Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 1.4e-142 509.6 253 100.0
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 3.5e-122 441.8 238 91.6
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.0e-121 438.7 238 91.2
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.1e-120 436.8 238 90.8
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.3e-120 435.3 238 89.5
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 1.6e-98 363.2 238 76.1
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 6.0e-98 361.3 238 75.2
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 8.5e-84 314.3 238 69.3
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 6.7e-81 304.7 242 61.2
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 2.8e-79 299.3 244 61.1
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 4.2e-75 285.4 242 62.4
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 4.2e-75 285.4 243 57.2
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 1.2e-74 283.9 244 57.4
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 1.4e-73 280.4 244 57.0
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 3.9e-73 278.9 243 57.2
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 5.7e-72 275.0 243 56.0
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 6.3e-71 271.6 244 55.7
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 2.4e-70 269.6 244 59.0
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 5.3e-70 268.5 243 56.4
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 3.5e-69 265.8 243 56.4
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.9e-67 260.0 243 54.3
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 2.5e-67 259.6 171 76.0
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 3.2e-67 259.2 244 54.1
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 1.2e-66 257.3 246 53.3
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 3.6e-66 255.8 241 52.7
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 8.0e-66 254.6 243 52.7
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 1.8e-65 253.4 243 53.1
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 6.7e-65 251.5 241 52.3
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 2.0e-64 250.0 243 53.5
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 4.4e-64 248.8 244 50.0
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 5.7e-64 248.4 242 50.8
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 5.7e-64 248.4 243 53.9
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 1.7e-63 246.9 245 52.2
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 6.3e-63 245.0 242 50.4
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 8.2e-63 244.6 243 51.0
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 1.4e-62 243.8 243 52.7
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 3.1e-62 242.7 247 49.4
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 4.1e-62 242.3 240 53.3
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 9.1e-62 241.1 247 48.6
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 1.6e-61 240.4 241 50.6
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 1.6e-61 240.4 243 49.8
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 5.0e-60 235.3 243 47.3
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 6.5e-60 235.0 249 50.2
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 6.5e-60 235.0 242 47.9
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 4.2e-59 232.3 243 49.8
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 5.5e-59 231.9 245 49.8
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 7.2e-59 231.5 243 45.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 9.4e-59 231.1 251 50.6
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 9.4e-59 231.1 242 49.2
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 1.2e-58 230.7 243 46.1
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 1.6e-58 230.3 245 47.8
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 2.1e-58 229.9 243 46.1
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 3.6e-58 229.2 243 51.4
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 1.4e-57 227.3 242 48.3
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 1.8e-57 226.9 241 47.3
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 2.3e-57 226.5 243 44.9
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 2.3e-57 226.5 243 46.5
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 4.0e-57 225.7 243 47.3
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 4.0e-57 225.7 243 48.1
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 4.0e-57 225.7 243 47.3
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 1.2e-56 224.2 246 49.6
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 1.2e-56 224.2 242 48.3
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 1.5e-56 223.8 243 50.2
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 2.6e-56 223.0 240 47.1
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 9.8e-56 221.1 243 47.3
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 9.8e-56 221.1 243 47.3
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 3.7e-55 219.2 218 50.9
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 3.7e-55 219.2 202 55.9
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 6.3e-55 218.4 292 41.1
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 8.3e-55 218.0 266 44.0
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 2.4e-54 216.5 245 44.1
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 1.3e-52 210.7 223 47.5
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 6.5e-52 208.4 240 45.4
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 4.2e-51 205.7 240 43.8
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 9.5e-51 204.5 189 56.6
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 3.0e-49 199.5 169 59.8
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 4.0e-49 199.1 240 44.6
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 2.2e-47 193.4 241 42.7
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 2.8e-47 193.0 201 50.2
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 2.8e-47 193.0 246 43.9
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 2.4e-46 189.9 247 44.9
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 7.8e-45 184.9 247 44.1
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 2.3e-44 183.3 218 46.8
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 2.5e-43 179.9 251 42.2
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 7.3e-43 178.3 251 41.8
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.6e-42 177.2 251 41.4
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 4.7e-42 175.6 184 47.8
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 3.0e-41 172.9 239 37.2
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 8.9e-41 171.4 241 37.3
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 4.4e-40 169.1 175 50.9
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 4.1e-38 162.5 174 45.4
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 7.8e-37 158.3 251 37.8
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 6.8e-33 145.2 202 38.6
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 8.9e-33 144.8 238 37.4
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 2.6e-32 143.3 165 43.0
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 9.8e-32 141.4 240 36.2
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 2.3e-28 130.2 259 32.0
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 3.3e-27 126.3 69 85.5
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 8.1e-18 95.1 93 49.5
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 3.6e-10 69.7 77 44.2
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 7.6e-08 62.0 103 36.9
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 2.9e-07 60.1 90 37.8
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 7.1e-06 55.5 85 42.4


User provided reference genes

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