Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0155871 Rosa chinensis HOM05D003293 ORTHO05D013446 1.6e-100 369.4 187 100.0
RcHm_v2.0_Chr4g0401281 Rosa chinensis HOM05D003293 ORTHO05D013446 3.8e-97 358.2 185 98.4
RcHm_v2.0_Chr7g0231801 Rosa chinensis HOM05D003293 ORTHO05D013446 4.9e-97 357.8 185 97.8
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 9.0e-91 337.0 185 91.9
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.8e-86 322.8 185 87.6
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 5.1e-86 321.2 185 87.0
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 5.1e-86 321.2 185 87.0
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 5.1e-86 321.2 185 87.0
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 6.3e-84 314.3 186 84.9
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 3.8e-81 305.1 185 81.6
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 8.5e-81 303.9 185 81.6
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 2.5e-80 302.4 181 82.3
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 7.9e-79 297.4 185 79.5
RcHm_v2.0_Chr3g0468611 Rosa chinensis HOM05D003293 ORTHO05D013446 9.1e-75 283.9 188 82.4
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 3.8e-73 278.5 185 81.6
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 1.6e-71 273.1 186 79.0
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 1.4e-70 270.0 185 78.9
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 1.8e-70 269.6 186 78.5
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 2.3e-70 269.2 187 78.6
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 1.5e-69 266.5 185 78.4
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 2.0e-66 256.1 186 71.5
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 7.2e-64 247.7 186 68.8
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 9.4e-64 247.3 186 68.8
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 2.1e-63 246.1 182 69.8
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 2.1e-63 246.1 184 67.9
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 2.1e-63 246.1 186 68.8
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 6.1e-63 244.6 181 65.2
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 1.0e-62 243.8 181 66.3
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 1.0e-62 243.8 189 64.0
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 1.4e-62 243.4 189 65.1
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 1.8e-62 243.0 182 68.7
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.8e-62 243.0 189 65.6
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 3.0e-62 242.3 185 67.6
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 3.0e-62 242.3 185 63.2
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 5.2e-62 241.5 189 65.1
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 5.2e-62 241.5 184 66.8
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 6.7e-62 241.1 189 65.1
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 6.7e-62 241.1 175 66.9
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 6.7e-62 241.1 189 65.1
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 6.7e-62 241.1 186 63.4
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 6.7e-62 241.1 186 66.1
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 1.1e-61 240.4 182 67.0
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.1e-61 240.4 186 66.7
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 2.0e-61 239.6 189 64.6
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 2.0e-61 239.6 181 65.7
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 2.0e-61 239.6 181 65.7
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 2.6e-61 239.2 189 64.6
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 2.6e-61 239.2 189 64.6
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 3.3e-61 238.8 189 63.5
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 4.4e-61 238.4 182 66.5
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 5.7e-61 238.0 189 64.0
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 7.5e-61 237.7 189 64.0
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 9.7e-61 237.3 189 64.6
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 9.7e-61 237.3 182 65.9
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 6.3e-60 234.6 186 64.5
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 8.2e-60 234.2 189 61.9
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 8.2e-60 234.2 189 63.0
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 8.2e-60 234.2 185 65.4
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 1.1e-59 233.8 195 61.5
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 1.4e-59 233.4 184 64.7
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 1.4e-59 233.4 184 64.7
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 1.4e-59 233.4 184 64.7
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 1.4e-59 233.4 184 64.7
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 1.8e-59 233.0 184 64.1
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.8e-59 233.0 184 64.1
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 1.8e-59 233.0 182 62.6
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 2.4e-59 232.6 189 63.0
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 2.4e-59 232.6 176 65.3
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 2.4e-59 232.6 174 65.5
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 4.1e-59 231.9 176 64.2
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 4.1e-59 231.9 176 67.6
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 7.0e-59 231.1 189 60.8
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 9.1e-59 230.7 182 64.8
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.2e-58 230.3 185 64.9
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.6e-58 229.9 183 63.4
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 2.0e-58 229.6 182 64.3
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 3.8e-57 225.3 182 64.3
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 5.0e-57 224.9 191 61.3
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.1e-56 223.8 187 62.0
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 1.9e-56 223.0 183 65.0
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 3.2e-56 222.2 183 64.5
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 9.4e-56 220.7 186 60.8
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 9.4e-56 220.7 186 60.8
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 1.2e-55 220.3 186 60.2
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.6e-55 219.9 186 60.2
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 2.1e-55 219.5 186 60.2
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 2.1e-55 219.5 186 60.2
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 3.6e-55 218.8 186 60.2
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 4.7e-55 218.4 182 60.4
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 1.0e-54 217.2 186 59.7
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 3.0e-54 215.7 187 61.0
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 3.0e-54 215.7 191 62.3
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 4.0e-54 215.3 183 63.9
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 4.0e-54 215.3 185 61.1
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 5.2e-54 214.9 183 63.9
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 5.2e-54 214.9 185 60.0
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.2e-53 213.8 183 62.8
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 1.2e-53 213.8 192 58.3
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 1.2e-53 213.8 185 60.5
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 2.0e-53 213.0 183 61.7
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 4.4e-53 211.8 185 60.0
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 7.5e-53 211.1 181 61.3
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 1.3e-52 210.3 184 62.0
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.7e-52 209.9 183 61.7
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 2.2e-52 209.5 181 61.9
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 2.8e-52 209.1 183 59.6
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 3.7e-52 208.8 181 62.4
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 4.8e-52 208.4 182 61.5
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 4.8e-52 208.4 187 59.4
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 6.3e-52 208.0 183 62.3
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 6.3e-52 208.0 185 61.1
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.4e-51 206.8 185 60.5
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.4e-51 206.8 185 60.5
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.4e-51 206.8 185 60.5
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.8e-51 206.5 187 60.4
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 5.4e-51 204.9 186 59.1
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 1.6e-50 203.4 182 61.0
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 1.6e-50 203.4 186 58.6
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 2.7e-50 202.6 181 59.1
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 5.9e-50 201.4 186 58.6
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 7.7e-50 201.1 183 59.0
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 1.3e-49 200.3 183 57.4
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 1.3e-49 200.3 147 70.1
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 2.2e-49 199.5 183 57.4
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 2.2e-49 199.5 183 59.0
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 3.8e-49 198.7 150 66.7
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 5.0e-49 198.4 162 64.8
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 8.5e-49 197.6 184 60.3
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 1.1e-48 197.2 182 59.3
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.5e-48 196.1 189 55.0
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 2.5e-48 196.1 159 64.2
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 5.5e-48 194.9 159 61.0
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 9.4e-48 194.1 194 56.2
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 3.6e-47 192.2 180 58.9
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 8.0e-47 191.0 156 61.5
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 1.0e-46 190.7 154 62.3
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 1.0e-46 190.7 154 62.3
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 1.4e-46 190.3 185 54.6
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 4.0e-46 188.7 182 56.0
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 5.2e-46 188.3 131 73.3
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 1.2e-45 187.2 182 55.5
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 2.6e-45 186.0 182 55.5
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 1.7e-44 183.3 182 54.9
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 2.2e-44 183.0 184 56.0
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 2.9e-41 172.6 189 52.9
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.9e-41 172.6 161 57.8
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 5.0e-41 171.8 175 53.7
RcHm_v2.0_Chr2g0110561 Rosa chinensis HOM05D003293 ORTHO05D013446 1.6e-39 166.8 184 53.3
RcHm_v2.0_Chr6g0267731 Rosa chinensis HOM05D003293 ORTHO05D013446 3.6e-39 165.6 185 53.0
RcHm_v2.0_Chr4g0408151 Rosa chinensis HOM05D003293 ORTHO05D013446 4.7e-39 165.2 187 52.9
RcHm_v2.0_Chr5g0022661 Rosa chinensis HOM05D003293 ORTHO05D013446 1.8e-38 163.3 185 52.4
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 6.8e-38 161.4 187 48.1
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 1.2e-37 160.6 146 58.2
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 1.5e-37 160.2 167 51.5
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 1.5e-37 160.2 187 47.6
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 7.5e-37 157.9 130 61.5
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 7.5e-37 157.9 130 61.5
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 8.3e-36 154.5 186 45.7
ATR0810G033 Amborella trichopoda HOM05D003293 ORTHO05D005060 9.2e-35 151.0 115 70.4
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 1.6e-34 150.2 149 54.4
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 7.8e-34 147.9 187 44.9
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 3.9e-33 145.6 107 67.3
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 1.5e-29 133.7 129 53.5
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 4.4e-29 132.1 131 52.7
arahy.Tifrunner.gnm1.ann1.K3F60Q Arachis hypogaea HOM05D003293 ORTHO05D005060 2.9e-28 129.4 150 50.7
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 1.6e-26 123.6 67 91.0
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 2.0e-26 123.2 127 50.4
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 3.5e-26 122.5 133 51.9
RcHm_v2.0_Chr5g0023571 Rosa chinensis HOM05D003293 ORTHO05D022248 5.6e-24 115.2 85 72.9
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 2.9e-20 102.8 58 87.9
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 8.6e-17 91.3 58 72.4
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 1.5e-16 90.5 58 75.9
Haze_27383 Corylus avellana HOM05D003293 ORTHO05D044783 1.1e-14 84.3 133 36.8
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 1.2e-13 80.9 55 70.9
Pp3s32_230 Physcomitrium patens HOM05D003293 ORTHO05D309919 2.0e-13 80.1 184 31.5
Aqoxy7G02401 Aquilegia oxysepala HOM05D003293 ORTHO05D013446 2.2e-12 76.6 50 70.0
BcaB02g06615 Brassica carinata HOM05D003293 ORTHO05D094743 8.4e-12 74.7 61 62.3
Gohir.D13G220550 Gossypium hirsutum HOM05D003293 ORTHO05D022137 7.1e-11 71.6 52 69.2
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 4.6e-10 68.9 52 67.3
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 3.9e-09 65.9 169 33.7
Nn2g15377 Nelumbo nucifera HOM05D003293 ORTHO05D005060 4.3e-08 62.4 44 70.5
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.1e-06 57.8 83 39.8
Rhsim01G0232100 Rhododendron simsii HOM05D003293 ORTHO05D013446 4.0e-06 55.8 28 92.9


User provided reference genes

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