Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.9e-284 981.9 498 100.0
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 6.5e-253 877.1 504 89.9
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.1e-251 872.1 504 89.5
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.9e-251 870.2 504 89.3
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.0e-250 869.8 503 89.3
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.9e-235 817.0 497 84.7
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 2.6e-209 732.3 508 77.0
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 4.1e-207 724.9 503 76.9
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.6e-206 723.0 510 75.3
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 1.6e-198 696.4 517 74.3
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 4.2e-196 688.3 510 71.8
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 5.5e-196 688.0 509 73.7
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 1.8e-194 682.9 510 71.4
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 3.0e-194 682.2 509 72.9
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 5.7e-193 677.9 512 70.7
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.7e-192 676.4 512 73.4
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 4.9e-192 674.9 508 70.7
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 7.3e-188 661.0 515 69.3
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 3.6e-187 658.7 512 69.5
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 1.8e-186 656.4 515 69.5
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 2.3e-186 656.0 508 69.5
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 5.2e-186 654.8 515 68.7
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 5.2e-186 654.8 517 69.1
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 2.0e-185 652.9 520 67.9
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 3.4e-185 652.1 509 69.7
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.7e-184 648.7 513 69.4
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 1.4e-183 646.7 516 68.2
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 4.6e-182 641.7 523 66.7
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.7e-181 639.8 514 66.9
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.5e-180 636.7 510 68.2
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 2.5e-180 636.0 505 69.3
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 3.3e-180 635.6 511 68.3
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 5.6e-180 634.8 504 68.1
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 4.7e-179 631.7 514 68.7
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 6.2e-179 631.3 513 68.0
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.4e-178 630.2 505 66.9
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 1.4e-178 630.2 519 67.1
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.8e-178 629.8 511 67.1
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.3e-178 629.4 507 68.0
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 6.8e-178 627.9 516 67.6
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 2.6e-177 625.9 520 67.3
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 2.6e-177 625.9 512 67.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 9.8e-177 624.0 511 67.7
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.7e-176 623.2 513 66.1
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.2e-176 622.9 511 65.8
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 6.4e-176 621.3 510 67.3
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 3.2e-175 619.0 511 66.9
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 4.1e-175 618.6 507 65.7
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 6.0e-174 614.8 509 67.4
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 7.8e-174 614.4 524 65.5
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.0e-173 614.0 508 67.7
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 8.6e-173 610.9 518 64.5
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 8.6e-173 610.9 511 65.9
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 1.5e-172 610.1 514 66.7
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 3.3e-172 609.0 515 65.8
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 7.3e-172 607.8 513 66.1
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 7.3e-172 607.8 505 66.1
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 1.6e-171 606.7 534 64.6
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 2.1e-171 606.3 517 65.4
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.1e-171 606.3 524 66.0
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.8e-171 605.9 516 65.5
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.6e-171 605.5 520 66.2
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 3.6e-171 605.5 514 66.5
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 6.2e-171 604.7 523 64.1
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 1.4e-170 603.6 512 65.2
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.8e-170 603.2 517 67.1
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 3.1e-170 602.4 515 66.6
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 6.8e-170 601.3 516 64.3
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 2.0e-169 599.7 511 64.4
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 2.0e-169 599.7 507 64.3
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.6e-169 599.4 508 66.7
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 4.4e-169 598.6 461 70.5
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 5.8e-169 598.2 513 64.7
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 7.6e-169 597.8 511 65.9
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 4.9e-168 595.1 520 65.6
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 6.4e-168 594.7 506 63.6
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.1e-167 594.0 503 65.6
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.4e-167 592.8 503 65.4
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 2.4e-167 592.8 503 64.6
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.2e-167 592.4 523 63.5
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 5.4e-167 591.7 505 65.1
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.2e-166 590.5 513 63.4
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.6e-166 590.1 508 64.8
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.7e-166 589.3 503 64.2
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 4.6e-166 588.6 505 64.4
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 5.1e-165 585.1 502 65.5
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.1e-164 583.9 502 65.3
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 9.6e-164 580.9 522 63.4
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 1.1e-162 577.4 507 63.9
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 2.9e-160 569.3 509 62.9
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 1.1e-159 567.4 524 62.8
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 2.4e-159 566.2 509 62.7
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 4.2e-159 565.5 525 63.4
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.2e-158 563.9 520 63.1
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.5e-156 557.0 527 61.1
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 6.9e-154 548.1 465 64.5
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 2.6e-153 546.2 518 58.7
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 2.7e-150 536.2 505 60.8
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 6.2e-147 525.0 538 57.4
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.4e-146 523.1 518 58.1
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 7.6e-145 518.1 537 57.4
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 2.7e-142 509.6 456 63.6
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 3.5e-142 509.2 517 56.3
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 4.0e-138 495.7 518 57.3
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.3e-133 480.7 511 56.0
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 5.1e-133 478.8 513 56.3
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 6.7e-133 478.4 511 56.0
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.1e-132 477.6 510 57.1
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 4.5e-129 465.7 477 56.6
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 3.7e-123 446.0 543 51.2
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 5.7e-116 422.2 505 53.1
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 4.7e-110 402.5 306 69.6
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 2.0e-108 397.1 494 52.0
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 6.3e-107 392.1 514 48.2
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 4.2e-103 379.4 527 46.7
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 3.5e-97 359.8 292 66.4
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.0e-93 348.2 510 44.5
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.3e-88 331.3 501 44.7
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 4.0e-77 293.1 573 38.0
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 1.2e-57 228.4 283 48.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 8.4e-51 205.7 199 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.1e-47 195.3 334 39.8
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 1.6e-33 148.3 274 40.1
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.1e-32 143.3 84 81.0
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 1.1e-26 125.6 99 67.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 4.0e-21 107.1 522 25.9
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 1.7e-19 101.7 510 26.1
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.2e-17 95.5 72 63.9
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.6e-17 95.1 54 79.6
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 2.9e-11 74.3 63 57.1
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 8.5e-11 72.8 193 32.6
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.7e-09 67.8 64 56.2
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 7.9e-09 66.2 68 58.8


User provided reference genes

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