Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0153351 Rosa chinensis HOM05D000100 ORTHO05D341098 5.7e-49 197.2 96 100.0
FvH4_6g39380 Fragaria vesca HOM05D000100 ORTHO05D000052 1.6e-11 72.8 39 87.2
FAN02G2784 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.6e-11 72.8 39 87.2
RcHm_v2.0_Chr1g0340061 Rosa chinensis HOM05D000100 ORTHO05D000052 2.8e-11 72.0 39 84.6
FAN09G4643 Fragaria x ananassa HOM05D000100 ORTHO05D000052 4.7e-11 71.2 39 84.6
FAN05G5499 Fragaria x ananassa HOM05D000100 ORTHO05D000052 8.1e-11 70.5 39 84.6
FAN14G5050 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.4e-10 68.9 39 82.1
SHI47764 Sapria himalayana HOM05D000100 ORTHO05D000052 2.2e-08 62.4 40 72.5
FAN14G1818 Fragaria x ananassa HOM05D000100 ORTHO05D000052 4.9e-08 61.2 39 69.2
Cc06_g22480 Coffea canephora HOM05D000100 ORTHO05D000052 8.4e-08 60.5 40 70.0
Cc05_g01940 Coffea canephora HOM05D000100 ORTHO05D000052 1.4e-07 59.7 48 60.4
FvH4_6g39430 Fragaria vesca HOM05D000100 ORTHO05D000052 1.4e-07 59.7 39 69.2
RcHm_v2.0_Chr1g0339921 Rosa chinensis HOM05D000100 ORTHO05D000052 1.4e-07 59.7 40 62.5
RcHm_v2.0_Chr1g0339981 Rosa chinensis HOM05D000100 ORTHO05D000052 1.4e-07 59.7 41 65.9
FvH4_3g10810 Fragaria vesca HOM05D000100 ORTHO05D000052 1.9e-07 59.3 41 61.0
FvH4_6g39410 Fragaria vesca HOM05D000100 ORTHO05D000052 1.9e-07 59.3 41 61.0
FAN05G3666 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.9e-07 59.3 41 61.0
FAN11G1008 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.9e-07 59.3 41 61.0
FAN14G3359 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.9e-07 59.3 41 61.0
FAN16G0330 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.9e-07 59.3 41 61.0
RcHm_v2.0_Chr1g0339941 Rosa chinensis HOM05D000100 ORTHO05D000052 1.9e-07 59.3 41 65.9
RcHm_v2.0_Chr1g0340051 Rosa chinensis HOM05D000100 ORTHO05D000052 1.9e-07 59.3 41 65.9
Dinv11349 Davidia involucrata HOM05D000100 ORTHO05D009494 2.4e-07 58.9 40 62.5
Prupe.3G184600 Prunus persica HOM05D000100 ORTHO05D000052 2.4e-07 58.9 41 63.4
MD09G1141300 Malus domestica HOM05D000100 ORTHO05D000052 3.2e-07 58.5 39 69.2
Prupe.3G185000 Prunus persica HOM05D000100 ORTHO05D000052 3.2e-07 58.5 40 67.5
RcHm_v2.0_Chr2g0153461 Rosa chinensis HOM05D000100 ORTHO05D000052 3.2e-07 58.5 39 66.7
RcHm_v2.0_Chr2g0153471 Rosa chinensis HOM05D000100 ORTHO05D000052 4.2e-07 58.2 40 65.0
Solyc07g043170.4 Solanum lycopersicum HOM05D000100 ORTHO05D000052 4.2e-07 58.2 40 67.5
Sopen07g022720 Solanum pennellii HOM05D000100 ORTHO05D000052 4.2e-07 58.2 40 67.5
Cc06_g22490 Coffea canephora HOM05D000100 ORTHO05D000052 5.4e-07 57.8 40 65.0
Nitab4.5_0000073g0500 Nicotiana tabacum HOM05D000100 ORTHO05D000052 5.4e-07 57.8 40 67.5
PGSC0003DMG400034632 Solanum tuberosum HOM05D000100 ORTHO05D000052 5.4e-07 57.8 40 67.5
FAN02G2045 Fragaria x ananassa HOM05D000100 ORTHO05D000052 7.1e-07 57.4 41 63.4
FAN05G0790 Fragaria x ananassa HOM05D000100 ORTHO05D000052 7.1e-07 57.4 41 63.4
FAN05G5614 Fragaria x ananassa HOM05D000100 ORTHO05D000052 7.1e-07 57.4 39 66.7
Hma1.2p1_0467F.1_g158690 Hydrangea macrophylla HOM05D000100 ORTHO05D000052 7.1e-07 57.4 40 60.0
MD09G1141800 Malus domestica HOM05D000100 ORTHO05D000052 7.1e-07 57.4 39 66.7
CAN.G329.3 Capsicum annuum HOM05D000100 ORTHO05D000052 9.3e-07 57.0 41 63.4
FvH4_6g39401 Fragaria vesca HOM05D000100 ORTHO05D000052 9.3e-07 57.0 41 63.4
FAN09G2155 Fragaria x ananassa HOM05D000100 ORTHO05D000052 9.3e-07 57.0 41 63.4
FAN14G2669 Fragaria x ananassa HOM05D000100 ORTHO05D000052 9.3e-07 57.0 44 56.8
Peaxi162Scf00047g02449 Petunia axillaris HOM05D000100 ORTHO05D012212 9.3e-07 57.0 40 65.0
Peaxi162Scf00789g00015 Petunia axillaris HOM05D000100 ORTHO05D000052 9.3e-07 57.0 40 67.5
RcHm_v2.0_Chr2g0153321 Rosa chinensis HOM05D000100 ORTHO05D000052 1.2e-06 56.6 40 62.5
RcHm_v2.0_Chr2g0153451 Rosa chinensis HOM05D000100 ORTHO05D000052 1.2e-06 56.6 41 61.0
Cc01_g02990 Coffea canephora HOM05D000100 ORTHO05D000052 1.6e-06 56.2 40 62.5
Oeu036760.1 Olea europaea HOM05D000100 ORTHO05D000052 1.6e-06 56.2 40 60.0
RcHm_v2.0_Chr2g0153291 Rosa chinensis HOM05D000100 ORTHO05D000052 2.1e-06 55.8 39 64.1
PGSC0003DMG400013110 Solanum tuberosum HOM05D000100 ORTHO05D000052 2.1e-06 55.8 40 65.0
Eucgr.K01350 Eucalyptus grandis HOM05D000100 ORTHO05D000052 2.7e-06 55.5 40 62.5
MD17G1129700 Malus domestica HOM05D000100 ORTHO05D000052 2.7e-06 55.5 76 42.1
RcHm_v2.0_Chr2g0153271 Rosa chinensis HOM05D000100 ORTHO05D000052 2.7e-06 55.5 40 60.0
CANSAT11G0142 Cannabis sativa HOM05D000100 ORTHO05D000052 3.5e-06 55.1 40 62.5
PGR031G1621 Punica granatum HOM05D000100 ORTHO05D000052 3.5e-06 55.1 40 60.0
Sopen07g022730 Solanum pennellii HOM05D000100 ORTHO05D000052 3.5e-06 55.1 40 60.0
Manes.07G018200 Manihot esculenta HOM05D000100 ORTHO05D000052 4.6e-06 54.7 37 62.2
Manes.07G018400 Manihot esculenta HOM05D000100 ORTHO05D000052 4.6e-06 54.7 37 62.2
MSTRG.6595 Avicennia marina HOM05D000100 ORTHO05D000052 6.0e-06 54.3 40 60.0
FvH4_6g39350 Fragaria vesca HOM05D000100 ORTHO05D000052 6.0e-06 54.3 44 54.5
Hma1.2p1_0467F.1_g158700 Hydrangea macrophylla HOM05D000100 ORTHO05D000052 6.0e-06 54.3 40 55.0
Nitab4.5_0000170g0370 Nicotiana tabacum HOM05D000100 ORTHO05D000052 6.0e-06 54.3 44 54.5
Nitab4.5_0011395g0010 Nicotiana tabacum HOM05D000100 ORTHO05D000052 6.0e-06 54.3 44 54.5
Peaxi162Scf00393g00718 Petunia axillaris HOM05D000100 ORTHO05D000052 6.0e-06 54.3 40 65.0
Potri.016G016000 Populus trichocarpa HOM05D000100 ORTHO05D000052 6.0e-06 54.3 39 61.5
QL04p063041 Quercus lobata HOM05D000100 ORTHO05D000052 6.0e-06 54.3 41 53.7
QL04p065110 Quercus lobata HOM05D000100 ORTHO05D000052 6.0e-06 54.3 40 57.5
Sabra16G0018200 Salix brachista HOM05D000100 ORTHO05D000052 6.0e-06 54.3 39 61.5
Thecc.01G174100 Theobroma cacao HOM05D000100 ORTHO05D000052 6.0e-06 54.3 41 53.7
CARHR097750 Cardamine hirsuta HOM05D000100 ORTHO05D000052 7.8e-06 53.9 41 58.5


User provided reference genes

Program Settings