Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.1e-55 218.8 108 100.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.3e-49 199.5 108 92.6
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.1e-48 196.4 108 91.7
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 6.2e-44 180.6 100 90.0
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.5e-37 159.5 121 77.7
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.8e-35 152.5 123 71.5
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.0e-34 149.1 111 67.6
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.0e-33 146.7 108 68.5
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.1e-32 143.3 123 69.1
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.4e-32 142.9 108 65.7
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 5.5e-32 141.0 108 65.7
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.2e-31 139.8 113 64.6
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 1.2e-31 139.8 110 63.6
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.6e-31 139.4 110 64.5
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.6e-31 139.4 113 65.5
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.6e-31 138.3 110 60.9
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 6.1e-31 137.5 108 63.9
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.4e-30 136.3 122 60.7
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 6.7e-30 134.0 110 60.9
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.1e-29 133.3 111 59.5
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.5e-29 132.9 111 64.0
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.5e-29 132.9 111 64.0
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.5e-29 132.9 111 64.0
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 4.3e-29 131.3 112 60.7
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 5.7e-29 131.0 75 85.3
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 7.4e-29 130.6 111 60.4
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 9.7e-29 130.2 108 58.3
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.3e-28 129.8 111 59.5
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.7e-28 128.3 114 57.9
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.7e-28 128.3 114 57.9
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.7e-28 128.3 111 58.6
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.8e-27 125.9 111 63.1
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.8e-27 125.9 111 63.1
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.8e-27 125.9 111 58.6
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.8e-27 125.9 111 58.6
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.8e-27 125.9 108 59.3
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.3e-27 124.4 110 62.7
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.3e-27 124.4 110 63.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 9.1e-27 123.6 112 57.1
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.2e-26 123.2 110 62.7
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.7e-26 120.6 112 59.8
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 7.7e-26 120.6 112 60.7
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 2.2e-25 119.0 111 50.5
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.2e-25 119.0 114 57.0
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.2e-25 119.0 114 51.8
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.9e-25 118.6 111 53.2
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.5e-25 117.1 112 61.6
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 8.5e-25 117.1 108 52.8
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 8.5e-25 117.1 114 57.9
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.1e-24 116.7 111 52.3
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.1e-24 116.7 110 57.3
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.1e-24 116.7 110 58.2
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.1e-24 116.7 110 58.2
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.1e-24 116.7 112 58.0
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.4e-24 116.3 107 56.1
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.5e-24 115.5 108 51.9
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 3.2e-24 115.2 108 51.9
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 5.5e-24 114.4 108 52.8
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.5e-24 114.4 111 59.5
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.6e-23 112.8 109 52.3
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 3.6e-23 111.7 110 53.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 3.6e-23 111.7 110 53.6
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 4.7e-23 111.3 108 52.8
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 3.9e-22 108.2 98 57.1
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 3.9e-22 108.2 108 52.8
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 5.1e-22 107.8 108 54.6
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.8e-22 107.1 112 55.4
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.5e-21 106.3 112 52.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.0e-21 105.9 99 53.5
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.6e-21 105.5 111 53.2
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.6e-21 105.5 94 55.3
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 3.3e-21 105.1 93 54.8
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 4.4e-21 104.8 109 49.5
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 9.7e-21 103.6 106 50.9
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.3e-20 103.2 116 48.3
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.7e-20 102.8 111 49.5
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.2e-20 102.4 111 50.5
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.2e-20 102.4 111 55.9
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 2.2e-20 102.4 84 65.5
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.2e-20 102.4 94 53.2
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.7e-20 101.7 108 50.0
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.7e-20 101.7 117 50.4
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 4.8e-20 101.3 98 53.1
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 6.3e-20 100.9 110 50.9
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.2e-20 100.5 108 45.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-19 99.8 108 49.1
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 3.1e-19 98.6 108 48.1
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 3.1e-19 98.6 108 48.1
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 3.1e-19 98.6 110 50.0
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 3.1e-19 98.6 111 48.6
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 4.1e-19 98.2 112 50.9
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 5.3e-19 97.8 108 47.2
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 5.3e-19 97.8 113 46.9
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 9.1e-19 97.1 108 47.2
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 9.1e-19 97.1 114 46.5
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 9.1e-19 97.1 109 49.5
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.2e-18 96.7 108 47.2
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.2e-18 96.7 109 48.6
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 2.0e-18 95.9 93 54.8
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.0e-18 95.9 100 59.0
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.6e-18 95.5 115 47.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.6e-18 95.5 113 47.8
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.3e-17 93.2 108 46.3
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.2e-17 92.4 101 45.5
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.9e-17 92.0 104 48.1
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 2.9e-17 92.0 112 47.3
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.8e-17 91.7 116 44.0
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 5.0e-17 91.3 120 45.8
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.0e-17 91.3 116 44.0
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 6.5e-17 90.9 101 44.6
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.9e-16 89.4 97 46.4
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.5e-16 89.0 101 47.5
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 3.2e-16 88.6 108 44.4
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 3.2e-16 88.6 108 44.4
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 4.2e-16 88.2 108 44.4
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 4.2e-16 88.2 108 44.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 4.2e-16 88.2 108 44.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 4.2e-16 88.2 108 44.4
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.6e-15 86.3 106 46.2
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.1e-15 85.9 108 43.5
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 2.7e-15 85.5 117 41.9
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 4.7e-15 84.7 108 43.5
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.0e-15 84.0 105 43.8
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.0e-14 83.6 113 45.1
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 3.0e-14 82.0 112 44.6
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 3.0e-14 82.0 117 40.2
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 3.0e-14 82.0 103 45.6
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 3.9e-14 81.6 103 42.7
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 3.9e-14 81.6 96 42.7
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 5.2e-14 81.3 100 49.0
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 5.2e-14 81.3 82 46.3
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 5.2e-14 81.3 111 41.4
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 6.7e-14 80.9 112 41.1
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.6e-13 79.0 102 47.1
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.4e-13 78.2 101 40.6
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 3.7e-12 75.1 91 45.1
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 4.8e-12 74.7 108 39.8
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.1e-11 71.6 101 45.5
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.6e-10 69.7 113 42.5
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 4.5e-10 68.2 111 43.2
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.3e-09 66.6 94 40.4
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 3.8e-09 65.1 119 38.7
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 3.8e-09 65.1 110 40.9
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 1.1e-08 63.5 104 37.5
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.2e-07 60.1 54 51.9


User provided reference genes

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