Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 1.8e-109 399.8 296 100.0
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 4.2e-82 308.9 320 69.1
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 4.6e-81 305.4 310 74.2
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 2.5e-79 299.7 319 72.4
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 2.7e-73 279.6 317 73.2
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 2.6e-68 263.1 322 51.6
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 9.6e-63 244.6 315 57.1
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 9.0e-61 238.0 319 55.8
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 4.3e-55 219.2 292 49.7
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.1e-53 214.5 294 59.9
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 2.2e-51 206.8 289 55.4
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 2.9e-51 206.5 308 55.2
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.1e-50 204.5 300 50.7
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.9e-50 203.8 289 57.4
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 2.7e-49 199.9 293 58.0
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 4.6e-49 199.1 290 55.9
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 6.1e-49 198.7 296 57.8
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 7.9e-49 198.4 302 57.3
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 7.9e-49 198.4 304 65.5
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 8.8e-48 194.9 287 52.3
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 1.5e-47 194.1 294 55.8
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 1.5e-47 194.1 295 62.0
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 2.6e-47 193.4 288 51.7
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 3.3e-47 193.0 295 56.6
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 4.4e-47 192.6 291 51.2
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 5.7e-47 192.2 311 61.7
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 5.7e-47 192.2 292 54.1
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 2.2e-46 190.3 291 54.0
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 3.7e-46 189.5 309 57.3
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 6.3e-46 188.7 332 56.6
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 1.1e-45 188.0 328 49.1
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.8e-45 187.2 287 45.6
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 3.1e-45 186.4 295 60.0
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.5e-44 184.1 287 46.3
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 2.0e-44 183.7 306 58.8
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 2.0e-44 183.7 119 73.9
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 5.9e-44 182.2 295 60.7
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 7.7e-44 181.8 302 60.3
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 1.0e-43 181.4 292 53.4
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 1.0e-43 181.4 288 49.7
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 2.2e-43 180.3 297 54.9
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 2.9e-43 179.9 345 53.3
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.8e-43 179.5 293 49.5
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.0e-43 179.1 121 69.4
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 8.5e-43 178.3 118 68.6
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 8.5e-43 178.3 293 59.7
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.4e-42 177.6 121 68.6
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 1.9e-42 177.2 286 51.4
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 1.9e-42 177.2 302 61.6
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.5e-42 176.8 301 47.5
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 5.5e-42 175.6 124 67.7
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 5.5e-42 175.6 300 49.0
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 5.5e-42 175.6 293 53.6
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 5.5e-42 175.6 291 62.5
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 1.6e-41 174.1 286 54.9
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 2.7e-41 173.3 124 66.9
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 3.6e-41 172.9 121 70.2
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 3.6e-41 172.9 154 57.8
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 4.7e-41 172.6 308 63.3
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 6.1e-41 172.2 144 60.4
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 6.1e-41 172.2 289 50.2
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 7.9e-41 171.8 121 66.1
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 1.0e-40 171.4 303 53.1
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 1.0e-40 171.4 341 52.5
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.0e-40 171.4 326 44.5
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 1.8e-40 170.6 324 49.7
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 1.8e-40 170.6 324 52.5
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 1.8e-40 170.6 121 67.8
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.8e-40 170.6 115 69.6
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 3.0e-40 169.9 196 61.2
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 3.9e-40 169.5 289 49.8
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 6.7e-40 168.7 115 68.7
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.1e-39 167.9 287 49.8
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 1.1e-39 167.9 116 70.7
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 2.0e-39 167.2 120 68.3
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 2.0e-39 167.2 286 38.8
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 3.3e-39 166.4 117 67.5
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.4e-39 166.0 128 64.8
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 5.7e-39 165.6 124 62.1
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 7.4e-39 165.2 196 65.3
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 9.7e-39 164.9 188 58.0
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 1.3e-38 164.5 331 58.0
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 1.7e-38 164.1 124 63.7
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 1.7e-38 164.1 299 54.8
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 1.7e-38 164.1 327 56.3
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 2.2e-38 163.7 124 63.7
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.2e-38 163.7 128 63.3
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.8e-38 163.3 114 66.7
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 3.7e-38 162.9 293 47.1
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 3.7e-38 162.9 120 64.2
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 4.8e-38 162.5 112 67.9
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 4.8e-38 162.5 338 49.7
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 6.3e-38 162.2 124 62.1
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 1.4e-37 161.0 120 67.5
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.4e-37 161.0 128 62.5
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 1.8e-37 160.6 292 52.4
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 1.8e-37 160.6 313 53.4
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.4e-37 160.2 128 62.5
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 3.1e-37 159.8 118 65.3
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 5.3e-37 159.1 301 54.5
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 7.0e-37 158.7 148 64.9
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 7.0e-37 158.7 114 64.0
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 1.2e-36 157.9 292 45.2
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 1.2e-36 157.9 116 62.1
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 2.0e-36 157.1 127 63.8
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 2.0e-36 157.1 127 63.8
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 2.0e-36 157.1 127 63.8
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 2.0e-36 157.1 127 63.8
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 2.0e-36 157.1 127 63.8
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 2.0e-36 157.1 124 64.5
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 7.7e-36 155.2 276 44.9
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 1.0e-35 154.8 292 51.7
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 1.0e-35 154.8 292 51.7
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 1.0e-35 154.8 292 51.7
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 1.0e-35 154.8 292 51.7
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 1.0e-35 154.8 135 57.8
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 1.0e-35 154.8 144 53.5
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 1.3e-35 154.5 304 53.6
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 1.3e-35 154.5 115 61.7
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 1.3e-35 154.5 150 54.7
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 3.8e-35 152.9 263 44.5
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 6.5e-35 152.1 193 49.2
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 6.5e-35 152.1 110 62.7
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 1.1e-34 151.4 384 40.9
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 2.5e-34 150.2 151 63.6
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 2.5e-34 150.2 115 64.3
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 2.5e-34 150.2 108 65.7
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 3.2e-34 149.8 326 45.7
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 3.2e-34 149.8 114 60.5
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.6e-33 147.5 309 58.3
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 2.7e-33 146.7 198 49.5
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.0e-32 144.8 299 42.8
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 1.4e-32 144.4 128 57.0
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 6.7e-32 142.1 123 61.0
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 6.7e-32 142.1 120 56.7
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 8.8e-32 141.7 109 61.5
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 8.8e-32 141.7 121 62.8
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.2e-31 141.4 291 43.0
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 1.5e-31 141.0 117 56.4
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 2.0e-31 140.6 128 56.2
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 3.3e-31 139.8 118 61.9
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 3.3e-31 139.8 111 62.2
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 2.2e-30 137.1 123 56.9
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 4.8e-30 136.0 113 54.9
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 5.3e-29 132.5 110 57.3
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 9.1e-29 131.7 121 55.4
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 2.0e-28 130.6 97 70.1
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.7e-28 130.2 116 56.9
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 3.5e-28 129.8 114 56.1
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 7.7e-28 128.6 109 56.9
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 8.5e-27 125.2 111 63.1
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 8.5e-27 125.2 116 57.8
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 8.5e-27 125.2 114 58.8
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 1.1e-26 124.8 116 57.8
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 1.1e-26 124.8 116 57.8
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 1.1e-26 124.8 116 57.8
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 4.2e-26 122.9 306 38.6
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 1.2e-25 121.3 103 57.3
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.6e-25 120.9 114 53.5
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.6e-25 120.9 121 52.1
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 2.1e-25 120.6 112 51.8
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 2.1e-25 120.6 115 57.4
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 3.0e-24 116.7 121 52.9
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 9.8e-23 111.7 108 53.7
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 2.2e-22 110.5 127 48.8
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.4e-21 107.8 91 53.8
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 2.3e-19 100.5 110 51.8
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 1.1e-18 98.2 106 46.2
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 3.6e-17 93.2 115 46.1
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 1.0e-16 91.7 125 43.2
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 2.0e-15 87.4 105 43.8
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 2.6e-15 87.0 109 43.1
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 2.2e-14 84.0 108 43.5
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 4.1e-13 79.7 200 56.0
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.7e-12 77.0 120 40.0
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 8.6e-11 72.0 72 51.4
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 2.8e-09 67.0 118 38.1
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 3.6e-09 66.6 109 36.7
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 3.0e-08 63.5 33 66.7
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 6.8e-08 62.4 114 32.5
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 4.4e-07 59.7 44 65.9


User provided reference genes

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