Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.1e-31 139.4 73 100.0
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.9e-28 128.6 69 97.1
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 2.5e-28 128.3 69 95.7
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.5e-28 128.3 69 95.7
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.5e-28 128.3 69 95.7
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 3.6e-27 124.4 69 92.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.6e-27 124.4 69 91.3
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 4.7e-27 124.0 69 94.2
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 4.7e-27 124.0 69 94.2
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 4.7e-27 124.0 69 94.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 8.0e-27 123.2 69 92.8
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 8.0e-27 123.2 69 92.8
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.4e-26 122.5 69 91.3
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.4e-26 122.5 69 92.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.4e-26 122.5 69 92.8
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.4e-26 122.5 69 92.8
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.4e-26 122.5 69 92.8
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.4e-26 122.5 69 92.8
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.4e-26 122.5 69 89.9
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 89.9
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 89.9
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 92.8
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.8e-26 122.1 69 91.3
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 91.3
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 89.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.0e-26 120.9 69 91.3
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 5.2e-26 120.6 69 89.9
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 5.2e-26 120.6 69 88.4
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 5.2e-26 120.6 69 88.4
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 5.2e-26 120.6 69 88.4
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.8e-26 120.2 69 88.4
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 6.8e-26 120.2 69 91.3
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 6.8e-26 120.2 69 91.3
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 6.8e-26 120.2 69 89.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 6.8e-26 120.2 69 89.9
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 6.8e-26 120.2 69 88.4
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 6.8e-26 120.2 69 89.9
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 8.8e-26 119.8 69 87.0
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 8.8e-26 119.8 69 89.9
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 8.8e-26 119.8 69 88.4
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.2e-25 119.4 69 89.9
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.2e-25 119.4 69 88.4
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.2e-25 119.4 69 88.4
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.2e-25 119.4 69 89.9
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.5e-25 119.0 69 87.0
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.5e-25 119.0 69 87.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.5e-25 119.0 69 88.4
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.5e-25 119.0 69 88.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.5e-25 119.0 69 87.0
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.5e-25 119.0 69 88.4
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 2.0e-25 118.6 69 88.4
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.0e-25 118.6 69 88.4
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.0e-25 118.6 69 89.9
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.0e-25 118.6 69 89.9
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 2.0e-25 118.6 69 88.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.6e-25 118.2 69 88.4
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.6e-25 118.2 69 87.0
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 2.6e-25 118.2 69 88.4
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 2.6e-25 118.2 69 88.4
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 2.6e-25 118.2 69 89.9
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.6e-25 118.2 69 87.0
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 3.4e-25 117.9 69 87.0
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 3.4e-25 117.9 69 87.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.4e-25 117.9 69 85.5
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.4e-25 117.9 69 85.5
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 3.4e-25 117.9 69 87.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 3.4e-25 117.9 69 89.9
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 4.4e-25 117.5 68 88.2
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.4e-25 117.5 69 88.4
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 5.7e-25 117.1 69 87.0
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 5.7e-25 117.1 69 85.5
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.7e-25 117.1 68 88.2
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.7e-25 117.1 69 85.5
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.7e-25 117.1 69 85.5
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.5e-25 116.7 69 85.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 9.8e-25 116.3 69 85.5
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 9.8e-25 116.3 69 87.0
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 9.8e-25 116.3 69 84.1
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 9.8e-25 116.3 69 84.1
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 9.8e-25 116.3 69 85.5
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.8e-25 116.3 69 85.5
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.7e-24 115.5 69 84.1
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.7e-24 115.5 69 82.6
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.7e-24 115.5 69 85.5
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.7e-24 115.5 69 84.1
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.7e-24 115.5 69 84.1
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 2.2e-24 115.2 69 84.1
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 2.2e-24 115.2 69 84.1
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 2.2e-24 115.2 69 84.1
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.8e-24 114.8 69 82.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.8e-24 114.8 69 82.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.8e-24 114.8 69 84.1
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.7e-24 114.4 69 81.2
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 3.7e-24 114.4 69 85.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.1e-23 112.8 69 82.6
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.1e-23 112.8 69 84.1
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 3.1e-23 111.3 69 79.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.6e-22 109.0 69 78.3
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.5e-22 107.5 69 79.7
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.0e-21 106.3 69 75.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.3e-21 105.9 69 78.3
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 6.6e-21 103.6 68 73.5
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 6.6e-21 103.6 69 72.5
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 6.6e-21 103.6 69 71.0
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.6e-21 103.2 69 72.5
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.1e-20 102.8 69 71.0
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.1e-19 98.6 57 86.0
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.1e-19 98.6 69 71.0
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.8e-19 98.2 57 84.2
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 6.8e-18 93.6 57 87.7
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.5e-17 92.4 68 61.8
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 5.7e-17 90.5 54 87.0
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.3e-16 89.4 69 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.7e-16 89.0 69 60.9
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.2e-16 88.6 58 75.9
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 3.2e-15 84.7 55 81.8
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.2e-14 82.8 67 58.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 7.8e-14 80.1 58 74.1
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.0e-13 79.7 65 58.5
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 1.7e-13 79.0 64 57.8
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.3e-13 78.6 64 67.2
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.5e-12 75.9 68 51.5
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.7e-08 61.2 69 55.1
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 5.4e-07 57.4 67 44.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 9.2e-07 56.6 31 87.1
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.2e-06 56.2 69 52.2


User provided reference genes

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