Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0156001 Rosa chinensis HOM05D007442 ORTHO05D009284 3.3e-59 231.5 117 100.0
FAN05G2406 Fragaria x ananassa HOM05D007442 ORTHO05D009284 3.2e-54 214.9 118 93.2
FvH4_6g40630 Fragaria vesca HOM05D007442 ORTHO05D009284 5.5e-54 214.2 118 93.2
FAN02G0623 Fragaria x ananassa HOM05D007442 ORTHO05D009284 5.5e-54 214.2 118 93.2
FAN14G4407 Fragaria x ananassa HOM05D007442 ORTHO05D009284 5.5e-54 214.2 118 93.2
FAN09G1668 Fragaria x ananassa HOM05D007442 ORTHO05D009284 1.8e-52 209.1 118 91.5
Prupe.3G197600 Prunus persica HOM05D007442 ORTHO05D009284 4.7e-45 184.5 118 82.2
MD17G1116900 Malus domestica HOM05D007442 ORTHO05D009284 1.3e-42 176.4 120 80.8
GSVIVG01030083001 Vitis vinifera HOM05D007442 ORTHO05D009284 7.2e-38 160.6 119 73.9
CANSAT80G0988 Cannabis sativa HOM05D007442 ORTHO05D009284 1.2e-37 159.8 119 73.9
Actinidia35204 Actinidia chinensis HOM05D007442 ORTHO05D009284 1.6e-37 159.5 119 68.9
Potri.014G167300 Populus trichocarpa HOM05D007442 ORTHO05D009284 4.7e-37 157.9 119 73.1
QL04p068504 Quercus lobata HOM05D007442 ORTHO05D009284 8.0e-37 157.1 118 72.0
Dinv21296 Davidia involucrata HOM05D007442 ORTHO05D009284 1.4e-36 156.4 120 74.2
ClCG02G009230 Citrullus lanatus HOM05D007442 ORTHO05D009284 2.0e-35 152.5 123 69.1
Dinv26606 Davidia involucrata HOM05D007442 ORTHO05D009284 2.0e-35 152.5 119 71.4
arahy.Tifrunner.gnm1.ann1.8YE7LP Arachis hypogaea HOM05D007442 ORTHO05D009284 7.5e-35 150.6 123 69.1
arahy.Tifrunner.gnm1.ann1.C8HW3T Arachis hypogaea HOM05D007442 ORTHO05D009284 7.5e-35 150.6 123 69.1
Glyma.02G308900 Glycine max HOM05D007442 ORTHO05D009284 2.2e-34 149.1 121 69.4
Manes.12G065601 Manihot esculenta HOM05D007442 ORTHO05D009284 2.8e-34 148.7 118 70.3
CiPaw.03G281600 Carya illinoinensis HOM05D007442 ORTHO05D009284 4.9e-34 147.9 110 72.7
Phvul.008G289000 Phaseolus vulgaris HOM05D007442 ORTHO05D009284 6.3e-34 147.5 121 68.6
Sabra14G0127300 Salix brachista HOM05D007442 ORTHO05D009284 6.3e-34 147.5 120 67.5
Gohir.D07G198200 Gossypium hirsutum HOM05D007442 ORTHO05D009284 8.3e-34 147.1 120 69.2
Gorai.001G221800 Gossypium raimondii HOM05D007442 ORTHO05D009284 8.3e-34 147.1 120 69.2
CsaV3_6G009590 Cucumis sativus L. HOM05D007442 ORTHO05D009284 1.4e-33 146.4 125 68.0
Cc00_g11580 Coffea canephora HOM05D007442 ORTHO05D009284 1.8e-33 146.0 117 67.5
Lj8A135T99 Lonicera japonica HOM05D007442 ORTHO05D009284 1.8e-33 146.0 92 78.3
TWI36G1704 Tripterygium wilfordii HOM05D007442 ORTHO05D009284 1.8e-33 146.0 118 69.5
Gohir.A07G191900 Gossypium hirsutum HOM05D007442 ORTHO05D009284 2.4e-33 145.6 120 68.3
Sed0005163 Sechium edule HOM05D007442 ORTHO05D009284 2.4e-33 145.6 126 65.9
Cfa014227 Carpinus fangiana HOM05D007442 ORTHO05D009284 3.1e-33 145.2 118 66.1
Nitab4.5_0002154g0020 Nicotiana tabacum HOM05D007442 ORTHO05D009284 4.1e-33 144.8 111 69.4
Peaxi162Scf00147g01918 Petunia axillaris HOM05D007442 ORTHO05D009284 4.1e-33 144.8 89 78.7
VMungo0647G0872 Vigna mungo HOM05D007442 ORTHO05D009284 4.1e-33 144.8 121 66.9
Nitab4.5_0000006g0670 Nicotiana tabacum HOM05D007442 ORTHO05D009284 5.4e-33 144.4 111 68.5
Sed0010901 Sechium edule HOM05D007442 ORTHO05D009284 7.0e-33 144.1 118 68.6
Medtr5g098530 Medicago truncatula HOM05D007442 ORTHO05D009284 9.2e-33 143.7 116 69.8
Lsat_1_v5_gn_7_96821 Lactuca sativa HOM05D007442 ORTHO05D009284 1.6e-32 142.9 125 65.6
PGSC0003DMG400018833 Solanum tuberosum HOM05D007442 ORTHO05D009284 1.6e-32 142.9 90 78.9
Thecc.01G195900 Theobroma cacao HOM05D007442 ORTHO05D009284 2.7e-32 142.1 120 66.7
LjContig00081g0000923 Lotus japonicus HOM05D007442 ORTHO05D009284 3.5e-32 141.7 121 67.8
PGR083G2291 Punica granatum HOM05D007442 ORTHO05D009284 3.5e-32 141.7 90 80.0
THA.LOC104826628 Tarenaya hassleriana HOM05D007442 ORTHO05D009284 4.5e-32 141.4 96 77.1
SGA_v2.0_scaffold49G18406 Striga asiatica HOM05D007442 ORTHO05D009284 5.9e-32 141.0 126 62.7
Oeu064352.1 Olea europaea HOM05D007442 ORTHO05D009284 7.8e-32 140.6 125 64.8
CSS0032520 Camellia sinensis var. sinensis HOM05D007442 ORTHO05D009284 1.3e-31 139.8 119 63.9
Solyc05g024430.3 Solanum lycopersicum HOM05D007442 ORTHO05D009284 1.3e-31 139.8 92 76.1
Haze_12630 Corylus avellana HOM05D007442 ORTHO05D009284 1.7e-31 139.4 114 66.7
TPR.G35906 Trifolium pratense HOM05D007442 ORTHO05D009284 2.9e-31 138.7 118 65.3
TWI18G1416 Tripterygium wilfordii HOM05D007442 ORTHO05D009284 2.9e-31 138.7 98 73.5
Nn1g07499 Nelumbo nucifera HOM05D007442 ORTHO05D009284 3.8e-31 138.3 114 67.5
Sopen05g019430 Solanum pennellii HOM05D007442 ORTHO05D009284 3.8e-31 138.3 92 75.0
MSTRG.12248 Avicennia marina HOM05D007442 ORTHO05D009284 5.0e-31 137.9 88 77.3
Eucgr.H00878 Eucalyptus grandis HOM05D007442 ORTHO05D009284 5.0e-31 137.9 83 80.7
DCAR_021093 Daucus carota HOM05D007442 ORTHO05D009284 8.6e-31 137.1 119 63.0
EL10Ac9g22680 Beta vulgaris HOM05D007442 ORTHO05D009284 1.5e-30 136.3 115 62.6
Duzib138G0628 Durio zibethinus HOM05D007442 ORTHO05D009284 1.5e-30 136.3 120 64.2
Carub.0003s2673 Capsella rubella HOM05D007442 ORTHO05D009284 1.9e-30 136.0 82 81.7
Sc06g0009910 Simmondsia chinensis HOM05D007442 ORTHO05D009284 1.9e-30 136.0 120 63.3
BcaB06g26827 Brassica carinata HOM05D007442 ORTHO05D009284 2.5e-30 135.6 79 83.5
Thhalv10002726m.g Eutrema salsugineum HOM05D007442 ORTHO05D009284 3.3e-30 135.2 108 68.5
BcaC06g35915 Brassica carinata HOM05D007442 ORTHO05D009284 4.3e-30 134.8 79 83.5
BolC7t41415H Brassica oleracea HOM05D007442 ORTHO05D009284 4.3e-30 134.8 79 83.5
Sp3g23760 Schrenkiella parvula HOM05D007442 ORTHO05D009284 4.3e-30 134.8 108 66.7
HanXRQChr11g0329011 Helianthus annuus HOM05D007442 ORTHO05D009284 5.6e-30 134.4 116 64.7
AL3G42820 Arabidopsis lyrata HOM05D007442 ORTHO05D009284 7.3e-30 134.0 108 66.7
AT4G13500 Arabidopsis thaliana HOM05D007442 ORTHO05D009284 9.5e-30 133.7 79 82.3
C05p43360 Brassica napus HOM05D007442 ORTHO05D009284 9.5e-30 133.7 108 66.7
Ciclev10017197m.g Citrus clementina HOM05D007442 ORTHO05D009284 9.5e-30 133.7 123 58.5
PSO302G0215 Papaver somniferum HOM05D007442 ORTHO05D009284 1.2e-29 133.3 120 64.2
MD09G1126600 Malus domestica HOM05D007442 ORTHO05D009284 1.6e-29 132.9 74 89.2
Duzib211G0040 Durio zibethinus HOM05D007442 ORTHO05D009284 2.1e-29 132.5 124 60.5
BraA07t28440Z Brassica rapa HOM05D007442 ORTHO05D009284 2.8e-29 132.1 125 61.6
C07p09770 Brassica napus HOM05D007442 ORTHO05D009284 6.1e-29 131.0 79 82.3
Os03g0595300 Oryza sativa ssp. japonica HOM05D007442 ORTHO05D009284 8.0e-29 130.6 78 82.1
PSO210G6456 Papaver somniferum HOM05D007442 ORTHO05D009284 1.0e-28 130.2 120 63.3
Zm00001eb049770 Zea mays HOM05D007442 ORTHO05D009284 1.4e-28 129.8 77 81.8
ECA236G2600 Erigeron canadensis HOM05D007442 ORTHO05D009284 2.3e-28 129.0 125 58.4
Aa31LG5G16680 Aethionema arabicum HOM05D001040 ORTHO05D002795 3.0e-28 128.6 106 65.1
Psat2g002440 Pisum sativum HOM05D007442 ORTHO05D009284 8.9e-28 127.1 73 86.3
Atru.BG.34.p Acer truncatum HOM05D007442 ORTHO05D009284 2.0e-27 125.9 69 87.0
unitig_62.g23255 Utricularia gibba HOM05D007442 ORTHO05D009284 2.0e-27 125.9 107 63.6
TAR629G1602 Trochodendron aralioides HOM05D007442 ORTHO05D009284 4.4e-27 124.8 67 89.6
Migut.H01284 Erythranthe guttata HOM05D007442 ORTHO05D009284 1.3e-26 123.2 127 57.5
Lalb_Chr04g0247091 Lupinus albus HOM05D007442 ORTHO05D009284 8.3e-26 120.6 98 63.3
Glyma.14G004000 Glycine max HOM05D007442 ORTHO05D009284 1.1e-25 120.2 121 59.5
SEGI_21691 Sequoiadendron giganteum HOM05D007442 ORTHO05D009284 9.2e-25 117.1 76 75.0
CDE04G1945 Ceratophyllum demersum HOM05D007442 ORTHO05D009284 4.6e-24 114.8 71 78.9
vmacro09481 Vaccinium macrocarpon HOM05D007442 ORTHO05D009284 1.3e-23 113.2 168 44.0
Mapoly0072s0101 Marchantia polymorpha HOM05D007442 ORTHO05D009284 3.3e-22 108.6 125 48.0
SMO364G0127 Selaginella moellendorffii HOM05D007442 ORTHO05D009284 4.7e-21 104.8 70 67.1
MBI16_g07768_MAGBIO Magnolia biondii HOM05D007442 ORTHO05D009284 1.2e-19 100.1 48 95.8
CARHR103090 Cardamine hirsuta HOM05D007442 ORTHO05D009284 2.6e-19 99.0 49 91.8
Rhsim04G0028000 Rhododendron simsii HOM05D000264 ORTHO05D009284 1.4e-17 93.2 96 55.2
Pp3c21_15030 Physcomitrium patens HOM05D007442 ORTHO05D009284 6.0e-16 87.8 81 53.1
AagrBONN_evm.TU.Sc2ySwM_368.44 Anthoceros agrestis HOM05D007442 ORTHO05D009284 1.5e-14 83.2 92 48.9
Cre03.g151200 Chlamydomonas reinhardtii HOM05D007442 ORTHO05D009284 4.4e-11 71.6 89 42.7


User provided reference genes

Program Settings