Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 1.1e-41 172.9 93 100.0
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 3.1e-31 138.3 94 84.0
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.1e-31 138.3 94 84.0
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.1e-31 138.3 94 84.0
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 3.2e-20 101.7 79 69.6
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 4.1e-20 101.3 80 68.8
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 1.2e-19 99.8 82 68.3
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 6.6e-18 94.0 66 71.2
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 6.6e-18 94.0 66 71.2
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 8.6e-18 93.6 65 70.8
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 1.9e-17 92.4 68 63.2
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 1.6e-16 89.4 67 62.7
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 1.4e-15 86.3 69 68.1
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.4e-15 85.5 64 65.6
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 4.0e-15 84.7 69 66.7
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 6.8e-15 84.0 69 60.9
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 2.0e-14 82.4 70 67.1
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 4.4e-14 81.3 75 56.0
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 5.8e-14 80.9 69 63.8
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 5.8e-14 80.9 69 63.8
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.3e-13 79.7 68 61.8
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 2.2e-13 79.0 71 62.0
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 2.9e-13 78.6 55 70.9
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.9e-13 78.6 67 64.2
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.9e-13 78.6 84 51.2
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 3.8e-13 78.2 60 66.7
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 3.8e-13 78.2 75 57.3
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 4.9e-13 77.8 69 58.0
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 6.4e-13 77.4 74 58.1
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.1e-12 76.6 75 57.3
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 1.4e-12 76.3 83 54.2
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.4e-12 76.3 75 57.3
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.4e-12 76.3 75 57.3
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 1.9e-12 75.9 84 52.4
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.4e-12 75.5 68 60.3
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.4e-12 75.5 68 60.3
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.2e-12 74.7 68 60.3
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 7.1e-12 73.9 49 71.4
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 7.1e-12 73.9 66 62.1
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 9.3e-12 73.6 47 68.1
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.6e-11 72.8 69 53.6
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.6e-11 72.8 78 48.7
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.7e-11 72.0 55 67.3
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.7e-11 72.0 69 59.4
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 4.6e-11 71.2 88 50.0
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.0e-10 70.1 81 45.7
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 1.3e-10 69.7 49 73.5
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.3e-10 68.9 71 53.5
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 2.3e-10 68.9 54 63.0
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.0e-10 68.6 71 52.1
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.0e-10 68.6 71 53.5
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 3.0e-10 68.6 49 63.3
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 3.9e-10 68.2 68 57.4
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 3.9e-10 68.2 68 57.4
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 6.6e-10 67.4 65 52.3
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 6.6e-10 67.4 66 60.6
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 1.1e-09 66.6 49 67.3
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 1.1e-09 66.6 49 67.3
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 1.5e-09 66.2 69 49.3
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 2.5e-09 65.5 49 67.3
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 3.3e-09 65.1 74 47.3
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 4.3e-09 64.7 64 54.7
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 5.6e-09 64.3 85 43.5
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 5.6e-09 64.3 69 53.6
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 7.3e-09 63.9 56 62.5
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 7.3e-09 63.9 81 48.1
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 1.3e-08 63.2 66 51.5
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 1.3e-08 63.2 57 57.9
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 1.3e-08 63.2 53 60.4
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.6e-08 62.8 63 52.4
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 1.6e-08 62.8 58 58.6
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 1.6e-08 62.8 76 48.7
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 2.1e-08 62.4 72 50.0
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 4.8e-08 61.2 46 65.2
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 4.8e-08 61.2 82 45.1
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 6.2e-08 60.8 84 46.4
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 8.1e-08 60.5 54 63.0
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 8.1e-08 60.5 87 44.8
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 1.1e-07 60.1 61 55.7
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 1.1e-07 60.1 50 56.0
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.4e-07 59.7 87 44.8
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 1.8e-07 59.3 115 41.7
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 1.8e-07 59.3 41 63.4
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 2.4e-07 58.9 52 59.6
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.4e-07 58.9 49 63.3
FAN09G3070 Fragaria x ananassa HOM05D006911 ORTHO05D006663 2.4e-07 58.9 51 72.5
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 2.4e-07 58.9 67 50.7
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 2.4e-07 58.9 69 50.7
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 3.1e-07 58.5 69 46.4
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 5.3e-07 57.8 84 46.4
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 5.3e-07 57.8 67 47.8
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 6.9e-07 57.4 58 56.9
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 1.5e-06 56.2 64 51.6
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 1.5e-06 56.2 45 66.7
ATR0585G110 Amborella trichopoda HOM05D006911 ORTHO05D006663 2.0e-06 55.8 67 46.3
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 2.0e-06 55.8 86 41.9
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 2.0e-06 55.8 66 43.9
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 3.4e-06 55.1 67 46.3
HPP92_024568 Vanilla planifolia HOM05D006911 ORTHO05D006663 3.4e-06 55.1 50 54.0
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 7.6e-06 53.9 66 47.0
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 7.6e-06 53.9 83 42.2


User provided reference genes

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