Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 0.0e+00 2393.2 1231 100.0
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 0.0e+00 1856.6 1244 78.6
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 0.0e+00 1845.1 1244 78.2
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 0.0e+00 1838.2 1243 77.8
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 0.0e+00 1821.6 1318 74.8
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 0.0e+00 1350.1 1315 58.9
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 0.0e+00 1171.8 1304 55.1
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 7.9e-236 821.6 1339 42.9
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 5.0e-206 722.6 997 45.6
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 1.5e-205 721.1 845 54.1
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 3.3e-205 719.9 1279 40.3
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 6.6e-198 695.7 1314 39.7
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.5e-197 694.5 1285 39.8
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 9.5e-189 665.2 1365 40.5
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 1.7e-185 654.4 1290 39.1
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 9.0e-171 605.5 1318 36.7
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 8.4e-169 599.0 1324 37.4
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 6.0e-167 592.8 1256 36.5
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 6.2e-164 582.8 1314 36.6
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.1e-163 582.0 1303 36.1
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 2.5e-157 560.8 1259 36.4
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 8.1e-156 555.8 999 38.9
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 6.9e-155 552.7 868 41.0
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 4.6e-143 513.5 1038 35.5
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 1.3e-142 511.9 992 39.1
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 2.2e-140 504.6 1323 34.8
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.9e-136 491.5 1183 34.9
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 5.7e-125 453.4 1048 34.8
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 1.0e-121 442.6 1041 35.1
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 2.8e-116 424.5 1287 31.2
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 5.0e-113 413.7 1316 32.9
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 2.9e-105 387.9 1290 29.2
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 6.1e-103 380.2 1256 30.1
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 4.0e-102 377.5 962 31.8
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 8.3e-100 369.8 1068 34.5
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.2e-98 365.9 237 81.0
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 1.6e-98 365.5 1446 28.1
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 5.9e-98 363.6 1303 31.7
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 6.6e-97 360.1 1289 29.0
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 2.5e-96 358.2 1221 32.8
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 1.2e-95 355.9 1234 30.7
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.4e-94 352.4 1317 28.7
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 1.9e-88 332.0 1285 28.5
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 1.9e-88 332.0 1173 31.1
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 1.2e-87 329.3 1285 28.9
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 6.1e-87 327.0 1247 32.5
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 8.9e-86 323.2 1267 29.8
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 2.0e-85 322.0 1299 28.0
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 2.4e-83 315.1 1180 30.0
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 3.2e-83 314.7 1179 30.7
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 5.4e-83 313.9 1336 30.2
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 1.6e-82 312.4 1250 29.8
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 7.8e-82 310.1 1286 27.7
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.1e-78 299.7 1271 29.0
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 1.1e-78 299.7 1322 29.1
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.1e-75 289.7 1282 29.6
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 3.0e-73 281.6 1299 28.2
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 8.9e-70 270.0 1249 27.9
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 8.9e-70 270.0 1240 29.4
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 2.6e-69 268.5 1055 28.6
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.3e-68 266.2 198 74.7
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 1.4e-67 262.7 1280 26.1
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.1e-66 258.8 1302 27.4
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 4.6e-66 257.7 1282 28.8
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 1.0e-65 256.5 1320 28.3
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 4.9e-60 237.7 1349 28.0
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 1.7e-57 229.2 1272 26.8
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 2.0e-53 215.7 762 29.8
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 3.5e-50 204.9 1271 26.7
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 3.1e-46 191.8 1318 24.4
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 1.2e-45 189.9 1416 24.0
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.9e-43 182.6 1285 24.5
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 4.3e-40 171.4 1298 23.0
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 2.5e-35 155.6 681 26.4
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 4.2e-35 154.8 1298 24.2
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 2.7e-34 152.1 1244 26.0
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 6.0e-34 151.0 1280 24.5
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 7.9e-34 150.6 1279 23.8
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 6.7e-33 147.5 827 25.0
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 3.3e-32 145.2 1277 23.8
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.5e-29 136.3 1292 23.5
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 1.7e-28 132.9 1262 21.6
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 2.2e-28 132.5 195 44.6
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 2.5e-24 119.0 1127 23.3
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 1.4e-22 113.2 1041 23.2
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 1.4e-22 113.2 175 42.9
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 7.7e-21 107.5 308 31.2
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 1.7e-20 106.3 1079 23.0
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 6.5e-20 104.4 170 40.6
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.0e-17 97.1 100 58.0
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 1.0e-17 97.1 371 31.3
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.4e-17 96.7 184 37.0
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 2.3e-17 95.9 176 39.2
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 3.0e-17 95.5 1128 22.7
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 5.1e-17 94.7 1161 23.0
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.7e-15 89.7 151 39.1
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 6.9e-14 84.3 521 24.8
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 1.9e-11 76.3 115 43.5
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 3.2e-11 75.5 173 34.1
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 2.7e-10 72.4 93 43.0
HPP92_005185 Vanilla planifolia HOM05D006994 ORTHO05D008229 1.8e-09 69.7 265 25.7
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 3.0e-09 68.9 56 60.7
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 5.7e-08 64.7 95 40.0
THA.LOC104804894 Tarenaya hassleriana HOM05D014107 ORTHO05D008229 5.7e-08 64.7 233 27.5
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 7.4e-08 64.3 88 42.0
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 1.7e-07 63.2 202 31.7
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 4.8e-07 61.6 78 42.3
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 6.3e-07 61.2 86 38.4
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 6.3e-07 61.2 86 38.4
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 1.8e-06 59.7 172 30.2
A09p51320 Brassica napus HOM05D014107 ORTHO05D003056 4.1e-06 58.5 151 31.1
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 5.3e-06 58.2 75 41.3
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 7.0e-06 57.8 62 48.4


User provided reference genes

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