Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1533.5 824 100.0
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1475.3 824 95.6
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1473.8 824 95.5
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1468.0 824 95.3
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1464.9 824 95.1
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1463.7 824 95.0
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1349.7 823 86.3
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1323.5 824 84.2
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1294.6 828 85.0
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1251.1 842 78.7
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1239.2 823 80.0
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1239.2 817 78.7
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1238.8 817 79.4
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1232.6 817 78.5
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1231.5 836 78.8
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1229.5 839 79.0
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1224.2 828 78.5
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1219.9 822 78.8
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1217.2 827 77.5
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1215.7 788 80.6
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1214.9 831 77.5
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1204.9 815 79.8
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1204.5 820 76.6
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1203.3 825 77.6
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1203.0 831 77.9
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1201.4 828 77.8
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1196.8 831 77.7
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1194.9 828 77.7
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1194.5 832 76.3
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1192.9 828 77.7
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1191.4 830 77.7
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1191.0 838 76.8
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1189.5 827 76.8
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1187.9 836 75.0
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1184.1 818 76.8
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1180.6 832 76.4
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1179.5 830 77.6
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1178.7 832 77.2
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1174.5 832 76.9
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1172.9 939 70.2
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1171.4 832 76.9
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1167.9 825 76.0
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1166.8 826 76.4
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1166.4 831 73.3
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1164.8 821 74.4
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1154.8 821 76.6
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1150.6 835 72.2
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 835 72.3
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1147.1 835 72.1
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1146.0 815 75.3
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1142.5 790 74.7
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 858 73.9
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1132.5 835 70.9
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1132.5 822 74.6
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1131.7 812 71.8
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1131.3 833 72.7
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1129.8 829 74.4
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1128.6 826 72.4
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 825 74.3
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1124.4 833 71.9
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1122.1 763 76.5
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1121.3 831 73.5
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1119.8 757 76.6
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1119.0 831 70.6
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1113.2 791 72.9
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1110.5 841 70.0
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1108.6 791 73.1
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 831 70.6
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1104.7 825 71.6
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 826 70.1
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 830 69.8
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 838 69.6
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 825 70.3
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 818 70.5
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1092.4 818 70.4
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1092.4 826 71.2
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1090.9 817 70.4
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1090.5 824 70.5
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1087.8 817 70.3
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1087.4 889 66.7
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1085.9 831 69.7
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1085.5 826 70.1
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 820 70.2
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1082.0 828 69.4
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1078.9 820 70.1
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1077.8 820 70.0
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 5.1e-311 1070.8 817 69.4
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 7.3e-310 1067.0 829 67.2
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 2.2e-306 1055.4 901 63.6
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 3.2e-305 1051.6 818 66.5
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 1.7e-303 1045.8 827 67.7
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 6.2e-301 1037.3 828 66.5
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.9e-298 1028.5 671 76.6
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 6.4e-298 1027.3 819 65.0
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 1.2e-296 1023.1 731 71.1
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 9.9e-291 1003.4 832 66.2
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.1e-289 1000.0 647 77.7
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 9.2e-289 996.9 647 78.1
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 5.2e-284 981.1 754 68.4
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.2e-283 979.9 821 63.3
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 2.0e-283 979.2 704 70.5
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 4.2e-281 971.5 754 68.7
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 2.8e-277 958.7 639 76.5
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 8.1e-277 957.2 916 59.6
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 3.8e-274 948.3 808 62.9
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 4.3e-270 934.9 622 74.6
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 6.9e-268 927.5 791 60.1
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 7.1e-265 917.5 571 80.2
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 3.0e-255 885.6 817 56.1
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 9.7e-254 880.6 817 55.7
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 8.8e-247 857.4 785 56.1
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.6e-227 792.7 835 57.6
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 4.2e-225 785.4 789 52.7
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 9.4e-225 784.3 782 57.3
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 7.5e-206 721.5 427 85.5
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 3.3e-169 599.7 479 67.4
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.5e-161 574.3 439 70.8
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 6.0e-139 499.2 319 79.3
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 9.4e-132 475.3 759 38.1
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.2e-128 464.2 304 74.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.4e-124 451.4 285 79.3
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 1.1e-119 435.3 788 34.1
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.2e-114 416.4 378 59.8
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 7.0e-111 406.0 359 69.1
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 5.4e-95 353.2 855 30.3
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.6e-83 313.9 278 65.5
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.3e-69 268.1 381 50.1
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 6.2e-59 233.4 225 60.9
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 3.5e-46 191.0 131 70.2
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 6.0e-46 190.3 140 69.3
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.1e-42 179.5 142 69.0
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 9.0e-42 176.4 125 70.4
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.3e-37 161.8 156 57.1
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.0e-37 161.4 156 57.1
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 7.6e-33 146.7 121 67.8
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.8e-32 144.4 158 52.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 3.6e-14 84.7 70 61.4
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.1e-10 73.2 133 40.6


User provided reference genes

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