8 89 80.9
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.4e-34 149.4 89 82.0
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.4e-34 149.4 89 80.9
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-34 149.4 89 83.1
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 1.9e-34 149.1 87 82.8
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.9e-34 149.1 89 82.0
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.9e-34 149.1 89 82.0
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.9e-34 149.1 89 82.0
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.9e-34 149.1 89 82.0
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.9e-34 149.1 89 82.0
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.9e-34 149.1 89 82.0
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 1.9e-34 149.1 83 86.7
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.4e-34 148.7 89 82.0
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 3.2e-34 148.3 89 79.8
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 3.2e-34 148.3 89 79.8
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.2e-34 148.3 89 79.8
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 4.2e-34 147.9 87 80.5
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 5.4e-34 147.5 89 80.9
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 5.4e-34 147.5 89 80.9
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 5.4e-34 147.5 89 80.9
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 5.4e-34 147.5 89 80.9
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 9.2e-34 146.7 87 79.3
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 4.6e-33 144.4 87 78.2
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 4.6e-33 144.4 87 78.2
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 4.6e-33 144.4 89 78.7
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 6.0e-33 144.1 89 78.7
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.3e-32 142.9 89 77.5
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.3e-32 142.1 89 78.7
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 3.0e-32 141.7 89 77.5
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 3.0e-32 141.7 89 77.5
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 5.1e-32 141.0 89 78.7
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 1.5e-31 139.4 76 89.5
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 3.3e-31 138.3 83 79.5
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 4.3e-31 137.9 70 91.4
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 7.3e-31 137.1 69 92.8
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.1e-29 133.3 69 91.3
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 1.1e-29 133.3 98 71.4
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.8e-29 132.5 89 74.2
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 3.1e-29 131.7 90 75.6
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 3.1e-29 131.7 69 88.4
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 2.6e-28 128.6 81 74.1
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 5.8e-28 127.5 89 68.5
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.3e-27 126.3 89 68.5
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 4.9e-27 124.4 93 71.0
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 3.2e-26 121.7 88 67.0
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 7.1e-26 120.6 84 66.7
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.3e-24 116.3 75 74.7
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 3.9e-24 114.8 90 57.8
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 5.1e-24 114.4 110 58.2
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.9e-23 112.5 81 66.7
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 2.8e-22 108.6 81 63.0
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 7.1e-18 94.0 82 48.8
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 2.1e-17 92.4 55 81.8
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 3.9e-16 88.2 56 78.6
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 3.9e-16 88.2 89 58.4
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.7e-16 87.4 54 77.8
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.3e-14 83.2 38 97.4
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 8.1e-14 80.5 56 73.2
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 8.1e-14 80.5 56 73.2
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.2e-12 76.6 60 60.0
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.2e-12 76.6 97 44.3
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 2.3e-08 62.4 35 80.0
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 3.9e-08 61.6 33 84.8
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 2.8e-06 55.5 26 96.2
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.8e-06 55.5 26 96.2


User provided reference genes

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