Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 2.6e-138 495.4 246 100.0
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 9.4e-80 300.8 235 66.8
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.5e-72 275.0 192 69.8
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.3e-48 196.1 174 56.3
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.4e-46 190.7 212 50.9
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 5.2e-46 188.7 174 53.4
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.2e-46 188.7 174 53.4
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 1.1e-43 181.0 188 50.5
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 1.9e-43 180.3 180 51.7
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 1.6e-42 177.2 175 50.9
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.1e-42 176.8 206 48.1
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.6e-42 175.6 211 45.0
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.6e-42 175.6 211 45.0
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-41 174.1 216 44.9
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 2.5e-40 169.9 193 47.7
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.5e-40 167.9 177 50.8
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 2.1e-39 166.8 198 48.0
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.8e-36 156.0 188 42.0
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.9e-36 155.6 219 40.6
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.9e-36 155.6 188 42.0
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 2.3e-33 146.7 206 40.8
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 3.0e-33 146.4 237 37.6
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 6.6e-33 145.2 193 41.5
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 5.6e-32 142.1 170 42.4
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.6e-32 142.1 170 42.4
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 1.2e-31 141.0 184 40.8
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 2.8e-31 139.8 170 38.8
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 3.6e-31 139.4 237 36.7
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 6.2e-31 138.7 174 41.4
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 6.2e-31 138.7 165 41.8
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 1.1e-30 137.9 167 43.1
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 3.1e-30 136.3 183 41.0
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 5.2e-30 135.6 169 40.8
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 8.9e-30 134.8 170 43.5
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.5e-29 134.0 167 41.9
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 1.5e-29 134.0 172 41.9
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 2.6e-29 133.3 185 38.9
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 3.4e-29 132.9 195 40.5
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 4.4e-29 132.5 224 39.7
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 7.6e-29 131.7 201 39.3
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.3e-28 131.0 167 43.1
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 1.3e-28 131.0 169 39.6
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.3e-28 131.0 181 37.6
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.7e-28 130.6 162 37.7
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 2.2e-28 130.2 162 37.0
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 2.9e-28 129.8 167 41.9
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 3.8e-28 129.4 166 41.0
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 3.8e-28 129.4 166 41.0
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 4.9e-28 129.0 166 41.0
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 6.4e-28 128.6 162 37.0
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 8.4e-28 128.3 169 39.1
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.9e-27 127.1 166 41.6
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 3.2e-27 126.3 210 36.7
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 4.2e-27 125.9 167 38.9
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 6.0e-26 122.1 159 40.9
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 7.8e-26 121.7 225 34.7
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 1.3e-25 120.9 167 35.3
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 1.3e-25 120.9 219 33.3
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 1.7e-25 120.6 172 37.2
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 5.1e-25 119.0 163 36.2
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 1.1e-24 117.9 167 38.9
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 1.5e-24 117.5 165 37.0
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.9e-24 117.1 167 38.3
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 2.5e-24 116.7 167 40.1
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.5e-24 116.7 192 30.7
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 3.3e-24 116.3 204 33.8
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 4.3e-24 115.9 169 36.7
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 9.6e-24 114.8 169 34.9
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.3e-23 114.4 158 35.4
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 1.3e-23 114.4 226 34.5
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 1.3e-23 114.4 172 32.0
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.6e-23 114.0 99 54.5
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.1e-23 113.6 165 35.8
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 2.1e-23 113.6 182 34.6
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.8e-23 113.2 172 32.0
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 3.6e-23 112.8 166 36.7
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 3.6e-23 112.8 167 38.9
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 3.6e-23 112.8 207 30.9
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 3.6e-23 112.8 169 33.7
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 4.8e-23 112.5 186 38.2
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 6.2e-23 112.1 167 39.5
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 8.1e-23 111.7 169 34.3
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 8.1e-23 111.7 180 36.7
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.1e-22 111.3 233 31.8
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.4e-22 110.9 173 34.1
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.4e-22 110.2 180 36.1
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 2.4e-22 110.2 233 30.0
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 2.4e-22 110.2 162 38.9
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 4.0e-22 109.4 169 34.3
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 4.0e-22 109.4 169 33.7
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 5.3e-22 109.0 165 34.5
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 5.3e-22 109.0 104 50.0
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 6.9e-22 108.6 168 34.5
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 9.0e-22 108.2 167 33.5
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 9.0e-22 108.2 172 32.6
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.2e-21 107.8 165 34.5
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.5e-21 107.5 167 32.9
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.5e-21 107.5 168 35.1
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 2.0e-21 107.1 167 36.5
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 2.0e-21 107.1 167 31.7
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 2.6e-21 106.7 168 32.7
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 2.6e-21 106.7 168 32.7
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 4.5e-21 105.9 166 36.7
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 4.5e-21 105.9 169 32.5
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 4.5e-21 105.9 201 35.3
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.2e-20 103.6 184 34.2
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 2.9e-20 103.2 167 34.7
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 3.8e-20 102.8 166 33.7
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 1.4e-19 100.9 172 35.5
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 4.2e-19 99.4 169 34.3
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 7.1e-19 98.6 167 34.7
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 9.3e-19 98.2 167 34.1
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 9.3e-19 98.2 167 34.1
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 9.3e-19 98.2 167 34.7
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 9.3e-19 98.2 164 37.8
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 1.6e-18 97.4 167 34.7
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 2.1e-18 97.1 165 32.7
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 2.7e-18 96.7 167 34.1
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.7e-18 96.7 174 38.5
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 2.7e-18 96.7 144 33.3
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 4.6e-18 95.9 171 35.7
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 4.6e-18 95.9 174 33.3
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 6.0e-18 95.5 167 34.7
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.8e-17 94.0 129 38.0
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 1.8e-17 94.0 144 33.3
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.8e-17 94.0 97 42.3
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 2.3e-17 93.6 218 28.0
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.3e-17 93.6 96 44.8
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 3.0e-17 93.2 167 33.5
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 3.9e-17 92.8 224 31.2
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 3.9e-17 92.8 177 35.0
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 6.7e-17 92.0 122 38.5
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.9e-16 90.5 173 28.9
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 2.5e-16 90.1 168 29.2
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 4.3e-16 89.4 170 30.6
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 4.3e-16 89.4 183 27.9
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 9.6e-16 88.2 165 27.3
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 1.6e-15 87.4 148 36.5
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 1.6e-15 87.4 167 32.9
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 2.1e-15 87.0 168 32.7
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 4.8e-15 85.9 166 32.5
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 1.1e-14 84.7 159 32.7
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 4.0e-14 82.8 168 32.7
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 4.0e-14 82.8 186 32.3
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 2.6e-13 80.1 139 35.3
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 3.4e-13 79.7 127 36.2
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 5.8e-13 79.0 159 31.4
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 9.9e-13 78.2 101 39.6
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 2.9e-12 76.6 104 38.5
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 3.8e-12 76.3 97 41.2
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 3.8e-12 76.3 100 37.0
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 1.2e-10 71.2 121 30.6
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 6.0e-10 68.9 98 37.8
Sabra18G0045200 Salix brachista HOM05D001613 ORTHO05D001556 2.3e-09 67.0 146 29.5
MD09G1128900 Malus domestica HOM05D003575 ORTHO05D003587 3.0e-09 66.6 115 38.3
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 1.5e-08 64.3 99 36.4
Gorai.010G105400 Gossypium raimondii HOM05D001613 ORTHO05D001556 1.9e-08 63.9 141 29.1
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 1.9e-08 63.9 123 33.3
Pp3c24_6860 Physcomitrium patens HOM05D003575 ORTHO05D003587 1.9e-08 63.9 155 28.4
Manes.16G074000 Manihot esculenta HOM05D001613 ORTHO05D001556 7.4e-08 62.0 146 26.7
Actinidia39137 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.3e-07 61.2 146 29.5
Gohir.D06G091400 Gossypium hirsutum HOM05D001613 ORTHO05D001556 1.6e-07 60.8 133 30.1
Actinidia09005 Actinidia chinensis HOM05D001613 ORTHO05D001556 6.2e-07 58.9 146 28.1
MSTRG.14027 Avicennia marina HOM05D001613 ORTHO05D001556 1.4e-06 57.8 144 25.7
EL10Ac9g21216 Beta vulgaris HOM05D001613 ORTHO05D001556 2.4e-06 57.0 146 27.4
FvH4_2g35340 Fragaria vesca HOM05D001613 ORTHO05D001556 2.4e-06 57.0 147 26.5
FAN15G0337 Fragaria x ananassa HOM05D001613 ORTHO05D001556 2.4e-06 57.0 147 26.5
RcHm_v2.0_Chr6g0306581 Rosa chinensis HOM05D001613 ORTHO05D001556 2.4e-06 57.0 147 26.5
Ciclev10009238m.g Citrus clementina HOM05D001613 ORTHO05D001556 3.1e-06 56.6 148 29.1
HPP92_009869 Vanilla planifolia HOM05D001613 ORTHO05D001556 4.0e-06 56.2 131 26.7
FAN20G0144 Fragaria x ananassa HOM05D001613 ORTHO05D001556 5.3e-06 55.8 149 28.9
Prupe.1G445500 Prunus persica HOM05D001613 ORTHO05D001556 5.3e-06 55.8 147 26.5
Eucgr.F03070 Eucalyptus grandis HOM05D001613 ORTHO05D001556 6.9e-06 55.5 147 25.2
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 9.0e-06 55.1 74 37.8


User provided reference genes

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