Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 1.4e-84 316.2 163 100.0
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.8e-72 275.4 163 86.5
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.4e-71 273.1 163 85.3
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 2.4e-71 272.3 163 85.3
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.4e-71 272.3 163 85.3
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 7.2e-52 207.6 159 66.7
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.2e-52 207.6 159 66.7
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.2e-52 207.6 159 66.7
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 5.2e-50 201.4 156 66.7
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 3.5e-46 188.7 158 62.0
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 7.2e-44 181.0 158 57.0
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.4e-41 171.8 155 60.0
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.7e-40 169.9 156 60.3
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 8.3e-40 167.5 155 60.0
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.3e-40 167.5 155 60.0
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 5.3e-39 164.9 158 56.3
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.2e-37 159.5 155 52.9
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.8e-37 158.7 155 52.9
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 8.5e-37 157.5 157 56.7
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.5e-36 156.0 155 52.3
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 4.2e-36 155.2 96 81.2
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-35 153.7 157 55.4
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.7e-35 152.5 96 81.2
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 4.0e-34 148.7 155 49.7
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 1.5e-33 146.7 155 49.7
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 4.4e-33 145.2 155 48.4
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.7e-32 143.3 159 46.5
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 5.4e-31 138.3 176 44.9
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 9.1e-31 137.5 155 51.0
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.2e-30 137.1 155 50.3
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.2e-30 137.1 155 50.3
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 3.5e-30 135.6 160 45.6
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.5e-30 135.6 155 45.2
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 7.7e-30 134.4 155 45.8
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 8.6e-29 131.0 150 44.7
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 8.6e-29 131.0 152 45.4
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 1.1e-28 130.6 153 40.5
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.5e-28 130.2 137 49.6
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 1.5e-28 130.2 155 45.8
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.3e-28 129.0 154 44.2
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 4.2e-28 128.6 154 44.2
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 5.5e-28 128.3 155 43.2
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 7.2e-28 127.9 159 43.4
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 7.2e-28 127.9 153 43.1
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 9.5e-28 127.5 153 42.5
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 1.2e-27 127.1 153 39.9
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 2.1e-27 126.3 155 43.9
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 2.8e-27 125.9 154 44.8
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 4.7e-27 125.2 153 42.5
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 6.1e-27 124.8 154 43.5
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 6.1e-27 124.8 156 39.7
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 1.8e-26 123.2 156 41.0
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 1.8e-26 123.2 153 41.8
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.0e-26 122.5 156 42.9
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 2.0e-25 119.8 161 44.1
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.6e-25 119.4 151 41.7
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 3.4e-25 119.0 155 41.9
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 4.4e-25 118.6 152 41.4
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 4.4e-25 118.6 154 40.9
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 5.7e-25 118.2 155 41.9
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 9.8e-25 117.5 154 40.3
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 9.8e-25 117.5 155 41.9
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 1.3e-24 117.1 159 39.6
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 1.3e-24 117.1 152 40.8
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 1.7e-24 116.7 157 40.8
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 2.2e-24 116.3 153 42.5
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 3.7e-24 115.5 155 43.9
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 1.1e-23 114.0 160 43.1
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.8e-23 113.2 98 60.2
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 3.2e-23 112.5 153 41.2
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 3.2e-23 112.5 153 38.6
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 3.2e-23 112.5 156 35.9
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.1e-23 112.1 94 60.6
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 4.1e-23 112.1 151 39.1
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 5.4e-23 111.7 153 39.9
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 7.0e-23 111.3 153 40.5
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 9.2e-23 110.9 153 37.3
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 1.6e-22 110.2 155 41.9
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 2.7e-22 109.4 153 37.9
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 2.7e-22 109.4 153 37.9
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.7e-22 109.4 160 35.6
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 3.5e-22 109.0 148 39.9
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 3.5e-22 109.0 155 38.7
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 3.5e-22 109.0 153 37.3
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 4.5e-22 108.6 151 41.1
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 5.9e-22 108.2 132 47.7
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 7.8e-22 107.8 154 39.0
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 7.8e-22 107.8 158 37.3
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.0e-21 107.5 150 38.0
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 1.7e-21 106.7 153 37.9
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 2.3e-21 106.3 155 39.4
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 3.9e-21 105.5 155 39.4
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 6.6e-21 104.8 155 36.1
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 6.6e-21 104.8 155 42.6
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 8.6e-21 104.4 152 41.4
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.9e-20 103.2 153 35.9
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.5e-20 102.8 153 35.9
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.5e-20 102.8 153 36.6
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 5.6e-20 101.7 154 37.7
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 5.6e-20 101.7 153 39.9
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 9.5e-20 100.9 154 38.3
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 2.8e-19 99.4 153 39.9
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 4.7e-19 98.6 76 63.2
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 4.7e-19 98.6 76 63.2
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 6.1e-19 98.2 98 45.9
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 2.3e-18 96.3 153 37.3
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 2.3e-18 96.3 153 37.3
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 4.0e-18 95.5 71 63.4
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.2e-18 95.1 84 52.4
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.5e-17 93.6 154 35.7
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 2.6e-17 92.8 160 36.9
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 2.6e-17 92.8 94 48.9
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 7.5e-17 91.3 154 34.4
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 2.2e-16 89.7 145 32.4
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.9e-16 89.4 79 51.9
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 2.4e-15 86.3 152 33.6
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 5.4e-15 85.1 115 40.0
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 7.0e-15 84.7 156 33.3
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 8.6e-13 77.8 79 45.6
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.5e-12 77.0 85 44.7
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 4.3e-12 75.5 140 30.0
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 2.3e-10 69.7 72 45.8
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 5.2e-10 68.6 71 46.5
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 1.5e-09 67.0 72 41.7
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 2.0e-09 66.6 78 46.2
Lalb_Chr14g0362571 Lupinus albus HOM05D003575 ORTHO05D003587 2.6e-09 66.2 86 44.2
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 9.8e-09 64.3 120 32.5
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.7e-08 63.5 71 43.7
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 3.2e-07 59.3 71 38.0
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 4.1e-07 58.9 74 39.2
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 3.5e-06 55.8 71 39.4


User provided reference genes

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