Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0150791 Rosa chinensis HOM05D005049 ORTHO05D006032 2.8e-91 338.6 167 100.0
RcHm_v2.0_Chr2g0158171 Rosa chinensis HOM05D005049 ORTHO05D006032 1.1e-79 300.1 152 96.1
RcHm_v2.0_Chr2g0171441 Rosa chinensis HOM05D005049 ORTHO05D006032 2.3e-77 292.4 149 95.3
FAN14G5348 Fragaria x ananassa HOM05D005049 ORTHO05D006032 3.6e-67 258.5 149 85.2
FvH4_6g50640 Fragaria vesca HOM05D005049 ORTHO05D006032 1.4e-66 256.5 149 84.6
Prupe.3G284100 Prunus persica HOM05D005049 ORTHO05D006032 7.6e-49 197.6 150 66.0
MD09G1034200 Malus domestica HOM05D005049 ORTHO05D006032 1.3e-40 170.2 150 58.0
MD17G1034700 Malus domestica HOM05D005049 ORTHO05D006032 1.7e-40 169.9 150 58.7
CiPaw.03G037900 Carya illinoinensis HOM05D005049 ORTHO05D006032 4.2e-39 165.2 152 56.6
TAR622G0573 Trochodendron aralioides HOM05D005049 ORTHO05D006032 4.6e-38 161.8 152 54.6
Hma1.2p1_0858F.1_g229450 Hydrangea macrophylla HOM05D005049 ORTHO05D006032 7.9e-38 161.0 154 55.2
Dinv35060 Davidia involucrata HOM05D005049 ORTHO05D006032 1.4e-37 160.2 153 56.2
Medtr6g007165 Medicago truncatula HOM05D005049 ORTHO05D006032 3.3e-36 155.6 149 57.0
Glyma.06G185500 Glycine max HOM05D005049 ORTHO05D006032 4.3e-36 155.2 149 56.4
TWI12G0306 Tripterygium wilfordii HOM05D005049 ORTHO05D006032 1.7e-35 153.3 153 52.9
CANSAT64G0408 Cannabis sativa HOM05D005049 ORTHO05D006032 3.7e-35 152.1 151 57.6
Lalb_Chr02g0160341 Lupinus albus HOM05D005049 ORTHO05D006032 8.2e-35 151.0 149 55.0
Glyma.13G168600 Glycine max HOM05D005049 ORTHO05D006032 1.1e-34 150.6 149 55.7
Nitab4.5_0003337g0090 Nicotiana tabacum HOM05D005049 ORTHO05D006032 1.1e-34 150.6 151 51.0
Psat1g056840 Pisum sativum HOM05D005049 ORTHO05D006032 1.8e-34 149.8 149 54.4
MBI16_g40725_MAGBIO Magnolia biondii HOM05D005049 ORTHO05D006032 2.4e-34 149.4 153 51.6
QL02p076639 Quercus lobata HOM05D005049 ORTHO05D006032 2.4e-34 149.4 150 56.0
Cfa007428 Carpinus fangiana HOM05D005049 ORTHO05D006032 4.1e-34 148.7 149 51.7
Nitab4.5_0005176g0050 Nicotiana tabacum HOM05D005049 ORTHO05D006032 9.1e-34 147.5 151 50.3
Lj2g0009991 Lotus japonicus HOM05D005049 ORTHO05D006032 1.5e-33 146.7 149 54.4
Phvul.004G014500 Phaseolus vulgaris HOM05D005049 ORTHO05D006032 1.5e-33 146.7 149 55.7
Actinidia36083 Actinidia chinensis HOM05D005049 ORTHO05D006032 4.5e-33 145.2 172 48.8
Ca_04197_v3 Cicer arietinum L. HOM05D005049 ORTHO05D006032 7.7e-33 144.4 150 54.0
arahy.Tifrunner.gnm1.ann1.B7LRKU Arachis hypogaea HOM05D005049 ORTHO05D006032 1.3e-32 143.7 149 53.7
Haze_14669 Corylus avellana HOM05D005049 ORTHO05D006032 2.9e-32 142.5 152 50.7
Prupe.6G347800 Prunus persica HOM05D005049 ORTHO05D006032 3.8e-32 142.1 149 49.7
arahy.Tifrunner.gnm1.ann1.41NV30 Arachis hypogaea HOM05D005049 ORTHO05D006032 6.5e-32 141.4 156 50.6
arahy.Tifrunner.gnm1.ann1.EYLE23 Arachis hypogaea HOM05D005049 ORTHO05D006032 6.5e-32 141.4 156 50.6
VMungo0464G1607 Vigna mungo HOM05D005049 ORTHO05D006032 8.5e-32 141.0 149 51.7
Actinidia35742 Actinidia chinensis HOM05D005049 ORTHO05D006032 1.1e-31 140.6 154 50.0
GSVIVG01032478001 Vitis vinifera HOM05D005049 ORTHO05D006032 1.1e-31 140.6 150 49.3
AUR62040116 Chenopodium quinoa HOM05D005049 ORTHO05D006032 3.2e-31 139.0 151 49.0
PGR142G2968 Punica granatum HOM05D005049 ORTHO05D006032 4.2e-31 138.7 157 51.0
TPR.G2274 Trifolium pratense HOM05D005049 ORTHO05D006032 7.2e-31 137.9 181 45.3
MSTRG.3171 Avicennia marina HOM05D005049 ORTHO05D006032 9.4e-31 137.5 150 50.0
Oeu004708.3 Olea europaea HOM05D005049 ORTHO05D006032 9.4e-31 137.5 151 49.7
Aqoxy3G01017 Aquilegia oxysepala HOM05D005049 ORTHO05D006032 3.6e-30 135.6 150 50.0
Nn4g22794 Nelumbo nucifera HOM05D005049 ORTHO05D006032 4.7e-30 135.2 151 49.7
Potri.017G073200 Populus trichocarpa HOM05D005049 ORTHO05D006032 1.0e-29 134.0 152 51.3
ATR0730G137 Amborella trichopoda HOM05D005049 ORTHO05D006032 1.4e-29 133.7 151 46.4
Migut.H00120 Erythranthe guttata HOM05D005049 ORTHO05D006032 1.8e-29 133.3 149 51.7
SGA_v2.0_scaffold205G41694 Striga asiatica HOM05D005049 ORTHO05D006032 3.9e-29 132.1 151 45.7
PSO478G2829 Papaver somniferum HOM05D005049 ORTHO05D006032 1.1e-28 130.6 149 49.0
Sed0008163 Sechium edule HOM05D005049 ORTHO05D006032 1.5e-28 130.2 151 48.3
EL10Ac2g02398 Beta vulgaris HOM05D005049 ORTHO05D006032 2.6e-28 129.4 152 46.7
CsaV3_3G042430 Cucumis sativus L. HOM05D005049 ORTHO05D006032 2.6e-28 129.4 151 49.0
Ciclev10015290m.g Citrus clementina HOM05D005049 ORTHO05D006032 3.3e-28 129.0 151 49.7
HPP92_021346 Vanilla planifolia HOM05D005049 ORTHO05D006032 3.3e-28 129.0 154 43.5
MELO3C009957.2 Cucumis melo HOM05D005049 ORTHO05D006032 4.4e-28 128.6 151 47.7
PSO017G6025 Papaver somniferum HOM05D005049 ORTHO05D006032 5.7e-28 128.3 149 48.3
Ah.11g045070 Amaranthus hybridus HOM05D005049 ORTHO05D006032 1.7e-27 126.7 152 46.7
Eucgr.I01812 Eucalyptus grandis HOM05D005049 ORTHO05D006032 2.8e-27 125.9 155 50.3
Sc07g0003030 Simmondsia chinensis HOM05D005049 ORTHO05D006032 2.8e-27 125.9 158 47.5
vmacro05822 Vaccinium macrocarpon HOM05D005049 ORTHO05D006032 3.7e-27 125.6 188 41.0
DCAR_015040 Daucus carota HOM05D005049 ORTHO05D006032 6.3e-27 124.8 155 48.4
Zm00001eb153900 Zea mays HOM05D005049 ORTHO05D006032 1.1e-26 124.0 158 43.7
Thecc.04G008900 Theobroma cacao HOM05D005049 ORTHO05D006032 3.1e-26 122.5 153 46.4
Manes.17G121600 Manihot esculenta HOM05D005049 ORTHO05D006032 4.1e-26 122.1 149 47.0
ClCG10G014210 Citrullus lanatus HOM05D005049 ORTHO05D006032 6.9e-26 121.3 151 46.4
Lj9C583G13 Lonicera japonica HOM05D005049 ORTHO05D006032 2.0e-25 119.8 150 46.7
ECA238G2197 Erigeron canadensis HOM05D005049 ORTHO05D006032 2.6e-25 119.4 150 46.7
Manes.17G121440 Manihot esculenta HOM05D005049 ORTHO05D006032 1.3e-24 117.1 155 46.5
TPR.G25677 Trifolium pratense HOM05D005049 ORTHO05D006032 1.7e-24 116.7 96 62.5
SGA_v2.0_scaffold66G22479 Striga asiatica HOM05D005049 ORTHO05D006032 5.0e-24 115.2 135 43.0
ECA236G0066 Erigeron canadensis HOM05D000454 ORTHO05D006032 5.5e-23 111.7 150 46.7
Atru.chr6.2298 Acer truncatum HOM05D005049 ORTHO05D006032 1.2e-22 110.5 101 57.4
Hund02271 Selenicereus undatus HOM05D005049 ORTHO05D006032 1.2e-22 110.5 163 42.9
HPP92_021351 Vanilla planifolia HOM05D005049 ORTHO05D006032 1.8e-21 106.7 99 50.5
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 8.8e-21 104.4 149 37.6
Cpa.g.sc39.89 Carica papaya HOM05D005049 ORTHO05D006032 4.4e-20 102.1 149 38.9
Manes.17G121264 Manihot esculenta HOM05D005049 ORTHO05D006032 2.2e-19 99.8 139 43.9
THA.LOC104805397 Tarenaya hassleriana HOM05D005049 ORTHO05D006032 2.4e-18 96.3 157 38.9
CSS0003936 Camellia sinensis var. sinensis HOM05D005049 ORTHO05D006032 2.6e-17 92.8 114 44.7
MELO3C033934.2 Cucumis melo HOM05D005049 ORTHO05D006032 5.9e-17 91.7 67 64.2
HanXRQChr07g0198731 Helianthus annuus HOM05D005049 ORTHO05D006032 7.7e-17 91.3 150 39.3
AT5G40280 Arabidopsis thaliana HOM05D005049 ORTHO05D006032 1.0e-16 90.9 155 38.7
A04p13200 Brassica napus HOM05D005049 ORTHO05D006032 1.7e-16 90.1 154 35.7
Sp7g01660 Schrenkiella parvula HOM05D005049 ORTHO05D006032 2.2e-16 89.7 150 37.3
C04p46950 Brassica napus HOM05D005049 ORTHO05D006032 3.8e-16 89.0 150 36.7
BolC4t26289H Brassica oleracea HOM05D005049 ORTHO05D006032 3.8e-16 89.0 150 36.7
BraA04t16979Z Brassica rapa HOM05D005049 ORTHO05D006032 6.5e-16 88.2 150 37.3
Aa31LG9G1340 Aethionema arabicum HOM05D005049 ORTHO05D006032 1.1e-15 87.4 149 36.2
Carub.0007s3535 Capsella rubella HOM05D005049 ORTHO05D006032 1.9e-15 86.7 150 37.3
Cc07_g02250 Coffea canephora HOM05D005049 ORTHO05D006032 1.9e-15 86.7 151 37.1
SMO172G0207 Selaginella moellendorffii HOM05D005049 ORTHO05D006032 3.2e-15 85.9 152 35.5
Duzib264G0847 Durio zibethinus HOM05D005049 ORTHO05D006032 4.2e-15 85.5 162 37.0
CBR_g12691 Chara braunii HOM05D005049 ORTHO05D006032 5.5e-15 85.1 56 66.1
AagrBONN_evm.TU.Sc2ySwM_117.2022 Anthoceros agrestis HOM05D005049 ORTHO05D006032 7.2e-15 84.7 103 45.6
Thhalv10027764m.g Eutrema salsugineum HOM05D005049 ORTHO05D006032 7.2e-15 84.7 150 36.0
Duzib147G1079 Durio zibethinus HOM05D005049 ORTHO05D006032 1.2e-14 84.0 155 37.4
Mapoly0123s0027 Marchantia polymorpha HOM05D005049 ORTHO05D006032 2.1e-14 83.2 55 63.6
MELO3C033889.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.0e-13 80.9 46 78.3
MELO3C032147.2 Cucumis melo HOM05D005049 ORTHO05D006032 2.3e-13 79.7 56 67.9
A04p15750 Brassica napus HOM05D005049 ORTHO05D006032 5.2e-13 78.6 152 34.2
BraA04t17209Z Brassica rapa HOM05D005049 ORTHO05D006032 5.2e-13 78.6 152 34.2
Peaxi162Scf00129g01124 Petunia axillaris HOM05D005049 ORTHO05D006032 2.0e-12 76.6 150 34.7
Cre14.g612500 Chlamydomonas reinhardtii HOM05D005049 ORTHO05D006032 4.4e-12 75.5 67 56.7
BcaB06g27754 Brassica carinata HOM05D005049 ORTHO05D006032 7.5e-12 74.7 158 32.9
MELO3C028527.2 Cucumis melo HOM05D005049 ORTHO05D006032 7.5e-12 74.7 51 66.7
MELO3C035028.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.7e-11 73.6 51 64.7
MCO05G513 Micromonas commoda HOM05D005049 ORTHO05D006032 2.2e-11 73.2 53 62.3
MD08G1151200 Malus domestica HOM05D005049 ORTHO05D006032 2.8e-11 72.8 40 82.5
AUR62032496 Chenopodium quinoa HOM05D005049 ORTHO05D006032 8.2e-11 71.2 156 32.7
MELO3C032284.2 Cucumis melo HOM05D005049 ORTHO05D006032 8.2e-11 71.2 93 46.2
PRCOL_00002137 Prasinoderma coloniale HOM05D005049 ORTHO05D006032 1.1e-10 70.9 63 52.4
BcaB06g27470 Brassica carinata HOM05D005049 ORTHO05D006032 4.1e-10 68.9 43 72.1
Rhsim10G0022300 Rhododendron simsii HOM05D005049 ORTHO05D006032 5.3e-10 68.6 106 36.8
arahy.Tifrunner.gnm1.ann1.53WLRG Arachis hypogaea HOM05D006021 ORTHO05D007747 2.2e-08 63.2 43 55.8
arahy.Tifrunner.gnm1.ann1.G8Y61E Arachis hypogaea HOM05D006021 ORTHO05D007747 2.2e-08 63.2 43 55.8
MELO3C029173.2 Cucumis melo HOM05D005049 ORTHO05D006032 3.8e-08 62.4 30 86.7
CAN.G206.31 Capsicum annuum HOM05D005049 ORTHO05D006032 5.0e-08 62.0 152 30.9
TPR.G15521 Trifolium pratense HOM05D006021 ORTHO05D007747 8.5e-08 61.2 48 50.0
Cc02_g08000 Coffea canephora HOM05D006021 ORTHO05D007747 1.1e-07 60.8 43 53.5
Medtr7g024540 Medicago truncatula HOM05D006021 ORTHO05D007747 1.5e-07 60.5 48 50.0
Ca_07253_v3 Cicer arietinum L. HOM05D006021 ORTHO05D007747 1.9e-07 60.1 48 50.0
Psat3g181400 Pisum sativum HOM05D006021 ORTHO05D007747 5.5e-07 58.5 48 47.9
Lj7A514T33 Lonicera japonica HOM05D005049 ORTHO05D006032 7.2e-07 58.2 118 33.1
Phvul.008G012800 Phaseolus vulgaris HOM05D006021 ORTHO05D007747 7.2e-07 58.2 43 51.2
Rhsim09G0165400 Rhododendron simsii HOM05D006021 ORTHO05D007747 9.4e-07 57.8 43 51.2
Cpa.g.sc1.396 Carica papaya HOM05D006021 ORTHO05D007747 1.2e-06 57.4 48 45.8
AUR62038353 Chenopodium quinoa HOM05D006021 ORTHO05D007747 1.2e-06 57.4 54 42.6
Glyma.02G093000 Glycine max HOM05D006021 ORTHO05D007747 1.2e-06 57.4 43 51.2
Glyma.18G289300 Glycine max HOM05D006021 ORTHO05D007747 1.2e-06 57.4 43 51.2
Cfa001493 Carpinus fangiana HOM05D006021 ORTHO05D007747 1.6e-06 57.0 54 42.6
Lalb_Chr10g0091731 Lupinus albus HOM05D006021 ORTHO05D007747 1.6e-06 57.0 43 51.2
Lsat_1_v5_gn_2_119720 Lactuca sativa HOM05D006021 ORTHO05D007747 2.1e-06 56.6 54 42.6
Lj1g0022473 Lotus japonicus HOM05D006021 ORTHO05D007747 2.1e-06 56.6 43 51.2
Haze_27246 Corylus avellana HOM05D005049 ORTHO05D006032 2.7e-06 56.2 162 27.2
Ciclev10031583m.g Citrus clementina HOM05D006021 ORTHO05D007747 3.6e-06 55.8 54 42.6
Haze_17048 Corylus avellana HOM05D006021 ORTHO05D007747 3.6e-06 55.8 54 40.7
MELO3C034539.2 Cucumis melo HOM05D005049 ORTHO05D006032 3.6e-06 55.8 37 62.2
ECA238G0092 Erigeron canadensis HOM05D006021 ORTHO05D007747 3.6e-06 55.8 43 51.2
VMungo1383G0472 Vigna mungo HOM05D006021 ORTHO05D007747 3.6e-06 55.8 43 48.8
AUR62041863 Chenopodium quinoa HOM05D006021 ORTHO05D007747 4.7e-06 55.5 43 46.5
vmacro10241 Vaccinium macrocarpon HOM05D006021 ORTHO05D007747 4.7e-06 55.5 43 48.8
Atru.chr12.463 Acer truncatum HOM05D006021 ORTHO05D007747 6.1e-06 55.1 54 40.7
Sopen02g031640 Solanum pennellii HOM05D005049 ORTHO05D006032 6.1e-06 55.1 100 34.0
Atru.chr12.485 Acer truncatum HOM05D006021 ORTHO05D007747 8.0e-06 54.7 54 38.9
ClCG09G019960 Citrullus lanatus HOM05D006021 ORTHO05D007747 8.0e-06 54.7 59 33.9
Dinv26002 Davidia involucrata HOM05D006021 ORTHO05D007747 8.0e-06 54.7 54 38.9
MD07G1196300 Malus domestica HOM05D006021 ORTHO05D007747 8.0e-06 54.7 47 46.8


User provided reference genes

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