Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0155101 Rosa chinensis HOM05D000053 ORTHO05D000035 2.0e-36 155.2 75 100.0
FvH4_6g40840 Fragaria vesca HOM05D000053 ORTHO05D000035 2.8e-27 124.8 74 79.7
FAN14G3738 Fragaria x ananassa HOM05D000053 ORTHO05D000035 2.8e-27 124.8 74 79.7
RcHm_v2.0_Chr2g0155021 Rosa chinensis HOM05D000053 ORTHO05D000035 2.8e-27 124.8 62 95.2
FAN05G2892 Fragaria x ananassa HOM05D000053 ORTHO05D000035 6.3e-27 123.6 74 78.4
RcHm_v2.0_Chr2g0154841 Rosa chinensis HOM05D000053 ORTHO05D000035 6.3e-27 123.6 62 93.5
RcHm_v2.0_Chr5g0030911 Rosa chinensis HOM05D000053 ORTHO05D000035 1.9e-23 112.1 61 90.2
RcHm_v2.0_Chr2g0156281 Rosa chinensis HOM05D000053 ORTHO05D000035 9.4e-23 109.8 62 85.5
RcHm_v2.0_Chr4g0408231 Rosa chinensis HOM05D000053 ORTHO05D000035 2.7e-22 108.2 62 85.5
RcHm_v2.0_Chr2g0156411 Rosa chinensis HOM05D000053 ORTHO05D000035 8.0e-22 106.7 61 83.6
FvH4_6g40847 Fragaria vesca HOM05D000053 ORTHO05D000035 3.0e-21 104.8 60 83.3
FAN14G4565 Fragaria x ananassa HOM05D000053 ORTHO05D000035 3.0e-21 104.8 61 82.0
FAN14G3992 Fragaria x ananassa HOM05D000053 ORTHO05D000035 3.9e-21 104.4 61 78.7
FvH4_6g40800 Fragaria vesca HOM05D000053 ORTHO05D000035 5.2e-21 104.0 62 80.6
FAN14G4009 Fragaria x ananassa HOM05D000053 ORTHO05D000035 5.2e-21 104.0 62 80.6
FvH4_6g40820 Fragaria vesca HOM05D000053 ORTHO05D000035 3.3e-20 101.3 61 80.3
FAN14G5898 Fragaria x ananassa HOM05D000053 ORTHO05D000035 3.3e-20 101.3 61 80.3
Prupe.3G199500 Prunus persica HOM05D000053 ORTHO05D000035 3.1e-18 94.7 60 76.7
Prupe.3G195900 Prunus persica HOM05D000053 ORTHO05D000035 4.1e-18 94.4 60 76.7
FAN14G5413 Fragaria x ananassa HOM05D000053 ORTHO05D000035 5.3e-18 94.0 62 72.6
MD09G1131100 Malus domestica HOM05D000053 ORTHO05D000035 2.6e-17 91.7 69 62.3
Prupe.3G094800 Prunus persica HOM05D000053 ORTHO05D000035 3.5e-17 91.3 61 75.4
MD09G1130600 Malus domestica HOM05D000053 ORTHO05D000035 4.5e-17 90.9 62 69.4
MD09G1124700 Malus domestica HOM05D000053 ORTHO05D000035 5.9e-17 90.5 69 63.8
MD09G1125300 Malus domestica HOM05D000053 ORTHO05D000035 1.7e-16 89.0 69 62.3
Prupe.3G199400 Prunus persica HOM05D000053 ORTHO05D000035 1.7e-16 89.0 61 73.8
MD09G1130900 Malus domestica HOM05D000053 ORTHO05D000035 2.2e-16 88.6 62 67.7
Prupe.3G094900 Prunus persica HOM05D000053 ORTHO05D000035 2.9e-16 88.2 61 67.2
Prupe.3G196000 Prunus persica HOM05D000053 ORTHO05D000035 2.9e-16 88.2 62 72.6
Prupe.3G199200 Prunus persica HOM05D000053 ORTHO05D000035 2.9e-16 88.2 62 72.6
MD09G1124300 Malus domestica HOM05D000053 ORTHO05D000035 5.0e-16 87.4 69 62.3
MD09G1124800 Malus domestica HOM05D000053 ORTHO05D000035 5.0e-16 87.4 69 62.3
MD09G1125600 Malus domestica HOM05D000053 ORTHO05D000035 6.5e-16 87.0 63 65.1
MD17G1115300 Malus domestica HOM05D000053 ORTHO05D000035 1.5e-15 85.9 64 64.1
RcHm_v2.0_Chr2g0156211 Rosa chinensis HOM05D000053 ORTHO05D000035 3.2e-15 84.7 66 63.6
RcHm_v2.0_Chr2g0156251 Rosa chinensis HOM05D000053 ORTHO05D000035 4.2e-15 84.3 62 66.1
FvH4_6g40760 Fragaria vesca HOM05D000053 ORTHO05D000035 1.0e-13 79.7 69 52.2
FAN14G2081 Fragaria x ananassa HOM05D000053 ORTHO05D000035 1.0e-13 79.7 69 52.2
FAN02G0696 Fragaria x ananassa HOM05D000053 ORTHO05D000035 8.8e-13 76.6 53 60.4
Prupe.3G199900 Prunus persica HOM05D000053 ORTHO05D000035 3.4e-12 74.7 49 73.5
RcHm_v2.0_Chr4g0385171 Rosa chinensis HOM05D000053 ORTHO05D000035 5.3e-10 67.4 52 63.5
Eucgr.A01034 Eucalyptus grandis HOM05D000053 ORTHO05D000035 9.1e-10 66.6 63 47.6
QL03p021272 Quercus lobata HOM05D000053 ORTHO05D000035 1.6e-09 65.9 72 44.4
HanXRQChr15g0464691 Helianthus annuus HOM05D000053 ORTHO05D000035 2.0e-09 65.5 61 47.5
QL03p021244 Quercus lobata HOM05D000053 ORTHO05D000035 3.5e-09 64.7 65 44.6
Eucgr.I00469 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.5e-09 64.3 61 49.2
Eucgr.I00550 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.5e-09 64.3 61 49.2
Eucgr.A01037 Eucalyptus grandis HOM05D000053 ORTHO05D000035 5.9e-09 63.9 61 45.9
FAN03G2820 Fragaria x ananassa HOM05D000053 ORTHO05D000035 1.0e-08 63.2 59 47.5
Eucgr.K00629 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.7e-08 62.4 64 46.9
Eucgr.K00640 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.7e-08 62.4 64 50.0
Manes.12G064900 Manihot esculenta HOM05D000053 ORTHO05D000035 1.7e-08 62.4 65 49.2
Eucgr.K00632 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.9e-08 61.6 64 48.4
CANSAT80G1424 Cannabis sativa HOM05D000053 ORTHO05D000035 3.8e-08 61.2 61 50.8
Dinv05342 Davidia involucrata HOM05D000053 ORTHO05D000035 6.5e-08 60.5 63 49.2
FAN06G2544 Fragaria x ananassa HOM05D000053 ORTHO05D000035 8.5e-08 60.1 59 49.2
Manes.12G065001 Manihot esculenta HOM05D000053 ORTHO05D000035 8.5e-08 60.1 58 46.6
Ciclev10014185m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.1e-07 59.7 64 50.0
Hma1.2p1_1023F.1_g249030 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 1.1e-07 59.7 61 47.5
Aqoxy3G02594_Aqoxy3G02595 Aquilegia oxysepala HOM05D000053 ORTHO05D000035 1.5e-07 59.3 60 48.3
Eucgr.A01030 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.5e-07 59.3 61 44.3
FvH4_7g10112 Fragaria vesca HOM05D000053 ORTHO05D000035 1.5e-07 59.3 59 45.8
QL11p039235 Quercus lobata HOM05D000053 ORTHO05D000035 1.5e-07 59.3 62 50.0
RcHm_v2.0_Chr1g0347811 Rosa chinensis HOM05D000053 ORTHO05D000035 1.5e-07 59.3 60 51.7
RcHm_v2.0_Chr1g0348951 Rosa chinensis HOM05D000053 ORTHO05D000035 1.5e-07 59.3 59 47.5
RcHm_v2.0_Chr6g0257441 Rosa chinensis HOM05D000053 ORTHO05D000035 1.5e-07 59.3 59 52.5
Eucgr.K00624 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.9e-07 58.9 64 46.9
RcHm_v2.0_Chr2g0173751 Rosa chinensis HOM05D000053 ORTHO05D000035 1.9e-07 58.9 60 53.3
Duzib128G1565 Durio zibethinus HOM05D000053 ORTHO05D000035 2.5e-07 58.5 61 50.8
FvH4_2g05950 Fragaria vesca HOM05D000053 ORTHO05D000035 2.5e-07 58.5 59 50.8
FAN24G2738 Fragaria x ananassa HOM05D000053 ORTHO05D000035 2.5e-07 58.5 59 50.8
HanXRQChr15g0464701 Helianthus annuus HOM05D000053 ORTHO05D000035 2.5e-07 58.5 61 49.2
Lj5C13T0 Lonicera japonica HOM05D000053 ORTHO05D000035 2.5e-07 58.5 61 47.5
CANSAT80G1562 Cannabis sativa HOM05D000053 ORTHO05D000035 3.2e-07 58.2 61 47.5
FvH4_7g31280 Fragaria vesca HOM05D000053 ORTHO05D000035 4.2e-07 57.8 59 47.5
HanXRQChr08g0214901 Helianthus annuus HOM05D000053 ORTHO05D000035 4.2e-07 57.8 61 44.3
Hma1.2p1_2122F.1_g314500 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 4.2e-07 57.8 61 47.5
CSS0003441 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 5.5e-07 57.4 61 49.2
CSS0008691 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 5.5e-07 57.4 61 49.2
CSS0016244 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 5.5e-07 57.4 59 49.2
Eucgr.K00636 Eucalyptus grandis HOM05D000053 ORTHO05D000035 5.5e-07 57.4 64 42.2
FAN06G1228 Fragaria x ananassa HOM05D000053 ORTHO05D000035 5.5e-07 57.4 59 42.4
FAN06G4773 Fragaria x ananassa HOM05D000053 ORTHO05D000035 5.5e-07 57.4 59 42.4
Glyma.09G145600 Glycine max HOM05D000053 ORTHO05D000035 5.5e-07 57.4 60 48.3
FAN06G2570 Fragaria x ananassa HOM05D000053 ORTHO05D000035 7.2e-07 57.0 59 42.4
FAN27G3101 Fragaria x ananassa HOM05D000053 ORTHO05D000035 7.2e-07 57.0 60 51.7
Hma1.2p1_1223F.1_g268360 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 7.2e-07 57.0 61 45.9
Lj5C587T0 Lonicera japonica HOM05D000053 ORTHO05D000035 7.2e-07 57.0 61 45.9
Prupe.2G128600 Prunus persica HOM05D000053 ORTHO05D000035 7.2e-07 57.0 59 49.2
QL09p013041 Quercus lobata HOM05D000053 ORTHO05D000035 7.2e-07 57.0 61 47.5
FvH4_6g04890 Fragaria vesca HOM05D000053 ORTHO05D000035 9.4e-07 56.6 62 50.0
FAN14G1809 Fragaria x ananassa HOM05D000053 ORTHO05D000035 9.4e-07 56.6 62 50.0
FAN14G2227 Fragaria x ananassa HOM05D000053 ORTHO05D000035 9.4e-07 56.6 62 50.0
FAN14G4324 Fragaria x ananassa HOM05D000053 ORTHO05D000035 9.4e-07 56.6 62 50.0
Hma1.2p1_1189F.1_g265330 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 9.4e-07 56.6 61 45.9
Hma1.2p1_2053F.1_g312700 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 9.4e-07 56.6 61 45.9
MD07G1069600 Malus domestica HOM05D000053 ORTHO05D000035 9.4e-07 56.6 59 45.8
RcHm_v2.0_Chr6g0257601 Rosa chinensis HOM05D000053 ORTHO05D000035 9.4e-07 56.6 59 49.2
RcHm_v2.0_Chr6g0257631 Rosa chinensis HOM05D000053 ORTHO05D000035 9.4e-07 56.6 59 49.2
CANSAT80G1529 Cannabis sativa HOM05D000053 ORTHO05D000035 1.2e-06 56.2 58 46.6
QL03p028533 Quercus lobata HOM05D000053 ORTHO05D000035 1.2e-06 56.2 61 44.3
RcHm_v2.0_Chr5g0083611 Rosa chinensis HOM05D000053 ORTHO05D000035 1.2e-06 56.2 59 47.5
Dinv26623 Davidia involucrata HOM05D000053 ORTHO05D000035 1.6e-06 55.8 62 51.6
Eucgr.E01234 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.6e-06 55.8 56 44.6
Eucgr.K00641 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.6e-06 55.8 64 43.8
FvH4_7g10130 Fragaria vesca HOM05D000053 ORTHO05D000035 1.6e-06 55.8 59 42.4
FAN01G1812 Fragaria x ananassa HOM05D000053 ORTHO05D000035 1.6e-06 55.8 59 45.8
HanXRQChr11g0329901 Helianthus annuus HOM05D000053 ORTHO05D000035 1.6e-06 55.8 63 52.4
Lj5A2T18 Lonicera japonica HOM05D000053 ORTHO05D000035 1.6e-06 55.8 61 44.3
MD07G1069300 Malus domestica HOM05D000053 ORTHO05D000035 1.6e-06 55.8 59 45.8
Prupe.2G128400 Prunus persica HOM05D000053 ORTHO05D000035 1.6e-06 55.8 59 47.5
RcHm_v2.0_Chr5g0083531 Rosa chinensis HOM05D000053 ORTHO05D000035 1.6e-06 55.8 59 47.5
TAR624G0734 Trochodendron aralioides HOM05D000053 ORTHO05D000035 1.6e-06 55.8 64 46.9
Ciclev10000141m.g Citrus clementina HOM05D000053 ORTHO05D000035 2.1e-06 55.5 64 46.9
Ciclev10000193m.g Citrus clementina HOM05D000053 ORTHO05D000035 2.1e-06 55.5 64 48.4
Eucgr.G00996 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.1e-06 55.5 64 43.8
Hma1.2p1_2053F.1_g312690 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 2.1e-06 55.5 61 45.9
Lj5C11T5 Lonicera japonica HOM05D000053 ORTHO05D000035 2.1e-06 55.5 61 44.3
RcHm_v2.0_Chr5g0083401 Rosa chinensis HOM05D000053 ORTHO05D000035 2.1e-06 55.5 59 47.5
Ciclev10000162m.g Citrus clementina HOM05D000053 ORTHO05D000035 2.7e-06 55.1 64 45.3
Ciclev10003290m.g Citrus clementina HOM05D000053 ORTHO05D000035 2.7e-06 55.1 64 48.4
Ciclev10010871m.g Citrus clementina HOM05D000053 ORTHO05D000035 2.7e-06 55.1 64 45.3
Duzib128G1676 Durio zibethinus HOM05D000053 ORTHO05D000035 2.7e-06 55.1 61 49.2
RcHm_v2.0_Chr1g0340521 Rosa chinensis HOM05D000053 ORTHO05D000035 2.7e-06 55.1 61 52.5
RcHm_v2.0_Chr6g0257621 Rosa chinensis HOM05D000053 ORTHO05D000035 2.7e-06 55.1 60 50.0
Hund19277 Selenicereus undatus HOM05D000053 ORTHO05D000035 2.7e-06 55.1 67 41.8
TAR624G1295 Trochodendron aralioides HOM05D000053 ORTHO05D000035 2.7e-06 55.1 59 49.2
vmacro09440 Vaccinium macrocarpon HOM05D000053 ORTHO05D000035 2.7e-06 55.1 63 47.6
Ciclev10003266m.g Citrus clementina HOM05D000053 ORTHO05D000035 3.6e-06 54.7 64 42.2
Duzib128G1045 Durio zibethinus HOM05D000053 ORTHO05D000035 3.6e-06 54.7 62 50.0
Eucgr.E02460 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.6e-06 54.7 72 47.2
Prupe.2G130900 Prunus persica HOM05D000053 ORTHO05D000035 3.6e-06 54.7 61 47.5
QL09p020670 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-06 54.7 61 42.6
RcHm_v2.0_Chr1g0357511 Rosa chinensis HOM05D000053 ORTHO05D000035 3.6e-06 54.7 61 52.5
RcHm_v2.0_Chr5g0083471 Rosa chinensis HOM05D000053 ORTHO05D000035 3.6e-06 54.7 59 47.5
CSS0023175 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 4.7e-06 54.3 63 44.4
CANSAT64G1875 Cannabis sativa HOM05D000053 ORTHO05D000035 4.7e-06 54.3 58 43.1
CANSAT64G2238 Cannabis sativa HOM05D000053 ORTHO05D000035 4.7e-06 54.3 58 43.1
Ciclev10003386m.g Citrus clementina HOM05D000053 ORTHO05D000035 4.7e-06 54.3 64 43.8
Cc01_g08280 Coffea canephora HOM05D000053 ORTHO05D000035 4.7e-06 54.3 73 43.8
Cc01_g08320 Coffea canephora HOM05D000053 ORTHO05D000035 4.7e-06 54.3 73 43.8
Eucgr.E00143 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.7e-06 54.3 56 44.6
FAN10G3344 Fragaria x ananassa HOM05D000053 ORTHO05D000035 4.7e-06 54.3 58 41.4
FAN10G3652 Fragaria x ananassa HOM05D000053 ORTHO05D000035 4.7e-06 54.3 58 41.4
FAN10G3985 Fragaria x ananassa HOM05D000053 ORTHO05D000035 4.7e-06 54.3 58 41.4
FAN10G4024 Fragaria x ananassa HOM05D000053 ORTHO05D000035 4.7e-06 54.3 59 45.8
HanXRQChr13g0412181 Helianthus annuus HOM05D000053 ORTHO05D000035 4.7e-06 54.3 61 49.2
Lj1P667T8 Lonicera japonica HOM05D000053 ORTHO05D000035 4.7e-06 54.3 64 40.6
QL03p028493 Quercus lobata HOM05D000053 ORTHO05D000035 4.7e-06 54.3 61 45.9
QL09p013003 Quercus lobata HOM05D000053 ORTHO05D000035 4.7e-06 54.3 61 42.6
QL09p046439 Quercus lobata HOM05D000053 ORTHO05D000035 4.7e-06 54.3 61 44.3
RcHm_v2.0_Chr5g0083651 Rosa chinensis HOM05D000053 ORTHO05D000035 4.7e-06 54.3 59 47.5
arahy.Tifrunner.gnm1.ann1.LRL5L7 Arachis hypogaea HOM05D000053 ORTHO05D000035 6.1e-06 53.9 65 41.5
Eucgr.E00153 Eucalyptus grandis HOM05D000053 ORTHO05D000035 6.1e-06 53.9 56 44.6
Eucgr.E01200 Eucalyptus grandis HOM05D000053 ORTHO05D000035 6.1e-06 53.9 61 42.6
Eucgr.E01227 Eucalyptus grandis HOM05D000053 ORTHO05D000035 6.1e-06 53.9 56 44.6
Eucgr.K00633 Eucalyptus grandis HOM05D000053 ORTHO05D000035 6.1e-06 53.9 64 42.2
HanXRQChr16g0519271 Helianthus annuus HOM05D000053 ORTHO05D000035 6.1e-06 53.9 61 45.9
Hma1.2p1_1532F.1_g289340 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 6.1e-06 53.9 61 45.9
Lsat_1_v5_gn_7_98860 Lactuca sativa HOM05D000053 ORTHO05D000035 6.1e-06 53.9 62 41.9
MD07G1106900 Malus domestica HOM05D000053 ORTHO05D000035 6.1e-06 53.9 60 46.7
QL09p047929 Quercus lobata HOM05D000053 ORTHO05D000035 6.1e-06 53.9 61 42.6
RcHm_v2.0_Chr1g0340411 Rosa chinensis HOM05D000053 ORTHO05D000035 6.1e-06 53.9 60 51.7
Thecc.07G158300 Theobroma cacao HOM05D000053 ORTHO05D000035 6.1e-06 53.9 76 36.8
CSS0001284 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 8.0e-06 53.5 61 45.9
CiPaw.03G280300 Carya illinoinensis HOM05D000053 ORTHO05D000035 8.0e-06 53.5 66 43.9
FAN06G0054 Fragaria x ananassa HOM05D000053 ORTHO05D000035 8.0e-06 53.5 61 49.2
Hma1.2p1_1656F.1_g296020 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 8.0e-06 53.5 61 42.6
Lj5P577T8 Lonicera japonica HOM05D000053 ORTHO05D000035 8.0e-06 53.5 61 42.6


User provided reference genes

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