Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0156861 Rosa chinensis HOM05D007219 ORTHO05D008995 1.7e-111 406.0 204 100.0
FvH4_6g41300 Fragaria vesca HOM05D007219 ORTHO05D008995 2.8e-101 372.1 200 92.5
FAN14G1895 Fragaria x ananassa HOM05D007219 ORTHO05D008995 1.4e-100 369.8 200 92.0
Prupe.3G202800 Prunus persica HOM05D007219 ORTHO05D008995 1.2e-93 346.7 198 86.4
MD09G1120700 Malus domestica HOM05D007219 ORTHO05D008995 7.5e-91 337.4 200 84.0
QL08p028873 Quercus lobata HOM05D007219 ORTHO05D008995 2.1e-85 319.3 196 80.1
CSS0025035 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 7.6e-83 310.8 191 80.1
CsaV3_7G002720 Cucumis sativus L. HOM05D007219 ORTHO05D008995 1.4e-81 306.6 198 78.3
FAN05G4854 Fragaria x ananassa HOM05D007219 ORTHO05D008995 1.4e-81 306.6 206 79.1
TAR626G0546 Trochodendron aralioides HOM05D007219 ORTHO05D008995 1.4e-81 306.6 193 77.2
GSVIVG01030037001 Vitis vinifera HOM05D007219 ORTHO05D008995 4.1e-81 305.1 190 77.9
Duzib138G0301 Durio zibethinus HOM05D007219 ORTHO05D008995 9.2e-81 303.9 193 77.7
Cc07_g19250 Coffea canephora HOM05D007219 ORTHO05D008995 2.7e-80 302.4 192 77.6
Lj6g0005071 Lotus japonicus HOM05D007219 ORTHO05D008995 6.0e-80 301.2 196 74.5
Atru.chr6.3346 Acer truncatum HOM05D007219 ORTHO05D008995 2.3e-79 299.3 194 77.3
vmacro12114 Vaccinium macrocarpon HOM05D007219 ORTHO05D008995 3.9e-79 298.5 192 76.0
Nn1g03266 Nelumbo nucifera HOM05D007219 ORTHO05D008995 5.1e-79 298.1 187 77.5
Cpa.g.sc395.3 Carica papaya HOM05D007219 ORTHO05D008995 1.5e-78 296.6 193 76.2
Hma1.2p1_0133F.1_g061230 Hydrangea macrophylla HOM05D007219 ORTHO05D008995 2.5e-78 295.8 192 76.0
Glyma.13G025700 Glycine max HOM05D007219 ORTHO05D008995 3.3e-78 295.4 197 74.1
Hund24148 Selenicereus undatus HOM05D007219 ORTHO05D008995 3.3e-78 295.4 191 78.0
Migut.M00020 Erythranthe guttata HOM05D007219 ORTHO05D008995 4.3e-78 295.0 192 75.0
Dinv05845 Davidia involucrata HOM05D007219 ORTHO05D008995 5.6e-78 294.7 188 76.6
CAN.G716.12 Capsicum annuum HOM05D007219 ORTHO05D008995 1.2e-77 293.5 193 76.2
Thecc.01G189100 Theobroma cacao HOM05D007219 ORTHO05D008995 1.2e-77 293.5 193 75.6
Gorai.001G193200 Gossypium raimondii HOM05D007219 ORTHO05D008995 8.1e-77 290.8 192 76.0
Gohir.A07G167500 Gossypium hirsutum HOM05D007219 ORTHO05D008995 1.1e-76 290.4 192 76.0
THA.LOC104826618 Tarenaya hassleriana HOM05D007219 ORTHO05D008995 1.1e-76 290.4 194 73.2
Nitab4.5_0011106g0020 Nicotiana tabacum HOM05D007219 ORTHO05D008995 1.8e-76 289.7 192 75.0
Gohir.D07G173000 Gossypium hirsutum HOM05D007219 ORTHO05D008995 2.4e-76 289.3 192 75.5
CANSAT64G0298 Cannabis sativa HOM05D007219 ORTHO05D008995 3.1e-76 288.9 192 74.5
Peaxi162Scf00147g01822 Petunia axillaris HOM05D007219 ORTHO05D008995 3.1e-76 288.9 193 74.1
Sopen05g025870 Solanum pennellii HOM05D007219 ORTHO05D008995 3.1e-76 288.9 193 74.1
Medtr3g083200 Medicago truncatula HOM05D007219 ORTHO05D008995 6.8e-76 287.7 197 71.1
Psat5g102680 Pisum sativum HOM05D007219 ORTHO05D008995 1.2e-75 287.0 196 70.4
MSTRG.14930 Avicennia marina HOM05D007219 ORTHO05D008995 2.0e-75 286.2 193 72.5
Sp3g23430 Schrenkiella parvula HOM05D007219 ORTHO05D008995 2.6e-75 285.8 194 70.6
Potri.014G161800 Populus trichocarpa HOM05D007219 ORTHO05D008995 3.4e-75 285.4 197 71.6
CiPaw.03G278000 Carya illinoinensis HOM05D007219 ORTHO05D008995 4.4e-75 285.0 196 73.5
Eucgr.K00659 Eucalyptus grandis HOM05D007219 ORTHO05D008995 4.4e-75 285.0 191 73.8
Phvul.006G013300 Phaseolus vulgaris HOM05D007219 ORTHO05D008995 1.3e-74 283.5 199 69.8
TPR.G19322 Trifolium pratense HOM05D007219 ORTHO05D008995 1.3e-74 283.5 197 69.5
AT2G04845 Arabidopsis thaliana HOM05D007219 ORTHO05D008995 1.7e-74 283.1 194 70.6
TWI36G0002 Tripterygium wilfordii HOM05D007219 ORTHO05D008995 3.8e-74 282.0 193 71.0
SalBow7G0564 Salvia bowleyana HOM05D007219 ORTHO05D008995 4.9e-74 281.6 192 72.4
BolC3t17801H Brassica oleracea HOM05D007219 ORTHO05D008995 8.4e-74 280.8 193 69.4
arahy.Tifrunner.gnm1.ann1.N6EW4G Arachis hypogaea HOM05D007219 ORTHO05D008995 1.4e-73 280.0 195 69.2
AL3G42440 Arabidopsis lyrata HOM05D007219 ORTHO05D008995 1.9e-73 279.6 194 69.6
CARHR102840 Cardamine hirsuta HOM05D007219 ORTHO05D008995 1.9e-73 279.6 194 69.1
HanXRQChr12g0373931 Helianthus annuus HOM05D007219 ORTHO05D008995 2.4e-73 279.3 187 73.8
Sed0018447 Sechium edule HOM05D007219 ORTHO05D008995 3.2e-73 278.9 172 81.4
Lalb_Chr22g0360881 Lupinus albus HOM05D007219 ORTHO05D008995 4.2e-73 278.5 200 67.0
Manes.12G083700 Manihot esculenta HOM05D007219 ORTHO05D008995 4.2e-73 278.5 179 76.0
Haze_12702 Corylus avellana HOM05D007219 ORTHO05D008995 5.4e-73 278.1 191 73.8
PGR142G0267 Punica granatum HOM05D007219 ORTHO05D008995 5.4e-73 278.1 195 71.8
Carub.0003s2645 Capsella rubella HOM05D007219 ORTHO05D008995 7.1e-73 277.7 194 69.1
Lsat_1_v5_gn_5_121560 Lactuca sativa HOM05D007219 ORTHO05D008995 9.3e-73 277.3 193 70.5
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 1.2e-72 276.9 194 69.1
ECA234G4660 Erigeron canadensis HOM05D007219 ORTHO05D008995 1.6e-72 276.6 193 71.0
Thhalv10002661m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 2.7e-72 275.8 193 70.5
PGSC0003DMG400020758 Solanum tuberosum HOM05D007219 ORTHO05D008995 6.0e-72 274.6 169 79.9
Aqoxy1G04023 Aquilegia oxysepala HOM05D007219 ORTHO05D008995 7.8e-72 274.2 198 68.7
MELO3C024213.2 Cucumis melo HOM05D007219 ORTHO05D008995 1.7e-71 273.1 198 72.2
Oeu029809.1 Olea europaea HOM05D007219 ORTHO05D008995 5.1e-71 271.6 192 68.8
PSO302G0207 Papaver somniferum HOM05D007219 ORTHO05D008995 7.3e-70 267.7 178 74.7
DCAR_019229 Daucus carota HOM05D007219 ORTHO05D008995 1.3e-69 266.9 190 70.5
ATR0712G058 Amborella trichopoda HOM05D007219 ORTHO05D008995 3.1e-68 262.3 192 66.1
CDE10G1006 Ceratophyllum demersum HOM05D007219 ORTHO05D008995 3.1e-68 262.3 194 67.0
FAN02G0754 Fragaria x ananassa HOM05D007219 ORTHO05D008995 1.5e-67 260.0 200 70.5
Actinidia07878 Actinidia chinensis HOM05D007219 ORTHO05D008995 2.0e-67 259.6 168 76.8
Duzib133G0547 Durio zibethinus HOM05D007219 ORTHO05D008995 9.3e-65 250.8 185 69.7
AUR62017530 Chenopodium quinoa HOM05D007219 ORTHO05D008995 2.7e-64 249.2 254 53.1
HPP92_020392 Vanilla planifolia HOM05D007219 ORTHO05D008995 2.7e-64 249.2 174 70.1
Sabra14G0123400 Salix brachista HOM05D007219 ORTHO05D008995 6.6e-63 244.6 205 62.9
MBI16_g42309_MAGBIO Magnolia biondii HOM05D007219 ORTHO05D008995 1.5e-62 243.4 173 71.7
QL08p028923 Quercus lobata HOM05D007219 ORTHO05D008995 3.3e-62 242.3 342 43.9
Ciclev10016673m.g Citrus clementina HOM05D007219 ORTHO05D008995 4.3e-62 241.9 154 76.6
COL.COLO4_04268 Corchorus olitorius HOM05D007219 ORTHO05D008995 1.3e-61 240.4 149 77.2
Dinv07849 Davidia involucrata HOM05D007219 ORTHO05D008995 2.1e-61 239.6 143 80.4
EL10Ac9g22747 Beta vulgaris HOM05D007219 ORTHO05D008995 1.4e-60 236.9 193 64.8
arahy.Tifrunner.gnm1.ann1.E78GDQ Arachis hypogaea HOM05D007219 ORTHO05D008995 7.6e-59 231.1 321 42.4
arahy.Tifrunner.gnm1.ann1.XZ9N91 Arachis hypogaea HOM05D007219 ORTHO05D008995 7.6e-59 231.1 321 42.4
Os03g0194400 Oryza sativa ssp. japonica HOM05D007219 ORTHO05D008995 1.2e-56 223.8 183 61.7
SGA_v2.0_scaffold73G24522 Striga asiatica HOM05D007219 ORTHO05D008995 2.7e-56 222.6 170 67.6
Zm00001eb401150 Zea mays HOM05D007219 ORTHO05D008995 3.1e-52 209.1 150 64.7
ClCG02G002620 Citrullus lanatus HOM05D007219 ORTHO05D008995 1.4e-49 200.3 137 75.9
SMO115G0308 Selaginella moellendorffii HOM05D007219 ORTHO05D008995 9.3e-49 197.6 176 55.1
Ah.14g082820 Amaranthus hybridus HOM05D007219 ORTHO05D008995 1.9e-46 189.9 135 69.6
Cfa014252 Carpinus fangiana HOM05D007219 ORTHO05D008995 7.4e-46 188.0 137 67.2
Sc21g0000880 Simmondsia chinensis HOM05D007219 ORTHO05D008995 2.1e-45 186.4 110 77.3
AUR62015074 Chenopodium quinoa HOM05D007219 ORTHO05D008995 1.8e-44 183.3 136 66.9
VMungo0540G0477 Vigna mungo HOM05D007219 ORTHO05D008995 3.1e-44 182.6 194 53.1
Mapoly0089s0028 Marchantia polymorpha HOM05D007219 ORTHO05D008995 4.5e-43 178.7 170 51.2
Ca_16365_v3 Cicer arietinum L. HOM05D007219 ORTHO05D008995 2.2e-42 176.4 121 71.1
Rhsim06G0172900 Rhododendron simsii HOM05D007219 ORTHO05D008995 1.5e-38 163.7 233 47.2
MCO15G116 Micromonas commoda HOM05D007219 ORTHO05D008995 5.3e-36 155.2 178 46.1
CBR_g31837 Chara braunii HOM05D007219 ORTHO05D008995 3.6e-32 142.5 276 34.1
Nitab4.5_0002877g0050 Nicotiana tabacum HOM05D007219 ORTHO05D008995 2.2e-29 133.3 92 76.1
SEGI_01956 Sequoiadendron giganteum HOM05D007219 ORTHO05D008995 4.8e-29 132.1 82 73.2
MD17G1111700 Malus domestica HOM05D007219 ORTHO05D008995 1.4e-25 120.6 116 55.2
CSS0035148 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 7.9e-24 114.8 83 73.5
MD17G1111600 Malus domestica HOM05D007219 ORTHO05D008995 8.2e-21 104.8 72 76.4
Thhalv10003074m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 3.8e-18 95.9 114 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1409 Anthoceros agrestis HOM05D007219 ORTHO05D008995 7.2e-17 91.7 129 42.6
Actinidia09773 Actinidia chinensis HOM05D007219 ORTHO05D008995 8.0e-16 88.2 55 74.5
PRCOL_00004041 Prasinoderma coloniale HOM05D007219 ORTHO05D008995 1.2e-14 84.3 164 35.4
Cre03.g184151 Chlamydomonas reinhardtii HOM05D007219 ORTHO05D008995 1.2e-11 74.3 100 45.0
CSS0030489 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 1.5e-09 67.4 41 70.7
Oeu027288.1 Olea europaea HOM05D007219 ORTHO05D008995 3.2e-09 66.2 49 69.4
CSS0021882 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.4e-09 64.7 34 82.4


User provided reference genes

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