Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 2.9e-32 141.4 74 100.0
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 2.0e-25 118.6 74 87.8
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 3.4e-25 117.9 74 86.5
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 6.4e-24 113.6 75 89.3
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 6.4e-24 113.6 75 89.3
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 1.4e-23 112.5 75 88.0
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.9e-23 112.1 60 88.3
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 4.2e-23 110.9 75 88.0
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.4e-23 110.5 75 86.7
FAN05G0132 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.1e-22 108.6 60 86.7
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.1e-22 108.6 75 86.7
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-22 108.2 75 74.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 4.6e-22 107.5 74 83.8
FvH4_6g39640 Fragaria vesca HOM05D002385 ORTHO05D002245 6.6e-21 103.6 60 81.7
FAN14G3978 Fragaria x ananassa HOM05D002385 ORTHO05D002245 6.6e-21 103.6 60 81.7
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 8.1e-19 96.7 74 77.0
FvH4_6g39682 Fragaria vesca HOM05D002385 ORTHO05D002245 1.8e-18 95.5 63 79.4
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 7.1e-15 83.6 56 71.4
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 1.3e-13 79.3 75 72.0
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 3.0e-13 78.2 74 59.5
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 3.0e-13 78.2 75 70.7
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 3.9e-13 77.8 82 63.4
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 5.1e-13 77.4 60 76.7
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.5e-12 75.9 78 65.4
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.9e-12 75.5 62 71.0
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.9e-12 75.5 76 65.8
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 4.3e-12 74.3 68 67.6
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.3e-12 74.3 75 68.0
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.6e-12 73.9 61 70.5
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 7.4e-12 73.6 68 66.2
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 1.6e-11 72.4 84 61.9
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.8e-11 71.6 77 62.3
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 2.8e-11 71.6 54 74.1
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.7e-11 71.2 74 62.2
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 4.8e-11 70.9 68 57.4
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 6.2e-11 70.5 57 71.9
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 8.1e-11 70.1 81 61.7
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.4e-10 69.3 61 65.6
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-10 69.3 61 65.6
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-10 69.3 61 65.6
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 63.0
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 1.8e-10 68.9 62 69.4
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 3.1e-10 68.2 63 65.1
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 4.0e-10 67.8 65 63.1
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 5.3e-10 67.4 70 64.3
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.3e-10 67.4 62 67.7
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 6.9e-10 67.0 69 59.4
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 6.9e-10 67.0 69 60.9
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 9.0e-10 66.6 64 60.9
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 1.2e-09 66.2 74 60.8
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 1.2e-09 66.2 74 60.8
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 2.0e-09 65.5 71 56.3
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 2.0e-09 65.5 71 56.3
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.0e-09 65.5 74 60.8
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 2.0e-09 65.5 73 61.6
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.0e-09 65.5 55 69.1
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 2.6e-09 65.1 74 55.4
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.6e-09 65.1 68 60.3
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.6e-09 65.1 68 58.8
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.4e-09 64.7 73 58.9
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.4e-09 64.7 73 47.9
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.4e-09 64.7 73 61.6
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 4.5e-09 64.3 74 58.1
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 4.5e-09 64.3 64 53.1
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 4.5e-09 64.3 75 54.7
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 4.5e-09 64.3 73 60.3
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 5.8e-09 63.9 60 70.0
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 5.8e-09 63.9 69 59.4
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.8e-09 63.9 78 59.0
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.8e-09 63.9 78 59.0
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 7.6e-09 63.5 72 52.8
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 7.6e-09 63.5 73 60.3
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 7.6e-09 63.5 73 60.3
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 7.6e-09 63.5 60 51.7
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.0e-08 63.2 70 62.9
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.3e-08 62.8 66 60.6
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.7e-08 62.4 55 58.2
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.2e-08 62.0 67 61.2
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 2.2e-08 62.0 72 51.4
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 2.2e-08 62.0 72 50.0
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.2e-08 62.0 62 59.7
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.2e-08 62.0 62 59.7
MD01G1028400 Malus domestica HOM05D002385 ORTHO05D002245 2.2e-08 62.0 50 66.0
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 2.2e-08 62.0 74 58.1
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.2e-08 62.0 76 56.6
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 2.9e-08 61.6 72 50.0
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 2.9e-08 61.6 72 50.0
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 2.9e-08 61.6 67 62.7
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.9e-08 61.6 64 57.8
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.9e-08 61.6 64 64.1
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 2.9e-08 61.6 69 55.1
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.9e-08 61.6 57 66.7
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 3.8e-08 61.2 57 63.2
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 3.8e-08 61.2 76 56.6
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.8e-08 61.2 62 53.2
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 6.5e-08 60.5 78 59.0
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.5e-08 60.5 68 54.4
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 8.4e-08 60.1 72 51.4
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 8.4e-08 60.1 72 51.4
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 8.4e-08 60.1 57 64.9
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.1e-07 59.7 63 63.5
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.1e-07 59.7 64 54.7
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.1e-07 59.7 73 58.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.1e-07 59.7 70 52.9
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 72 56.9
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.4e-07 59.3 78 57.7
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.4e-07 59.3 64 60.9
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 1.4e-07 59.3 73 57.5
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 1.4e-07 59.3 71 54.9
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 56.9
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 51.4
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 51.4
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 51.4
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.9e-07 58.9 64 60.9
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.9e-07 58.9 57 57.9
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 1.9e-07 58.9 55 60.0
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.5e-07 58.5 74 51.4
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 3.2e-07 58.2 74 50.0
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 3.2e-07 58.2 59 49.2
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 3.2e-07 58.2 59 54.2
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.2e-07 58.2 64 59.4
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.2e-07 58.2 62 56.5
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.2e-07 58.2 77 45.5
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 4.2e-07 57.8 72 51.4
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 4.2e-07 57.8 60 56.7
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 4.2e-07 57.8 69 52.2
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 4.2e-07 57.8 74 54.1
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 4.2e-07 57.8 65 49.2
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.2e-07 57.8 63 63.5
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 4.2e-07 57.8 71 56.3
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 4.2e-07 57.8 71 53.5
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.2e-07 57.8 72 51.4
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 4.2e-07 57.8 60 58.3
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 5.5e-07 57.4 68 47.1
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 5.5e-07 57.4 56 60.7
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 7.1e-07 57.0 69 60.9
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 7.1e-07 57.0 65 53.8
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 7.1e-07 57.0 69 60.9
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 7.1e-07 57.0 45 60.0
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 7.1e-07 57.0 70 57.1
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 9.3e-07 56.6 69 59.4
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 9.3e-07 56.6 69 56.5
FAN23G2683 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.3e-07 56.6 62 58.1
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 9.3e-07 56.6 72 56.9
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 9.3e-07 56.6 74 48.6
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.2e-06 56.2 70 52.9
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 1.2e-06 56.2 74 47.3
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.2e-06 56.2 72 48.6
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 1.2e-06 56.2 72 59.7
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 1.2e-06 56.2 64 57.8
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 1.2e-06 56.2 62 61.3
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.2e-06 56.2 48 68.8
Lsat_1_v5_gn_1_82281 Lactuca sativa HOM05D019240 ORTHO05D002245 1.6e-06 55.8 50 48.0
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 1.6e-06 55.8 56 58.9
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.6e-06 55.8 54 64.8
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.1e-06 55.5 58 48.3
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.1e-06 55.5 74 50.0
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 2.1e-06 55.5 66 56.1
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.7e-06 55.1 66 47.0
Prupe.6G185000 Prunus persica HOM05D002385 ORTHO05D002245 2.7e-06 55.1 70 55.7
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 3.5e-06 54.7 72 54.2
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-06 54.7 72 47.2
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 3.5e-06 54.7 79 54.4
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 4.6e-06 54.3 56 55.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 4.6e-06 54.3 56 55.4
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 6.0e-06 53.9 72 54.2
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 6.0e-06 53.9 55 58.2
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 7.9e-06 53.5 62 50.0


User provided reference genes

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