Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1801.9 921 100.0
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1719.5 921 95.1
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1718.4 935 93.9
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1701.0 935 93.6
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1646.7 1085 80.7
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1557.0 922 85.5
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1522.7 922 83.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1402.1 923 77.2
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1383.2 996 73.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1374.0 915 77.0
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1360.1 924 75.9
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1352.4 924 73.9
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1334.7 911 75.1
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1333.9 921 75.1
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1328.2 915 74.6
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1326.6 926 73.5
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1325.8 921 72.7
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1324.3 919 73.8
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1321.2 924 74.4
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1320.4 931 73.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1310.8 923 72.7
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1308.9 918 73.0
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1301.2 935 72.0
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1298.1 937 72.4
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1291.2 963 69.4
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1289.6 847 77.9
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1289.6 918 72.3
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1285.8 918 72.0
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1280.0 924 71.8
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1280.0 935 71.3
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1278.8 920 71.4
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1276.5 920 71.5
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1275.4 1080 64.9
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1268.4 924 71.0
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1267.7 922 71.0
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1256.1 923 70.5
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1251.9 923 68.9
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1242.3 918 71.0
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1229.9 914 70.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1225.3 922 67.9
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1212.6 873 71.2
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1212.6 940 68.2
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1211.8 871 71.2
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1200.3 932 68.5
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1194.5 910 68.5
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1190.3 910 68.1
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1186.0 911 67.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1178.3 922 65.6
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1170.2 920 65.3
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1163.7 926 66.3
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1161.7 961 63.6
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 0.0e+00 1145.2 771 77.0
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1144.0 912 64.7
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1136.3 911 66.6
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1134.4 915 64.8
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1134.0 913 64.2
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1133.6 921 64.5
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1132.5 915 64.5
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 0.0e+00 1132.1 930 66.6
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1131.7 921 64.2
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1131.3 910 65.7
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1130.9 870 67.1
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1125.5 917 64.6
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1125.2 921 64.1
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1123.2 916 63.0
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1121.3 915 64.2
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1119.0 906 66.1
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1118.6 917 64.2
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1109.0 917 63.6
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 0.0e+00 1104.7 922 63.3
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1104.7 921 62.4
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1099.7 914 63.2
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1093.6 983 60.2
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 3.7e-310 1068.1 915 61.9
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.8e-309 1065.8 760 71.1
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.9e-307 1057.7 871 63.8
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 7.1e-306 1053.9 943 60.1
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 5.6e-303 1044.3 917 60.0
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 2.8e-302 1042.0 915 60.5
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 7.6e-300 1033.9 869 61.7
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 7.6e-300 1033.9 1017 56.0
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.0e-299 1033.5 932 59.3
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 2.9e-299 1031.9 1157 51.9
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.7e-297 1025.4 919 60.7
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 6.3e-294 1014.2 730 73.7
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.0e-283 980.3 908 57.2
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 2.0e-276 956.1 732 68.4
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 5.5e-274 948.0 930 56.0
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 9.4e-274 947.2 955 53.8
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.4e-269 933.3 640 75.6
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 3.6e-265 918.7 928 55.0
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 4.2e-258 895.2 599 75.3
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 2.7e-257 892.5 642 69.3
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.5e-252 875.5 726 62.5
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 3.8e-251 872.1 773 59.9
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 2.0e-215 753.4 571 66.9
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 3.8e-214 749.2 514 76.3
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 3.3e-210 736.1 565 68.1
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 9.3e-205 718.0 472 82.8
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 2.5e-194 683.3 487 71.3
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 2.1e-180 637.1 432 75.9
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.2e-175 621.3 533 62.5
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.2e-169 600.5 933 41.8
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 8.8e-163 578.6 915 42.0
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 3.3e-162 576.6 436 69.5
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 5.2e-155 552.7 411 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.2e-148 531.6 911 38.9
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 2.2e-142 510.8 901 37.8
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 2.7e-140 503.8 605 49.3
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.0e-139 501.9 923 38.0
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 4.0e-131 473.4 305 81.0
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.1e-125 455.3 633 43.8
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 7.3e-117 426.0 349 62.5
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 7.1e-104 382.9 244 80.7
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 4.6e-103 380.2 572 41.1
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 3.0e-94 350.9 228 78.9
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 6.6e-94 349.7 280 65.7
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.5e-93 347.8 688 36.6
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 1.6e-92 345.1 283 70.3
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 3.4e-82 310.8 260 62.7
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.5e-77 295.4 221 70.1
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.4e-75 288.9 628 36.0
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.4e-56 225.7 151 71.5
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 1.2e-55 222.6 152 72.4
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 6.5e-49 200.3 135 75.6
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 2.7e-47 194.9 157 59.9
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 6.1e-39 167.2 103 77.7
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.8e-38 165.6 133 61.7
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 6.3e-36 157.1 118 64.4
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 2.0e-34 152.1 195 45.6
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 8.3e-28 130.2 187 40.6
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 5.3e-27 127.5 150 54.7
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-24 119.4 120 53.3
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 5.5e-24 117.5 152 46.7
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 9.4e-24 116.7 224 34.8
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 3.0e-22 111.7 84 72.6
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.8e-22 110.5 75 64.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 9.8e-21 106.7 105 58.1
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.3e-20 106.3 100 65.0
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.2e-20 105.5 65 81.5
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 2.9e-17 95.1 58 72.4
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 7.5e-13 80.5 131 41.2
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 9.8e-13 80.1 131 41.2
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 4.9e-12 77.8 103 52.4
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 8.3e-12 77.0 112 42.0
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 9.2e-11 73.6 73 52.1
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 9.2e-11 73.6 239 27.6
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.3e-09 68.9 67 50.7
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 5.0e-09 67.8 85 43.5
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 2.1e-07 62.4 401 23.9
TPR.G31053 Trifolium pratense HOM05D033735 ORTHO05D410983 6.1e-07 60.8 200 27.5
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 8.9e-06 57.0 85 38.8


User provided reference genes

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