Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 6.2e-288 993.4 499 100.0
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.9e-238 827.4 502 84.5
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.2e-236 821.6 505 84.8
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 2.7e-235 818.5 505 84.6
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 3.5e-222 775.0 478 80.1
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 8.5e-221 770.4 484 78.9
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 5.5e-220 767.7 482 79.7
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 8.0e-203 710.7 471 75.2
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 9.8e-201 703.7 487 73.7
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.7e-198 695.7 466 75.5
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.5e-198 695.3 479 74.7
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 1.0e-197 693.7 480 73.8
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.3e-197 692.6 468 75.2
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 2.5e-196 689.1 481 73.6
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.5e-196 689.1 471 74.7
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 7.3e-196 687.6 481 71.7
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 9.5e-196 687.2 467 73.9
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 9.5e-196 687.2 478 74.1
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.4e-194 683.3 482 72.6
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 6.8e-194 681.0 478 71.5
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.5e-193 679.9 482 71.6
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 4.4e-193 678.3 483 72.5
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.7e-192 676.4 483 72.3
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.7e-192 676.4 476 72.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 2.9e-192 675.6 481 71.7
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 4.1e-191 671.8 484 71.3
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 4.1e-191 671.8 486 70.8
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 5.4e-191 671.4 475 73.5
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.7e-190 669.1 503 74.4
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 3.5e-190 668.7 470 71.9
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 7.8e-190 667.5 486 71.0
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.3e-189 666.8 475 72.0
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.7e-189 666.4 477 71.1
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 3.9e-189 665.2 482 70.3
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 5.0e-189 664.8 480 71.5
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 8.6e-189 664.1 475 72.0
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 6.2e-187 657.9 472 71.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.1e-186 657.1 468 70.9
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.4e-186 656.8 466 70.8
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.9e-184 649.0 490 68.8
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 1.1e-183 647.1 485 69.3
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 2.7e-182 642.5 474 68.6
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.0e-181 640.6 474 68.6
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 2.3e-181 639.4 474 69.6
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.3e-181 639.4 474 69.2
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.2e-179 633.6 467 68.3
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.1e-179 632.9 506 67.0
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 6.2e-179 631.3 475 67.4
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.1e-178 630.6 467 69.6
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.1e-178 629.0 475 67.6
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.5e-177 626.7 467 67.7
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.5e-177 626.7 471 67.9
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.5e-177 626.7 467 67.7
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 2.0e-177 626.3 473 67.7
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 7.6e-177 624.4 469 67.8
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.3e-176 623.6 466 68.7
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.3e-176 623.6 489 66.1
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.9e-176 622.5 468 67.5
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 6.4e-176 621.3 475 66.9
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.1e-174 616.3 479 66.8
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 3.0e-173 612.5 480 67.7
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 3.9e-173 612.1 475 65.9
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 6.6e-173 611.3 441 71.2
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.6e-171 606.7 469 66.5
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.7e-171 605.1 479 67.2
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 8.1e-171 604.4 478 64.9
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.1e-170 604.0 525 60.6
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 7.6e-169 597.8 484 63.4
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.1e-167 591.3 453 70.2
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 7.1e-167 591.3 481 64.7
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.1e-166 589.7 471 66.0
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.5e-166 589.0 468 66.0
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.0e-165 587.4 457 68.1
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 2.1e-163 579.7 463 65.2
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.1e-163 579.7 469 65.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 4.8e-163 578.6 473 62.8
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 6.9e-162 574.7 480 64.8
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.5e-161 573.5 476 63.0
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 3.8e-160 568.9 480 63.3
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 2.4e-159 566.2 486 61.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 4.2e-159 565.5 464 63.6
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 5.1e-157 558.5 482 61.0
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.6e-156 555.1 465 62.6
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 1.2e-153 547.4 487 59.8
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.2e-150 537.3 401 68.8
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.6e-150 537.0 487 61.8
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 6.7e-149 531.6 472 58.5
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 5.6e-148 528.5 471 60.5
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 2.1e-147 526.6 456 62.1
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 4.0e-146 522.3 547 52.1
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 5.8e-145 518.5 484 58.5
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.9e-143 513.5 523 54.9
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 4.2e-143 512.3 402 66.2
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 2.7e-142 509.6 365 72.6
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 6.7e-141 505.0 462 57.4
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 6.2e-139 498.4 393 65.9
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 6.2e-139 498.4 379 66.8
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.3e-136 490.7 262 87.0
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 9.3e-135 484.6 467 56.1
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.0e-133 481.1 446 59.6
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 6.7e-133 478.4 511 52.4
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 2.6e-129 466.5 416 61.5
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 3.8e-128 462.6 848 37.3
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 1.2e-126 457.6 542 47.0
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 3.6e-126 456.1 466 52.8
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.3e-124 449.1 494 54.7
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.8e-122 443.7 264 79.2
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.0e-121 440.3 509 49.7
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.9e-111 407.1 332 65.1
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.0e-109 401.4 477 50.5
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 2.6e-105 386.7 384 57.8
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 7.2e-103 378.6 485 49.3
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 4.1e-98 362.8 425 53.2
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-91 340.1 628 36.5
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 3.8e-88 329.7 226 67.3
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.2e-84 318.2 333 53.5
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.2e-78 298.1 194 70.6
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 3.4e-76 290.0 458 38.4
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 2.2e-75 287.3 464 37.3
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 6.6e-64 249.2 315 42.5
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.2e-62 245.0 132 85.6
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 2.6e-60 237.3 133 82.0
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 4.4e-60 236.5 343 39.9
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.1e-58 231.9 386 41.5
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.4e-52 210.3 284 40.5
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.7e-51 208.0 113 84.1
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 4.0e-45 186.8 109 81.7
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.4e-34 151.0 86 81.4
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.2e-25 122.1 61 86.9
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 4.6e-25 120.2 76 73.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.1e-21 107.5 80 65.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 2.5e-15 87.8 123 45.5
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 5.7e-15 86.7 41 92.7
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 9.0e-13 79.3 47 87.2
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 5.0e-11 73.6 61 57.4
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.1e-10 72.4 90 45.6
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 1.2e-09 68.9 72 52.8
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.6e-09 68.6 48 66.7
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 2.1e-09 68.2 122 43.4
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 4.6e-09 67.0 44 72.7


User provided reference genes

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