Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 3.1e-69 265.0 131 100.0
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 4.4e-60 234.6 131 90.8
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 5.2e-53 211.1 130 85.4
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 3.3e-47 191.8 135 77.0
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.6e-47 191.0 135 77.0
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.6e-46 189.5 137 76.6
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.4e-44 181.8 135 74.8
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 7.8e-41 170.6 85 94.1
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 5.1e-40 167.9 151 66.2
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 4.3e-39 164.9 81 96.3
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 1.5e-36 156.4 154 58.4
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 7.6e-36 154.1 156 53.8
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 9.9e-36 153.7 147 55.1
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 9.9e-36 153.7 148 56.1
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 3.8e-35 151.8 151 53.0
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 6.4e-35 151.0 107 68.2
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 6.4e-35 151.0 107 68.2
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.2e-34 148.7 115 60.9
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 3.2e-34 148.7 114 64.0
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.2e-34 148.7 151 51.0
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 4.2e-34 148.3 125 61.6
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 4.2e-34 148.3 149 55.0
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 5.4e-34 147.9 107 68.2
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 5.4e-34 147.9 107 67.3
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 7.1e-34 147.5 123 60.2
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 9.3e-34 147.1 148 54.1
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.6e-33 146.4 115 60.0
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.1e-33 146.0 122 56.6
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 2.7e-33 145.6 115 60.0
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 2.7e-33 145.6 148 54.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 3.5e-33 145.2 125 61.6
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 3.5e-33 145.2 151 52.3
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 6.0e-33 144.4 112 62.5
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 6.0e-33 144.4 150 54.7
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 7.9e-33 144.1 146 54.1
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 7.9e-33 144.1 125 58.4
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.3e-32 143.3 130 59.2
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 1.7e-32 142.9 111 63.1
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.7e-32 142.9 131 55.0
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 1.7e-32 142.9 155 51.6
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.3e-32 142.5 149 50.3
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.3e-32 142.5 126 61.1
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.0e-32 142.1 149 50.3
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 3.0e-32 142.1 140 52.1
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 3.9e-32 141.7 155 50.3
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 3.9e-32 141.7 109 64.2
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 3.9e-32 141.7 109 64.2
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 5.1e-32 141.4 148 54.1
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 5.1e-32 141.4 150 54.0
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 6.6e-32 141.0 127 59.1
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 6.6e-32 141.0 139 55.4
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 6.6e-32 141.0 158 50.6
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 1.5e-31 139.8 154 47.4
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.5e-31 139.8 124 57.3
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.9e-31 139.4 109 60.6
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 2.5e-31 139.0 145 53.1
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 3.3e-31 138.7 147 51.0
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.3e-31 138.7 124 58.9
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 3.3e-31 138.7 149 51.7
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 4.3e-31 138.3 100 63.0
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 4.3e-31 138.3 128 56.2
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 5.6e-31 137.9 151 51.7
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 5.6e-31 137.9 123 60.2
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 7.4e-31 137.5 155 49.7
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 1.3e-30 136.7 129 53.5
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 1.3e-30 136.7 147 49.7
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.3e-30 136.7 130 57.7
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.3e-30 136.7 156 50.6
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.3e-30 136.7 130 56.2
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.1e-30 136.0 125 56.0
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 2.1e-30 136.0 124 58.9
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 2.1e-30 136.0 124 57.3
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.6e-30 135.2 150 50.7
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 6.2e-30 134.4 113 57.5
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 8.1e-30 134.0 118 55.9
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 8.1e-30 134.0 118 56.8
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 8.1e-30 134.0 129 55.8
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.1e-29 133.7 129 55.8
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 1.4e-29 133.3 150 48.0
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.8e-29 132.9 130 53.8
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 1.8e-29 132.9 155 48.4
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 3.1e-29 132.1 144 51.4
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 4.0e-29 131.7 122 54.9
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 4.0e-29 131.7 122 54.9
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 9.0e-29 130.6 159 49.7
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.5e-28 129.8 123 55.3
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 2.0e-28 129.4 139 50.4
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.6e-28 129.0 126 54.8
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 3.8e-27 125.2 108 56.5
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 4.9e-27 124.8 150 46.7
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 6.4e-27 124.4 123 51.2
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 6.4e-27 124.4 137 48.9
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 8.4e-27 124.0 155 46.5
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.1e-26 123.6 136 50.0
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.7e-25 119.0 144 47.9
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.0e-24 117.1 103 51.5
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.3e-24 116.7 178 43.3
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.8e-24 116.3 133 47.4
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.1e-21 105.5 123 48.0
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 5.3e-21 104.8 53 94.3
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.5e-20 103.2 120 49.2
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 2.0e-20 102.8 86 60.5
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 6.5e-19 97.8 111 48.6
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 5.5e-18 94.7 97 56.7
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 7.1e-18 94.4 109 50.5
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.8e-16 89.7 122 45.9
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 5.7e-15 84.7 68 63.2
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 8.2e-14 80.9 80 52.5
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 2.0e-12 76.3 140 32.9
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.3e-08 63.5 140 35.0
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 2.3e-08 62.8 37 64.9
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.9e-07 59.7 93 37.6
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 2.2e-06 56.2 35 71.4
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 6.3e-06 54.7 54 48.1


User provided reference genes

Program Settings