Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0156731 Rosa chinensis HOM05D003037 ORTHO05D003659 1.3e-76 289.7 148 100.0
FvH4_7g02550 Fragaria vesca HOM05D003037 ORTHO05D003659 7.5e-24 114.4 184 44.6
FAN03G1983 Fragaria x ananassa HOM05D003037 ORTHO05D003659 7.5e-24 114.4 184 44.6
FAN06G4382 Fragaria x ananassa HOM05D003037 ORTHO05D003659 7.5e-24 114.4 184 44.6
FAN10G2304 Fragaria x ananassa HOM05D003037 ORTHO05D003659 7.5e-24 114.4 184 44.6
FAN01G1632 Fragaria x ananassa HOM05D003037 ORTHO05D003659 1.7e-23 113.2 184 44.0
RcHm_v2.0_Chr1g0321271 Rosa chinensis HOM05D003037 ORTHO05D003659 2.9e-23 112.5 184 44.0
MD05G1010900 Malus domestica HOM05D003037 ORTHO05D003659 4.9e-23 111.7 184 44.0
MD10G1009700 Malus domestica HOM05D003037 ORTHO05D003659 4.9e-23 111.7 184 42.9
Prupe.8G013600 Prunus persica HOM05D003037 ORTHO05D003659 8.3e-23 110.9 184 43.5
Gohir.D04G175800 Gossypium hirsutum HOM05D003037 ORTHO05D003659 5.4e-22 108.2 184 41.8
unitig_747.g21264 Utricularia gibba HOM05D003037 ORTHO05D003659 5.4e-22 108.2 168 45.2
Cpa.g.sc30.45 Carica papaya HOM05D003037 ORTHO05D003659 9.2e-22 107.5 184 42.4
Migut.B00789 Erythranthe guttata HOM05D003037 ORTHO05D003659 9.2e-22 107.5 184 42.9
Cfa005476 Carpinus fangiana HOM05D003037 ORTHO05D003659 1.2e-21 107.1 184 41.8
ECA240G1415 Erigeron canadensis HOM05D003037 ORTHO05D003659 1.2e-21 107.1 184 42.4
Manes.07G022900 Manihot esculenta HOM05D003037 ORTHO05D003659 1.2e-21 107.1 184 42.4
HanXRQChr03g0065191 Helianthus annuus HOM05D003037 ORTHO05D003659 1.6e-21 106.7 184 42.4
Gorai.012G167100 Gossypium raimondii HOM05D003037 ORTHO05D003659 2.1e-21 106.3 184 41.3
CiPaw.05G051700 Carya illinoinensis HOM05D003037 ORTHO05D003659 2.7e-21 105.9 184 41.3
Cc02_g22990 Coffea canephora HOM05D003037 ORTHO05D003659 2.7e-21 105.9 188 41.5
Gohir.A04G130600 Gossypium hirsutum HOM05D003037 ORTHO05D003659 2.7e-21 105.9 184 41.3
QL02p100067 Quercus lobata HOM05D003037 ORTHO05D003659 2.7e-21 105.9 188 41.0
Duzib052G1010 Durio zibethinus HOM05D003037 ORTHO05D003659 3.5e-21 105.5 184 41.3
AUR62014220 Chenopodium quinoa HOM05D003037 ORTHO05D003659 4.6e-21 105.1 184 41.8
AUR62041122 Chenopodium quinoa HOM05D003037 ORTHO05D003659 4.6e-21 105.1 184 41.8
Lsat_1_v5_gn_9_120700 Lactuca sativa HOM05D003037 ORTHO05D003659 4.6e-21 105.1 184 42.4
Atru.chr6.760 Acer truncatum HOM05D003037 ORTHO05D003659 6.0e-21 104.8 184 40.8
Duzib248G0822 Durio zibethinus HOM05D003037 ORTHO05D003659 6.0e-21 104.8 184 40.8
QL02p100153 Quercus lobata HOM05D003037 ORTHO05D003659 6.0e-21 104.8 188 40.4
CANSAT35G1041 Cannabis sativa HOM05D003037 ORTHO05D003659 7.8e-21 104.4 184 41.3
TAR624G0307 Trochodendron aralioides HOM05D003037 ORTHO05D003659 7.8e-21 104.4 184 41.3
COL.COLO4_17755 Corchorus olitorius HOM05D003037 ORTHO05D003659 1.0e-20 104.0 184 40.8
Haze_01828 Corylus avellana HOM05D003037 ORTHO05D003659 1.0e-20 104.0 147 44.9
Dinv19397 Davidia involucrata HOM05D003037 ORTHO05D003659 1.0e-20 104.0 184 41.8
Phvul.006G218100 Phaseolus vulgaris HOM05D003037 ORTHO05D003659 1.3e-20 103.6 184 39.7
PGR142G1570 Punica granatum HOM05D003037 ORTHO05D003659 1.3e-20 103.6 184 41.3
Sed0009851 Sechium edule HOM05D003037 ORTHO05D003659 1.3e-20 103.6 184 41.3
Ciclev10003581m.g Citrus clementina HOM05D003037 ORTHO05D003659 1.7e-20 103.2 147 44.9
Migut.N00833 Erythranthe guttata HOM05D003037 ORTHO05D003659 1.7e-20 103.2 184 40.8
Hma1.2p1_0427F.1_g150700 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 1.7e-20 103.2 184 41.3
SalBow3G2424 Salvia bowleyana HOM05D003037 ORTHO05D003659 1.7e-20 103.2 184 41.3
SGA_v2.0_scaffold8G04432 Striga asiatica HOM05D003037 ORTHO05D003659 2.3e-20 102.8 184 40.8
AL2G17980 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 3.0e-20 102.4 184 40.8
arahy.Tifrunner.gnm1.ann1.Y8ZHMJ Arachis hypogaea HOM05D003037 ORTHO05D003659 3.0e-20 102.4 184 40.8
ClCG11G013340 Citrullus lanatus HOM05D003037 ORTHO05D003659 3.0e-20 102.4 184 40.8
MELO3C011826.2 Cucumis melo HOM05D003037 ORTHO05D003659 3.0e-20 102.4 184 40.2
DCAR_025355 Daucus carota HOM05D003037 ORTHO05D003659 3.0e-20 102.4 184 41.3
Gohir.D12G042900 Gossypium hirsutum HOM05D003037 ORTHO05D003659 3.0e-20 102.4 184 39.7
Gorai.008G044900 Gossypium raimondii HOM05D003037 ORTHO05D003659 3.0e-20 102.4 184 39.7
GSVIVG01023275001 Vitis vinifera HOM05D003037 ORTHO05D003659 3.0e-20 102.4 184 40.8
Gohir.A12G043400 Gossypium hirsutum HOM05D003037 ORTHO05D003659 3.9e-20 102.1 184 39.7
Medtr4g130680 Medicago truncatula HOM05D003037 ORTHO05D003659 3.9e-20 102.1 184 40.8
Ca_00048_v3 Cicer arietinum L. HOM05D003037 ORTHO05D003659 5.1e-20 101.7 184 39.7
ECA236G0695 Erigeron canadensis HOM05D003037 ORTHO05D003659 5.1e-20 101.7 184 40.8
VMungo0540G1935 Vigna mungo HOM05D003037 ORTHO05D003659 5.1e-20 101.7 184 39.1
AT1G58080 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 6.6e-20 101.3 184 40.2
MSTRG.16497 Avicennia marina HOM05D003037 ORTHO05D003659 6.6e-20 101.3 184 40.2
BcaC02g10704 Brassica carinata HOM05D003037 ORTHO05D003659 6.6e-20 101.3 184 40.2
arahy.Tifrunner.gnm1.ann1.3Q8GGF Arachis hypogaea HOM05D003037 ORTHO05D003659 8.6e-20 100.9 184 40.2
BolC4t24107H Brassica oleracea HOM05D003037 ORTHO05D003659 8.6e-20 100.9 184 39.1
CsaV3_5G029840 Cucumis sativus L. HOM05D003037 ORTHO05D003659 8.6e-20 100.9 184 39.7
PGR042G0094 Punica granatum HOM05D003037 ORTHO05D003659 8.6e-20 100.9 184 40.2
PGSC0003DMG400024926 Solanum tuberosum HOM05D003037 ORTHO05D003659 8.6e-20 100.9 184 39.7
Aa31LG1G5170 Aethionema arabicum HOM05D003037 ORTHO05D003659 1.1e-19 100.5 183 39.3
CSS0012029 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 1.1e-19 100.5 184 40.8
CSS0041282 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 1.1e-19 100.5 184 40.8
Lsat_1_v5_gn_9_120721 Lactuca sativa HOM05D003037 ORTHO05D003659 1.1e-19 100.5 181 41.4
Manes.10G120100 Manihot esculenta HOM05D003037 ORTHO05D003659 1.1e-19 100.5 184 40.2
PSO541G5800 Papaver somniferum HOM05D003037 ORTHO05D003659 1.1e-19 100.5 184 39.7
PSO675G4829 Papaver somniferum HOM05D003037 ORTHO05D003659 1.1e-19 100.5 184 39.7
THA.LOC104823696 Tarenaya hassleriana HOM05D003037 ORTHO05D003659 1.1e-19 100.5 184 39.7
Carub.0002s0655 Capsella rubella HOM05D003037 ORTHO05D003659 1.5e-19 100.1 184 39.7
CARHR053980 Cardamine hirsuta HOM05D003037 ORTHO05D003659 1.5e-19 100.1 181 40.3
Thhalv10023501m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 1.5e-19 100.1 184 39.7
Lj4g0001882 Lotus japonicus HOM05D003037 ORTHO05D003659 1.5e-19 100.1 184 39.7
MBI05_g00183_MAGBIO Magnolia biondii HOM05D003037 ORTHO05D003659 1.5e-19 100.1 184 40.8
Medtr2g006040 Medicago truncatula HOM05D003037 ORTHO05D003659 1.5e-19 100.1 184 39.7
Nitab4.5_0000948g0100 Nicotiana tabacum HOM05D003037 ORTHO05D003659 1.5e-19 100.1 178 40.4
Sc16g0002460 Simmondsia chinensis HOM05D003037 ORTHO05D003659 1.9e-19 99.8 184 39.7
Ah.03g137100 Amaranthus hybridus HOM05D003037 ORTHO05D003659 2.5e-19 99.4 184 38.6
AL1G20370 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 2.5e-19 99.4 184 39.7
A09p18570 Brassica napus HOM05D003037 ORTHO05D003659 2.5e-19 99.4 185 40.0
C09p23190 Brassica napus HOM05D003037 ORTHO05D003659 2.5e-19 99.4 185 40.0
BolC9t55238H Brassica oleracea HOM05D003037 ORTHO05D003659 2.5e-19 99.4 185 40.0
BraA09t37483Z Brassica rapa HOM05D003037 ORTHO05D003659 2.5e-19 99.4 185 40.0
Glyma.03G176400 Glycine max HOM05D003037 ORTHO05D003659 2.5e-19 99.4 184 38.6
QL02p100083 Quercus lobata HOM05D003037 ORTHO05D003659 2.5e-19 99.4 199 38.2
Rhsim11G0125200 Rhododendron simsii HOM05D003037 ORTHO05D003659 2.5e-19 99.4 184 41.3
SGA_v2.0_scaffold272G46366 Striga asiatica HOM05D003037 ORTHO05D003659 2.5e-19 99.4 184 40.8
Actinidia00185 Actinidia chinensis HOM05D003037 ORTHO05D003659 3.3e-19 99.0 184 40.2
Solyc01g103750.4 Solanum lycopersicum HOM05D003037 ORTHO05D003659 3.3e-19 99.0 184 39.1
Sopen01g046150 Solanum pennellii HOM05D003037 ORTHO05D003659 3.3e-19 99.0 184 39.1
Ah.02g126950 Amaranthus hybridus HOM05D003037 ORTHO05D003659 4.3e-19 98.6 184 40.2
Hma1.2p1_1108F.1_g257915 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 4.3e-19 98.6 184 39.1
Hma1.2p1_1108F.1_g257920 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 4.3e-19 98.6 184 39.1
QL02p100111 Quercus lobata HOM05D003037 ORTHO05D003659 4.3e-19 98.6 105 51.4
TAR381G0039 Trochodendron aralioides HOM05D003037 ORTHO05D003659 4.3e-19 98.6 184 39.7
Sed0025195 Sechium edule HOM05D003037 ORTHO05D003659 5.6e-19 98.2 183 38.3
vmacro01725 Vaccinium macrocarpon HOM05D003037 ORTHO05D003659 5.6e-19 98.2 184 40.2
Carub.0001s0915 Capsella rubella HOM05D003037 ORTHO05D003659 7.3e-19 97.8 184 39.1
RcHm_v2.0_Chr1g0321261 Rosa chinensis HOM05D003037 ORTHO05D003659 7.3e-19 97.8 187 40.1
MSTRG.27854 Avicennia marina HOM05D003037 ORTHO05D003659 9.5e-19 97.4 184 39.1
BcaC09g49512 Brassica carinata HOM05D003037 ORTHO05D003659 9.5e-19 97.4 184 39.7
A01p28170 Brassica napus HOM05D003037 ORTHO05D003659 9.5e-19 97.4 185 39.5
C01p35730 Brassica napus HOM05D003037 ORTHO05D003659 9.5e-19 97.4 185 39.5
BolC1t03532H Brassica oleracea HOM05D003037 ORTHO05D003659 9.5e-19 97.4 185 39.5
BraA01t02947Z Brassica rapa HOM05D003037 ORTHO05D003659 9.5e-19 97.4 185 39.5
Glyma.19G177100 Glycine max HOM05D003037 ORTHO05D003659 9.5e-19 97.4 184 38.0
Nn4g24648 Nelumbo nucifera HOM05D003037 ORTHO05D003659 9.5e-19 97.4 184 39.7
Actinidia39012 Actinidia chinensis HOM05D003037 ORTHO05D003659 1.6e-18 96.7 184 39.7
CDE11G0137 Ceratophyllum demersum HOM05D003037 ORTHO05D003659 2.1e-18 96.3 193 38.9
HanXRQChr07g0187481 Helianthus annuus HOM05D003037 ORTHO05D003659 2.1e-18 96.3 184 39.1
Thhalv10007791m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 2.8e-18 95.9 184 38.6
Sp2g05490 Schrenkiella parvula HOM05D003037 ORTHO05D003659 2.8e-18 95.9 181 39.2
Lalb_Chr25g0278781 Lupinus albus HOM05D003037 ORTHO05D003659 4.7e-18 95.1 181 39.2
Peaxi162Scf00011g00092 Petunia axillaris HOM05D003037 ORTHO05D003659 4.7e-18 95.1 184 38.6
CARHR009780 Cardamine hirsuta HOM05D003037 ORTHO05D003659 6.2e-18 94.7 184 38.6
Peaxi162Scf00002g02511 Petunia axillaris HOM05D003037 ORTHO05D003659 6.2e-18 94.7 184 39.1
AT1G09795 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 8.1e-18 94.4 184 38.6
EL10Ac6g14061 Beta vulgaris HOM05D003037 ORTHO05D003659 8.1e-18 94.4 184 38.6
Aa31LG2G11000 Aethionema arabicum HOM05D003037 ORTHO05D003659 1.1e-17 94.0 184 38.0
A06p06470 Brassica napus HOM05D003037 ORTHO05D003659 1.4e-17 93.6 184 38.6
BraA06t23858Z Brassica rapa HOM05D003037 ORTHO05D003659 1.4e-17 93.6 184 38.6
Sp1g08400 Schrenkiella parvula HOM05D003037 ORTHO05D003659 1.4e-17 93.6 184 38.0
Eucgr.G00352 Eucalyptus grandis HOM05D003037 ORTHO05D003659 1.8e-17 93.2 184 40.2
THA.LOC104816806 Tarenaya hassleriana HOM05D003037 ORTHO05D003659 1.8e-17 93.2 147 41.5
Nitab4.5_0002596g0060 Nicotiana tabacum HOM05D003037 ORTHO05D003659 2.3e-17 92.8 186 38.7
BcaC05g24849 Brassica carinata HOM05D003037 ORTHO05D003659 3.1e-17 92.4 184 38.0
Prupe.8G013100 Prunus persica HOM05D003037 ORTHO05D003659 3.1e-17 92.4 178 40.4
C05p07880 Brassica napus HOM05D003037 ORTHO05D003659 4.0e-17 92.0 184 38.0
BolC5t29539H Brassica oleracea HOM05D003037 ORTHO05D003659 4.0e-17 92.0 184 38.0
AL2G18010 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 8.9e-17 90.9 183 35.5
BcaC04g22114 Brassica carinata HOM05D003037 ORTHO05D003659 8.9e-17 90.9 182 38.5
HPP92_003892 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.5e-16 90.1 184 37.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.0e-16 89.7 183 36.6
Os03g0134300 Oryza sativa ssp. japonica HOM05D003037 ORTHO05D003659 2.6e-16 89.4 146 40.4
MBI04_g26974_MAGBIO Magnolia biondii HOM05D003037 ORTHO05D003659 4.4e-16 88.6 183 36.6
Potri.019G057200 Populus trichocarpa HOM05D003037 ORTHO05D003659 1.3e-15 87.0 184 36.4
RcHm_v2.0_Chr1g0321211 Rosa chinensis HOM05D003037 ORTHO05D003659 1.7e-15 86.7 111 49.5
RcHm_v2.0_Chr1g0321241 Rosa chinensis HOM05D003037 ORTHO05D003659 1.7e-15 86.7 111 49.5
CAN.G798.49 Capsicum annuum HOM05D003037 ORTHO05D003659 2.2e-15 86.3 181 37.0
A03p66520 Brassica napus HOM05D003037 ORTHO05D003659 2.9e-15 85.9 113 48.7
C04p26910 Brassica napus HOM05D003037 ORTHO05D003659 2.9e-15 85.9 113 48.7
BraA03t15703Z Brassica rapa HOM05D003037 ORTHO05D003659 2.9e-15 85.9 113 48.7
TWI75G1787 Tripterygium wilfordii HOM05D003037 ORTHO05D003659 8.3e-15 84.3 143 43.4
BcaC06g31782 Brassica carinata HOM05D003037 ORTHO05D005835 1.4e-14 83.6 111 48.6
Sabra01G0168500 Salix brachista HOM05D003037 ORTHO05D003659 1.4e-14 83.6 184 35.9
Dinv07473 Davidia involucrata HOM05D003037 ORTHO05D003659 2.4e-14 82.8 111 47.7
TWI12G1167 Tripterygium wilfordii HOM05D003037 ORTHO05D003659 2.4e-14 82.8 144 42.4
Thecc.02G025100 Theobroma cacao HOM05D003037 ORTHO05D003659 4.1e-14 82.0 111 45.9
Lj9C300T15 Lonicera japonica HOM05D003037 ORTHO05D003659 5.4e-14 81.6 209 34.0
Potri.004G222400 Populus trichocarpa HOM05D003037 ORTHO05D003659 5.4e-14 81.6 184 36.4
SEGI_29627 Sequoiadendron giganteum HOM05D003037 ORTHO05D003659 7.1e-14 81.3 146 37.0
SMO146G0343 Selaginella moellendorffii HOM05D003037 ORTHO05D003659 1.6e-13 80.1 184 34.2
Aqoxy6G01963 Aquilegia oxysepala HOM05D003037 ORTHO05D003659 2.7e-13 79.3 74 56.8
Oeu036681.1 Olea europaea HOM05D003037 ORTHO05D003659 6.0e-13 78.2 111 45.9
Rhsim05G0031000 Rhododendron simsii HOM05D003037 ORTHO05D003659 6.0e-13 78.2 88 56.8
ATR0661G422 Amborella trichopoda HOM05D003037 ORTHO05D003659 7.8e-13 77.8 184 33.7
Pp3c18_12130 Physcomitrium patens HOM05D003037 ORTHO05D003659 2.3e-12 76.3 182 33.5
Oeu000128.2 Olea europaea HOM05D003037 ORTHO05D003659 3.0e-12 75.9 74 55.4
Pp3c22_160 Physcomitrium patens HOM05D003037 ORTHO05D003659 3.0e-12 75.9 182 33.0
Psat1g223400 Pisum sativum HOM05D003037 ORTHO05D003659 5.1e-12 75.1 111 43.2
CDE05G2487 Ceratophyllum demersum HOM05D003037 ORTHO05D003659 2.5e-11 72.8 77 57.1
Mapoly0157s0018 Marchantia polymorpha HOM05D003037 ORTHO05D003659 3.3e-11 72.4 183 31.7
MCO01G429 Micromonas commoda HOM05D003037 ORTHO05D003659 4.3e-11 72.0 141 35.5
Lsat_1_v5_gn_7_75321 Lactuca sativa HOM05D003037 ORTHO05D003659 2.1e-10 69.7 111 42.3
Zm00001eb316500 Zea mays HOM05D003037 ORTHO05D003659 2.1e-10 69.7 74 51.4
Cre09.g410650 Chlamydomonas reinhardtii HOM05D003037 ORTHO05D003659 2.8e-10 69.3 183 30.6
SEGI_05755 Sequoiadendron giganteum HOM05D003037 ORTHO05D003659 1.4e-09 67.0 136 32.4
AagrBONN_evm.TU.Sc2ySwM_368.301 Anthoceros agrestis HOM05D003037 ORTHO05D003659 3.4e-08 62.4 110 40.0
CBR_g16944 Chara braunii HOM05D003037 ORTHO05D003659 1.7e-07 60.1 148 29.1
arahy.Tifrunner.gnm1.ann1.4H8VJF Arachis hypogaea HOM05D003037 ORTHO05D003659 3.8e-07 58.9 55 56.4
CAN.G1543.8 Capsicum annuum HOM05D003037 ORTHO05D003659 3.8e-07 58.9 83 47.0
RcHm_v2.0_Chr6g0256761 Rosa chinensis HOM05D003037 ORTHO05D003659 6.4e-07 58.2 71 56.3
RcHm_v2.0_Chr6g0256771 Rosa chinensis HOM05D003037 ORTHO05D003659 6.4e-07 58.2 37 86.5
RcHm_v2.0_Chr6g0258031 Rosa chinensis HOM05D003037 ORTHO05D003659 6.4e-07 58.2 37 86.5
RcHm_v2.0_Chr6g0258041 Rosa chinensis HOM05D003037 ORTHO05D003659 6.4e-07 58.2 71 56.3
Aqoxy6G01993 Aquilegia oxysepala HOM05D003037 ORTHO05D003659 2.4e-06 56.2 155 32.9
PRCOL_00006544 Prasinoderma coloniale HOM05D003037 ORTHO05D003659 4.2e-06 55.5 180 27.2


User provided reference genes

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