Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0155351 Rosa chinensis HOM05D000832 ORTHO05D015072 2.6e-29 131.3 64 100.0
RcHm_v2.0_Chr1g0355571 Rosa chinensis HOM05D000832 ORTHO05D015072 3.3e-24 114.4 56 98.2
RcHm_v2.0_Chr5g0063711 Rosa chinensis HOM05D000832 ORTHO05D015072 3.3e-24 114.4 56 98.2
RcHm_v2.0_Chr1g0330341 Rosa chinensis HOM05D000832 ORTHO05D015072 3.6e-23 110.9 56 94.6
RcHm_v2.0_Chr6g0312321 Rosa chinensis HOM05D000832 ORTHO05D015072 1.5e-21 105.5 56 91.1
RcHm_v2.0_Chr5g0035671 Rosa chinensis HOM05D000832 ORTHO05D015072 4.9e-20 100.5 56 87.5
RcHm_v2.0_Chr1g0379921 Rosa chinensis HOM05D000832 ORTHO05D000982 2.7e-18 94.7 49 93.9
RcHm_v2.0_Chr5g0035851 Rosa chinensis HOM05D000832 ORTHO05D015072 5.6e-16 87.0 49 89.8
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 1.0e-14 82.8 46 91.3
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 2.0e-13 78.6 48 81.2
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 2.0e-13 78.6 51 78.4
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.0e-13 78.6 51 78.4
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.0e-13 78.6 51 78.4
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.0e-13 78.6 51 78.4
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 4.4e-13 77.4 46 80.4
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 4.4e-13 77.4 46 82.6
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 4.4e-13 77.4 46 82.6
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 4.4e-13 77.4 46 82.6
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 5.8e-13 77.0 46 82.6
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 5.8e-13 77.0 48 79.2
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 7.5e-13 76.6 46 80.4
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 7.5e-13 76.6 51 76.5
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 7.5e-13 76.6 48 77.1
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 7.5e-13 76.6 48 79.2
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 9.8e-13 76.3 46 80.4
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 9.8e-13 76.3 48 79.2
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 9.8e-13 76.3 50 74.0
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 9.8e-13 76.3 50 74.0
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 1.3e-12 75.9 46 78.3
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 1.3e-12 75.9 46 78.3
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 1.3e-12 75.9 46 78.3
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 1.3e-12 75.9 51 72.5
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 1.3e-12 75.9 46 80.4
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 1.3e-12 75.9 46 82.6
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 1.3e-12 75.9 46 80.4
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 1.7e-12 75.5 50 72.0
BcaC05g26647 Brassica carinata HOM05D000832 ORTHO05D000982 1.7e-12 75.5 50 72.0
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
BcaC08g43157 Brassica carinata HOM05D000832 ORTHO05D000982 2.2e-12 75.1 58 65.5
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 80.4
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 78.3
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 2.2e-12 75.1 46 80.4
Cpa.g.sc1.236 Carica papaya HOM05D000832 ORTHO05D000982 2.9e-12 74.7 46 78.3
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 2.9e-12 74.7 48 77.1
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 2.9e-12 74.7 46 78.3
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 2.9e-12 74.7 50 72.0
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 2.9e-12 74.7 50 70.0
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 2.9e-12 74.7 46 78.3
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 3.7e-12 74.3 46 78.3
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 3.7e-12 74.3 46 78.3
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 3.7e-12 74.3 46 80.4
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 3.7e-12 74.3 46 78.3
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 3.7e-12 74.3 48 75.0
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 3.7e-12 74.3 46 78.3
Glyma.02G117816 Glycine max HOM05D000832 ORTHO05D015072 4.9e-12 73.9 46 78.3
Glyma.02G118132 Glycine max HOM05D000832 ORTHO05D015072 4.9e-12 73.9 46 78.3
Glyma.02G130832 Glycine max HOM05D000832 ORTHO05D015072 4.9e-12 73.9 46 78.3
Glyma.02G130880 Glycine max HOM05D000832 ORTHO05D015072 4.9e-12 73.9 46 78.3
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 4.9e-12 73.9 48 75.0
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 4.9e-12 73.9 50 70.0
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 4.9e-12 73.9 50 70.0
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 4.9e-12 73.9 48 75.0
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 6.4e-12 73.6 46 76.1
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 6.4e-12 73.6 46 76.1
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 6.4e-12 73.6 46 76.1
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 6.4e-12 73.6 47 78.7
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 8.3e-12 73.2 46 76.1
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 8.3e-12 73.2 46 78.3
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 8.3e-12 73.2 46 76.1
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 8.3e-12 73.2 46 73.9
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 1.1e-11 72.8 46 73.9
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 1.1e-11 72.8 46 78.3
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 1.1e-11 72.8 55 65.5
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 1.1e-11 72.8 55 65.5
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 1.1e-11 72.8 46 76.1
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 1.1e-11 72.8 46 76.1
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 1.4e-11 72.4 46 73.9
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 1.4e-11 72.4 46 78.3
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 1.9e-11 72.0 46 76.1
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 1.9e-11 72.0 46 76.1
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 2.4e-11 71.6 46 73.9
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 2.4e-11 71.6 46 73.9
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 2.4e-11 71.6 45 77.8
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 2.4e-11 71.6 46 73.9
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 2.4e-11 71.6 55 65.5
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 2.4e-11 71.6 45 77.8
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 3.2e-11 71.2 45 75.6
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 4.1e-11 70.9 46 71.7
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 4.1e-11 70.9 46 71.7
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 4.1e-11 70.9 45 75.6
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 4.1e-11 70.9 46 76.1
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 5.4e-11 70.5 46 76.1
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 5.4e-11 70.5 46 73.9
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 5.4e-11 70.5 46 76.1
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 5.4e-11 70.5 46 73.9
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 5.4e-11 70.5 45 75.6
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 7.0e-11 70.1 46 71.7
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 7.0e-11 70.1 46 73.9
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 7.0e-11 70.1 46 73.9
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 7.0e-11 70.1 46 73.9
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 7.0e-11 70.1 46 73.9
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 7.0e-11 70.1 46 76.1
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 7.0e-11 70.1 45 75.6
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 7.0e-11 70.1 44 77.3
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 9.2e-11 69.7 50 66.0
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 9.2e-11 69.7 46 71.7
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 9.2e-11 69.7 46 73.9
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 9.2e-11 69.7 46 73.9
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 9.2e-11 69.7 46 73.9
RcHm_v2.0_Chr4g0394861 Rosa chinensis HOM05D000832 ORTHO05D015072 9.2e-11 69.7 42 81.0
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 9.2e-11 69.7 46 73.9
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 1.2e-10 69.3 45 71.1
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 1.2e-10 69.3 46 73.9
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 1.2e-10 69.3 45 75.6
RcHm_v2.0_Chr5g0035591 Rosa chinensis HOM05D000832 ORTHO05D348372 1.2e-10 69.3 58 65.5
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 1.6e-10 68.9 46 73.9
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 1.6e-10 68.9 45 73.3
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.6e-10 68.9 46 71.7
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.6e-10 68.9 44 75.0
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 1.6e-10 68.9 45 71.1
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 2.0e-10 68.6 46 71.7
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 2.0e-10 68.6 46 71.7
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 2.0e-10 68.6 46 71.7
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 2.0e-10 68.6 46 73.9
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 2.7e-10 68.2 46 73.9
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 2.7e-10 68.2 46 71.7
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 3.5e-10 67.8 46 69.6
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 4.6e-10 67.4 45 71.1
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 4.6e-10 67.4 46 71.7
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 7.8e-10 66.6 46 69.6
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 7.8e-10 66.6 56 60.7
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 1.0e-09 66.2 45 71.1
C06p04400 Brassica napus HOM05D000832 ORTHO05D000982 1.7e-09 65.5 43 69.8
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 1.7e-09 65.5 45 68.9
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 2.3e-09 65.1 45 66.7
BolC6t35571H Brassica oleracea HOM05D000832 ORTHO05D000982 5.0e-09 63.9 43 67.4
Zm00001eb126420 Zea mays HOM05D000832 ORTHO05D000982 6.6e-09 63.5 45 64.4
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 8.6e-09 63.2 45 64.4
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 4.3e-08 60.8 47 57.4
Cre03.g171950 Chlamydomonas reinhardtii HOM05D000832 ORTHO05D000982 1.6e-07 58.9 50 52.0
AagrBONN_evm.TU.Sc2ySwM_344.1213 Anthoceros agrestis HOM05D000832 ORTHO05D000982 6.2e-07 57.0 46 56.5
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 5.2e-06 53.9 52 50.0


User provided reference genes

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