Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.1e-252 876.3 500 100.0
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.8e-239 832.4 500 89.6
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.0e-237 824.3 520 86.5
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-234 816.6 530 84.5
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.1e-231 804.7 509 86.6
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 2.0e-225 785.8 500 84.2
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.3e-216 756.5 497 81.7
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.7e-214 748.8 506 79.2
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.7e-213 746.1 492 80.5
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 8.0e-211 737.3 502 79.3
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.9e-210 733.8 522 79.5
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.5e-209 733.0 501 77.8
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.2e-206 723.4 501 76.2
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.2e-206 723.4 501 77.4
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 2.3e-205 719.2 471 81.7
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 4.0e-202 708.4 499 75.4
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 7.8e-198 694.1 502 75.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 3.9e-197 691.8 504 74.6
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 5.0e-197 691.4 499 74.5
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.5e-196 689.9 497 75.5
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.9e-196 689.5 500 73.8
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.9e-196 689.5 497 75.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.6e-196 688.0 503 73.6
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.6e-195 685.3 500 73.8
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 6.2e-195 684.5 500 74.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.2e-194 681.4 503 74.0
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.2e-193 680.2 493 75.1
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.2e-193 680.2 492 75.4
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.5e-193 679.9 500 73.6
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.5e-193 679.9 503 73.8
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 3.4e-193 678.7 501 73.7
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.4e-193 678.3 502 72.5
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.3e-192 676.8 503 73.6
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.3e-192 676.8 499 74.5
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.9e-192 675.6 497 74.2
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 4.9e-192 674.9 496 73.8
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 6.4e-192 674.5 503 73.2
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.1e-191 673.7 499 72.3
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.9e-191 672.9 499 74.1
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 3.2e-191 672.2 494 74.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 3.2e-191 672.2 502 72.9
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.1e-190 669.5 502 72.5
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.7e-190 669.1 503 72.6
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.3e-189 666.8 500 71.4
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 3.0e-189 665.6 501 72.9
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.5e-188 663.3 500 71.8
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.5e-188 663.3 497 72.0
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.5e-188 663.3 483 74.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 5.6e-188 661.4 498 73.3
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 7.3e-188 661.0 500 71.8
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 2.8e-187 659.1 503 71.4
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.8e-186 656.4 499 70.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 8.9e-186 654.1 495 71.3
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.6e-185 652.5 501 69.9
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.2e-184 649.4 501 69.9
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.4e-183 646.0 501 71.1
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.4e-183 644.8 501 70.3
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 2.7e-182 642.5 524 68.7
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.6e-182 641.7 499 70.3
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.3e-181 639.4 500 71.2
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 5.1e-181 638.3 486 72.8
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 6.6e-181 637.9 494 70.4
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 4.3e-180 635.2 480 72.9
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 7.3e-180 634.4 491 70.9
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.2e-179 633.6 495 70.1
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.6e-179 633.3 497 70.0
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.8e-178 629.8 508 68.9
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.2e-178 628.2 471 73.2
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.7e-176 623.2 510 69.2
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 4.2e-175 618.6 498 66.9
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 7.1e-175 617.8 494 68.6
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 2.7e-174 615.9 500 69.8
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 4.6e-174 615.1 503 68.8
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 6.0e-174 614.8 511 66.1
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.1e-173 611.7 499 69.5
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 5.1e-173 611.7 441 75.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 2.5e-172 609.4 501 68.1
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.2e-171 607.1 487 68.0
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.8e-171 605.9 492 67.9
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.1e-170 604.0 509 68.0
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.8e-170 603.2 510 67.8
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 9.0e-170 600.9 508 66.1
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.2e-169 600.5 497 65.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 4.4e-169 598.6 488 66.6
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.2e-168 596.3 508 65.4
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.9e-168 595.9 507 65.7
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 4.9e-168 595.1 508 65.2
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 6.4e-168 594.7 505 65.0
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.4e-167 593.6 488 67.0
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 2.4e-167 592.8 487 66.3
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.1e-165 585.1 496 64.1
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.5e-164 582.8 420 75.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 2.5e-164 582.8 503 62.8
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 5.6e-164 581.6 491 65.8
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 5.3e-162 575.1 503 62.4
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-161 573.9 485 64.7
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 3.4e-161 572.4 485 64.5
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.4e-161 572.4 501 62.5
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.7e-160 570.1 487 64.5
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 3.0e-157 559.3 471 64.5
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 2.5e-156 556.2 498 64.1
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.1e-155 553.1 439 69.2
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.9e-148 530.0 492 62.4
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.1e-143 514.2 380 72.9
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.5e-143 513.1 532 59.2
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 9.3e-143 511.1 480 61.7
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-140 504.2 357 75.9
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.8e-138 496.9 488 63.5
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.4e-135 487.3 481 57.2
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 6.3e-131 471.9 486 58.4
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 2.4e-130 469.9 497 55.7
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.1e-119 434.5 394 60.7
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.6e-118 430.6 453 56.7
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.7e-115 420.6 373 65.4
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.6e-113 413.3 403 58.3
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.5e-111 406.8 393 61.1
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.0e-109 401.4 490 53.7
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 7.0e-98 362.1 381 58.3
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 7.0e-98 362.1 381 58.3
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.7e-97 358.6 219 87.2
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.6e-94 350.9 206 84.0
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 2.7e-89 333.6 417 48.2
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 6.6e-88 328.9 355 56.1
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 4.4e-84 316.2 424 47.6
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.7e-83 314.3 323 54.2
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 5.6e-79 299.3 253 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.9e-75 287.0 393 44.5
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.9e-67 259.6 221 65.2
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.4e-60 236.9 230 62.6
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.8e-60 236.1 408 40.2
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 9.3e-58 228.8 276 52.2
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.2e-52 211.8 430 35.8
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.9e-52 208.8 202 61.9
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.0e-48 198.7 400 35.5
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 8.7e-48 195.7 132 78.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-44 184.9 96 92.7
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 2.9e-43 180.6 289 43.6
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 6.7e-40 169.5 91 91.2
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.5e-36 156.8 106 67.0
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.9e-32 143.7 87 79.3
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.7e-25 120.9 144 52.1
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 5.1e-24 116.7 185 43.8
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 8.7e-24 115.9 94 60.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.6e-20 104.4 122 53.3
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.5e-15 87.8 66 71.2
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.0e-07 61.6 190 33.2
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 3.3e-07 60.8 96 34.4
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.8e-06 57.8 50 70.0
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 4.8e-06 57.0 47 66.0


User provided reference genes

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