Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.5e-170 602.1 315 100.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.6e-156 554.7 314 93.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.3e-153 546.6 314 92.4
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.3e-153 546.6 314 92.0
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.8e-153 545.4 314 90.4
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-143 513.1 331 84.9
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.6e-135 485.7 318 78.3
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 8.5e-134 480.7 301 84.7
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 3.6e-132 475.3 318 79.9
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.3e-126 456.8 318 75.2
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 6.8e-123 444.5 309 75.1
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 7.5e-122 441.0 313 71.9
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 7.5e-122 441.0 300 78.7
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 7.5e-122 441.0 264 86.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.8e-121 439.1 243 86.0
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.8e-121 439.1 301 76.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 6.3e-121 438.0 242 86.0
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.4e-120 436.8 242 86.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.8e-120 436.4 244 84.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.8e-120 436.4 289 74.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.4e-120 436.0 305 72.5
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.4e-120 436.0 329 70.5
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.4e-120 434.9 318 69.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 5.4e-120 434.9 282 77.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 7.0e-120 434.5 242 86.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 7.0e-120 434.5 306 73.2
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.2e-119 433.7 240 85.8
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.2e-119 433.7 242 85.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.6e-119 433.3 296 73.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.6e-119 433.3 302 72.5
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.6e-119 433.3 242 86.0
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.0e-119 433.0 303 70.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.7e-119 432.6 242 82.6
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 4.5e-119 431.8 244 82.4
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 5.9e-119 431.4 319 70.5
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.9e-119 431.4 242 84.3
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 5.9e-119 431.4 242 84.3
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 5.9e-119 431.4 242 84.3
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.7e-118 429.9 283 74.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.7e-118 429.9 242 82.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-118 429.9 242 83.9
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.3e-118 429.5 244 82.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.3e-118 429.5 245 83.3
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.9e-118 429.1 296 72.3
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 3.8e-118 428.7 242 83.9
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 5.0e-118 428.3 280 76.4
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 5.0e-118 428.3 304 71.7
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 6.5e-118 427.9 295 72.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.1e-117 427.2 272 75.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-117 426.8 244 81.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.5e-117 426.8 242 81.8
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.5e-117 426.8 243 81.5
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.5e-117 426.8 242 83.5
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.5e-117 426.8 295 72.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.9e-117 426.4 242 84.3
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.5e-117 426.0 242 83.9
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.2e-117 425.6 287 74.2
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 4.2e-117 425.2 283 74.9
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.5e-117 424.9 301 71.4
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 5.5e-117 424.9 298 72.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 7.2e-117 424.5 308 72.1
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 9.5e-117 424.1 245 82.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.2e-116 423.7 245 81.2
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 3.6e-116 422.2 308 70.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 4.7e-116 421.8 242 82.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.0e-115 420.6 297 72.1
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.3e-115 419.5 242 79.8
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.3e-115 419.5 242 80.6
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.3e-115 419.5 294 72.4
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.3e-115 419.5 304 69.4
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.0e-115 419.1 262 76.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 6.8e-115 417.9 312 68.9
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 8.8e-115 417.5 242 83.1
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 8.8e-115 417.5 242 82.2
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.6e-114 416.0 247 78.9
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.4e-114 415.6 242 78.5
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 9.8e-114 414.1 275 73.1
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 2.2e-113 412.9 242 81.8
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.8e-113 412.5 242 81.8
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.8e-112 409.8 218 92.7
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 3.1e-112 409.1 242 79.8
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 7.0e-112 407.9 247 77.3
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.9e-110 402.5 282 73.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 6.6e-110 401.4 248 76.2
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.5e-109 400.2 242 79.3
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 5.6e-109 398.3 246 76.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.8e-108 396.0 247 75.7
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 4.7e-108 395.2 242 75.6
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.7e-108 395.2 242 77.7
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 8.0e-108 394.4 242 75.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 8.0e-108 394.4 326 64.7
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.3e-107 392.9 242 76.9
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 3.4e-106 389.0 247 74.9
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.9e-105 386.0 257 75.1
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.2e-103 380.6 367 57.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 5.6e-101 371.7 242 75.2
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 6.2e-100 368.2 242 73.1
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.1e-99 367.5 429 50.3
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.8e-99 364.8 239 74.9
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.9e-97 359.4 212 77.4
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 9.2e-96 354.4 241 72.6
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.3e-94 350.5 273 63.4
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 3.9e-94 349.0 249 69.9
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.8e-92 342.8 279 65.9
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.1e-91 340.9 212 80.7
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.1e-91 339.3 242 70.2
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 7.5e-90 334.7 249 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 6.4e-89 331.6 294 55.1
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.7e-86 323.6 241 62.7
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 3.0e-86 322.8 186 82.3
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-80 302.8 231 66.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 8.1e-76 288.1 167 82.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.0e-75 285.8 212 62.3
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 5.1e-70 268.9 242 51.7
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-68 263.8 224 62.1
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.1e-67 261.2 181 70.2
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.0e-67 259.2 159 78.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.6e-66 256.5 169 71.6
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.2e-65 253.4 242 50.0
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 3.2e-64 249.6 141 86.5
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 5.4e-64 248.8 251 51.4
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.3e-61 239.6 192 65.1
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.1e-60 236.9 299 49.5
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 8.1e-60 235.0 206 61.2
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.9e-57 226.5 237 43.9
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.9e-56 223.8 137 78.8
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 9.3e-56 221.5 137 77.4
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 6.2e-52 208.8 136 71.3
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 6.9e-51 205.3 238 44.5
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.5e-50 202.6 116 81.0
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 5.8e-50 202.2 126 78.6
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.8e-49 199.5 149 64.4
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 5.5e-48 195.7 136 69.9
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 5.5e-48 195.7 136 69.9
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.1e-47 193.7 110 80.0
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.7e-46 188.7 111 74.8
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.7e-46 188.7 100 86.0
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 4.3e-45 186.0 110 81.8
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-43 181.0 101 81.2
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.8e-43 180.6 164 57.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 6.5e-41 172.2 239 37.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.2e-40 168.7 92 84.8
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.9e-37 160.6 236 39.0
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.2e-36 157.1 99 70.7
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 4.1e-35 152.9 262 36.6
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 7.7e-34 148.7 77 87.0
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.0e-33 148.3 82 79.3
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.2e-32 143.3 74 85.1
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 6.1e-31 139.0 76 81.6
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 8.8e-30 135.2 74 82.4
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.8e-27 127.5 67 83.6
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 4.7e-23 112.8 93 62.4
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.0e-22 111.7 56 83.9
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.0e-22 111.7 59 84.7
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 3.9e-22 109.8 247 30.8
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.5e-21 107.8 56 83.9
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 8.2e-20 102.1 70 72.9
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.7e-17 94.4 47 91.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 5.0e-17 92.8 47 85.1
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.9e-16 90.9 48 83.3
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.3e-14 84.0 62 54.8
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.3e-13 80.1 114 39.5
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 3.1e-11 73.6 45 73.3
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.9e-08 64.3 108 34.3
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 3.6e-07 60.1 74 47.3


User provided reference genes

Program Settings