Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-31 139.0 74 100.0
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 9.6e-28 126.3 74 90.5
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.0e-25 118.6 75 80.0
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 3.4e-25 117.9 74 86.5
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.9e-24 114.0 75 88.0
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.9e-24 114.0 75 88.0
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.4e-24 113.2 75 86.7
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 1.1e-23 112.8 75 86.7
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 3.2e-23 111.3 75 86.7
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.3e-23 109.8 75 86.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 1.3e-21 105.9 74 81.1
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.7e-21 105.5 60 81.7
FvH4_6g39682 Fragaria vesca HOM05D002385 ORTHO05D002245 6.6e-21 103.6 63 82.5
FAN05G0132 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.9e-20 102.1 60 80.0
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 3.3e-20 101.3 74 77.0
FvH4_6g39640 Fragaria vesca HOM05D002385 ORTHO05D002245 2.1e-19 98.6 60 76.7
FAN14G3978 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.1e-19 98.6 60 76.7
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 1.2e-17 92.8 56 76.8
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 6.4e-16 87.0 75 77.3
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.2e-15 84.3 61 77.0
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 5.4e-15 84.0 75 74.7
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 9.3e-15 83.2 82 65.9
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 2.7e-14 81.6 74 60.8
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.7e-14 81.6 76 69.7
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.0e-13 79.7 60 78.3
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.8e-13 79.0 77 66.2
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 3.9e-13 77.8 63 73.0
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 5.1e-13 77.4 54 77.8
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 5.1e-13 77.4 80 71.2
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 6.7e-13 77.0 62 74.2
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 8.7e-13 76.6 84 63.1
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.1e-12 76.3 68 67.6
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.5e-12 75.1 77 74.0
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 3.3e-12 74.7 65 67.7
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 5.6e-12 73.9 72 54.2
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 7.4e-12 73.6 68 67.6
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 9.6e-12 73.2 74 63.5
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 9.6e-12 73.2 62 72.6
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 9.6e-12 73.2 62 72.6
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 9.6e-12 73.2 73 65.8
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.3e-11 72.8 73 64.4
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.6e-11 72.4 72 63.9
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.1e-11 72.0 78 62.8
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.1e-11 72.0 78 62.8
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 4.8e-11 70.9 64 67.2
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 4.8e-11 70.9 61 65.6
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 6.2e-11 70.5 71 59.2
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 6.2e-11 70.5 71 59.2
MD01G1028400 Malus domestica HOM05D002385 ORTHO05D002245 6.2e-11 70.5 50 72.0
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 8.1e-11 70.1 57 68.4
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 1.1e-10 69.7 60 75.0
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 1.4e-10 69.3 64 56.2
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 1.8e-10 68.9 64 62.5
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.8e-10 68.9 61 68.9
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 2.4e-10 68.6 62 67.7
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 2.4e-10 68.6 73 64.4
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.4e-10 68.6 68 63.2
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 2.4e-10 68.6 74 58.1
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 2.4e-10 68.6 74 58.1
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.4e-10 68.6 68 61.8
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 4.0e-10 67.8 64 67.2
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 5.3e-10 67.4 57 70.2
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.3e-10 67.4 73 49.3
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 6.9e-10 67.0 72 54.2
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 6.9e-10 67.0 74 66.2
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 6.9e-10 67.0 63 68.3
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 9.0e-10 66.6 64 59.4
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 9.0e-10 66.6 62 66.1
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.2e-09 66.2 61 60.7
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.2e-09 66.2 61 60.7
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 1.5e-09 65.9 69 60.9
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.5e-09 65.9 68 57.4
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.0e-09 65.5 66 62.1
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 2.0e-09 65.5 72 52.8
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.0e-09 65.5 69 62.3
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 2.0e-09 65.5 75 58.7
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 2.0e-09 65.5 63 68.3
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.0e-09 65.5 74 55.4
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 2.6e-09 65.1 72 51.4
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 2.6e-09 65.1 72 51.4
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 2.6e-09 65.1 79 60.8
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 2.6e-09 65.1 75 58.7
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.6e-09 65.1 56 69.6
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.4e-09 64.7 67 62.7
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 3.4e-09 64.7 74 59.5
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.4e-09 64.7 55 69.1
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 3.4e-09 64.7 68 60.3
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 3.4e-09 64.7 73 61.6
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 4.5e-09 64.3 64 57.8
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 4.5e-09 64.3 48 75.0
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 5.8e-09 63.9 72 50.0
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 5.8e-09 63.9 72 54.2
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 7.6e-09 63.5 67 62.7
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.6e-09 63.5 64 62.5
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.6e-09 63.5 64 64.1
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 7.6e-09 63.5 57 59.6
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 7.6e-09 63.5 51 72.5
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 7.6e-09 63.5 55 63.6
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 7.6e-09 63.5 79 57.0
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 7.6e-09 63.5 68 51.5
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.6e-09 63.5 62 53.2
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.0e-08 63.2 69 55.1
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 1.0e-08 63.2 74 58.1
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.0e-08 63.2 57 66.7
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 1.3e-08 62.8 57 64.9
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 52.8
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 52.8
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.3e-08 62.8 71 56.3
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.3e-08 62.8 71 56.3
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 54.2
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 1.7e-08 62.4 72 52.8
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 1.7e-08 62.4 72 52.8
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 1.7e-08 62.4 72 52.8
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 1.7e-08 62.4 65 50.8
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 1.7e-08 62.4 72 61.1
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.7e-08 62.4 74 52.7
Prupe.6G185000 Prunus persica HOM05D002385 ORTHO05D002245 1.7e-08 62.4 71 64.8
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.2e-08 62.0 59 66.1
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.2e-08 62.0 59 52.5
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.2e-08 62.0 62 62.9
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.9e-08 61.6 72 52.8
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 2.9e-08 61.6 54 59.3
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.9e-08 61.6 73 60.3
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 2.9e-08 61.6 60 50.0
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 2.9e-08 61.6 60 61.7
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.8e-08 61.2 46 69.6
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 3.8e-08 61.2 75 52.0
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.8e-08 61.2 63 52.4
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 3.8e-08 61.2 71 59.2
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 3.8e-08 61.2 61 65.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.8e-08 61.2 61 57.4
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.8e-08 61.2 55 58.2
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 4.9e-08 60.8 80 56.2
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 4.9e-08 60.8 70 57.1
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 4.9e-08 60.8 74 56.8
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 6.5e-08 60.5 58 51.7
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 6.5e-08 60.5 61 57.4
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 6.5e-08 60.5 55 63.6
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 6.5e-08 60.5 59 64.4
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 8.4e-08 60.1 57 68.4
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 8.4e-08 60.1 69 63.8
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 8.4e-08 60.1 57 57.9
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 8.4e-08 60.1 69 63.8
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 8.4e-08 60.1 74 50.0
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.1e-07 59.7 78 53.8
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 1.1e-07 59.7 66 48.5
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.4e-07 59.3 67 55.2
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 72 50.0
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 72 56.9
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 1.4e-07 59.3 62 54.8
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 1.4e-07 59.3 55 61.8
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 2.5e-07 58.5 73 46.6
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 2.5e-07 58.5 72 61.1
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 2.5e-07 58.5 51 68.6
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.5e-07 58.5 72 48.6
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 2.5e-07 58.5 51 58.8
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 3.2e-07 58.2 73 54.8
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 3.2e-07 58.2 59 54.2
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 3.2e-07 58.2 60 55.0
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 4.2e-07 57.8 74 55.4
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 4.2e-07 57.8 75 56.0
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 5.5e-07 57.4 61 62.3
FAN23G2683 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.5e-07 57.4 64 65.6
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 7.1e-07 57.0 61 60.7
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 7.1e-07 57.0 55 52.7
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 7.1e-07 57.0 56 51.8
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 7.1e-07 57.0 71 57.7
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 9.3e-07 56.6 56 58.9
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 9.3e-07 56.6 63 58.7
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 1.2e-06 56.2 60 58.3
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.2e-06 56.2 54 59.3
Prupe.6G185100 Prunus persica HOM05D002385 ORTHO05D002245 2.1e-06 55.5 74 54.1
Prupe.6G185300 Prunus persica HOM05D002385 ORTHO05D002245 2.1e-06 55.5 74 54.1
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.7e-06 55.1 58 53.4
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 2.7e-06 55.1 56 55.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 2.7e-06 55.1 56 55.4
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 3.5e-06 54.7 63 49.2
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.5e-06 54.7 63 55.6
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 3.5e-06 54.7 61 49.2
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 3.5e-06 54.7 50 60.0
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.6e-06 54.3 74 44.6
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 4.6e-06 54.3 50 56.0
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 4.6e-06 54.3 57 52.6
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 6.0e-06 53.9 54 48.1
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 6.0e-06 53.9 51 64.7
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 7.9e-06 53.5 74 47.3
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 7.9e-06 53.5 61 47.5


User provided reference genes

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